View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20055_high_18 (Length: 232)

Name: NF20055_high_18
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20055_high_18
NF20055_high_18
[»] chr6 (3 HSPs)
chr6 (7-110)||(11437166-11437265)
chr6 (157-220)||(11437312-11437375)
chr6 (42-102)||(11429889-11429949)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 11437166 - 11437265
Alignment:
Q  7 gcagcagagatatcaacatttttgacgtcgcggtgtaaattgtggttgccaacatttttcaaaaccttgatatgcactctaacatgcttaactcatatct 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11437166 gcagcagagacatcaacatttttgacgtcgcggtgtaaattgtg----ccaacatttttcaaaaccttgatatgcactctaacatgcttaactcatttct 11437261  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 11437312 - 11437375
Alignment:
Q  157 ctctatctattaacacacatggaatttgannnnnnnnngacataccaatggatctttttcaatg 220  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||| |||||    
T  11437312 ctctatctattaacacacatggaatttgaattttttttgacataccaatggatcttttgcaatg 11437375  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 11429889 - 11429949
Alignment:
Q  42 taaattgtggttgccaacatttttcaaaaccttgatatgcactctaacatgcttaactcat 102  Q
    ||||| ||| |||| ||| ||||||||||||||||| |||||| || ||||||||| ||||    
T  11429889 taaatggtgtttgcaaacctttttcaaaaccttgatgtgcactttagcatgcttaattcat 11429949  T

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