View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20055_high_20 (Length: 205)
Name: NF20055_high_20
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20055_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 9002608 - 9002783
Alignment:
| Q |
16 |
aatattcaggaacaacggttaaataatattagctaaaacttcaatttttctgggaataaaatagtctcgagaaagtatttactgattagcaactaaagaa |
115 |
Q |
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| T |
9002608 |
aatattcaggaacaacggttaaataatattagctaaaacttcaatttttctgggaataaaatagtctcgagaaagtatttactgattagcaactaaagaa |
9002707 |
T |
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| Q |
116 |
gatcgaaaagctgacattatagaaactgtccattttttcctcctccatcaacacagaaggtaaaaaggaagtttct |
191 |
Q |
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| T |
9002708 |
gatcgaaaagctgacattatagaaactgtccattttttcctcctccatcaacacagaaggtaaaaaggaagtttct |
9002783 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 16715804 - 16715839
Alignment:
| Q |
138 |
aaactgtccattttttcctcctccatcaacacagaa |
173 |
Q |
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| T |
16715804 |
aaactgtccattttttcctcctccatcaacatagaa |
16715839 |
T |
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