View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20055_high_6 (Length: 335)
Name: NF20055_high_6
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20055_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 1616281 - 1616598
Alignment:
| Q |
1 |
atttgattatttatgatgaatgatacgtttttattgaattacttaatgcttaattaaaaaattccttttcagaaaaagaaagaagtgccgaattttagaa |
100 |
Q |
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| T |
1616281 |
atttgattatttatgatgaatgatacgtttttattgaattacttaatgcttaattaaaaaattccttttcagaaaaagaaagaagtgccgaattttagaa |
1616380 |
T |
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| Q |
101 |
atctccccttatacaagggatttgattgataagaattaatgcaccaaactttacttgatgcataa-nnnnnnnnnnnnnagggaacttaatacat--att |
197 |
Q |
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| T |
1616381 |
atctccccttatacaagggatttgattgataagaattaatgcaccaaactttacttgatgcataattattttattttttagggaacttaatacataaatt |
1616480 |
T |
|
| Q |
198 |
tttaagatttggcctcaaaatacttataaaatacaacaaattaagtataagtacctctcnnnnnnnnctaatatgagtaacgtaaaacaagcgtttgtca |
297 |
Q |
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| T |
1616481 |
tttaagatttggcctcaaaatacttataaaatacaa-----taagtataagtacctctc-aaaaaaactaatatgagtaacgtaaaacaagcgtttgtca |
1616574 |
T |
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| Q |
298 |
acatttttgtcaaataatattctt |
321 |
Q |
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| T |
1616575 |
acatttttgtcaaataatattctt |
1616598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 40050572 - 40050472
Alignment:
| Q |
56 |
aaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttatacaagggatttgattgataagaattaatgcaccaaactttact |
155 |
Q |
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| T |
40050572 |
aaaaaattccttttcagaaaaagaaataaaaaccgaattttagaaatctcccgttatacaagggatttgattgagaagaatcaatgcatcaaaatttact |
40050473 |
T |
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| Q |
156 |
t |
156 |
Q |
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| T |
40050472 |
t |
40050472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40050654 - 40050596
Alignment:
| Q |
1 |
atttgattatttatgatgaatgatacgtttttattgaattacttaatgcttaattaaaa |
59 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40050654 |
atttgattatttatgaagaatgatacgtttttattgaattaattaatgcttaattaaaa |
40050596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 40050475 - 40050421
Alignment:
| Q |
184 |
acttaatacata--tttttaagatttggcctcaaaatacttataaaatacaacaa |
236 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
40050475 |
acttaatacatagatttttaagatttggtctcaaaatacttataaaatacaacaa |
40050421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 40050392 - 40050335
Alignment:
| Q |
267 |
aatatgagtaacgtaaaa---caagcgtttgtcaacatttttgtcaaataatattctt |
321 |
Q |
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||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||| |
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| T |
40050392 |
aatatgaataacgtaaaagtacaagcctttgtcaacatttttgtcaaataaaattctt |
40050335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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