View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20055_low_1 (Length: 719)
Name: NF20055_low_1
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20055_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 14 - 703
Target Start/End: Complemental strand, 31999556 - 31998867
Alignment:
| Q |
14 |
agggtccaaaactagctggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaagcctctcttttaaagtaacc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31999556 |
agggtccaaaactagctggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaagcctctcttttaaagtaacc |
31999457 |
T |
|
| Q |
114 |
actggtgatggtagaactgtgacaagctacaacgtggcaccagctaattggcaattcggtcagacctttcacgggagtcagttttagacttttgtaaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31999456 |
actggtgatggtagaactgtgacaagctacaacgtggcaccagctaattggcaattcggtcagacctttcacgggagtcagttttagactttcgtaaaat |
31999357 |
T |
|
| Q |
214 |
gtggggcaggttagtgaaaaagtttgtaggtattaattaaaagtcaattctgttatagacctcttttgatagatggtatttagtgtattaacatttaaaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31999356 |
gtggggcaggttagtgaaaaagtttgtaggtattaattaaaagtcaattctgttatagacctcttttgatagatggtatatagtgtattaacatttaaaa |
31999257 |
T |
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| Q |
314 |
atcgtcttgcggctttggaatagaatggattgtggagttgagtttcaatcatgtcannnnnnncatggactcaagttggttgtagaccagtttaatagac |
413 |
Q |
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| T |
31999256 |
atcgtcttgcggctttggaatagaagggattgtggagttgagtttcaatcatgtcatttttttcatggactcaagttggttgtagaccagtttaatagac |
31999157 |
T |
|
| Q |
414 |
actctcaggattagacggaagtaggcgctatccttgttacatgtaggatcctaattggtttatgtaacaactcttgtgtggagttttctaggcagtcaat |
513 |
Q |
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| T |
31999156 |
actctcgggattagacggaagtaggcgctattcttgttgcatgtaggagcctaattggtttatgtaacaactcttgtgtggagttttctaggcagtcaat |
31999057 |
T |
|
| Q |
514 |
gcaatttctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaacaactatatttaaaa |
613 |
Q |
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| T |
31999056 |
gcaatttctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaacaactatatttaaaa |
31998957 |
T |
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| Q |
614 |
atcgtctaaaattctaatgatgattgatgttatcctctataagtagaaactctgatccacgtcctcatcgttcagatagtgacatgatat |
703 |
Q |
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| T |
31998956 |
atcgtctaaaattctaatgatgatcgatgttatcctctataagtagaaactctgatccacgtcctcatcgttcagatagtgacatgatat |
31998867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 27488127 - 27487973
Alignment:
| Q |
30 |
tggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaagcctctcttttaaagtaaccactggtgatggtagaa |
129 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||| ||||| || || |||||||||||| |||||| ||| |||| || || |||||||||||| |
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| T |
27488127 |
tggcaaccaatgtcaagaaattggggtcaaaattggcaaagcaactcttatcttaatggacaatccctctcatttcaagttacaacaagtgatggtagaa |
27488028 |
T |
|
| Q |
130 |
ctgtgacaagctacaacgtggcaccagctaattggcaattcggtcagacctttca |
184 |
Q |
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| T |
27488027 |
ctatgacaagtttcaatgtggcaccagcaaattggcaatttggtcaaacctttca |
27487973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 27476869 - 27476724
Alignment:
| Q |
30 |
tggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaagcctctcttttaaagtaaccactggtgatggtagaa |
129 |
Q |
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| T |
27476869 |
tggcaaccaatgtcaagaaattggggccaaaattggcaaagcaactcttatcttaatggacaatccctctcatttcaagttacaacaagtgatggtagaa |
27476770 |
T |
|
| Q |
130 |
ctgtgacaagctacaacgtggcaccagctaattggcaattcggtca |
175 |
Q |
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| T |
27476769 |
ctatgaccagtttcaatgtggctccagcaaattggcaatttggtca |
27476724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 11592884 - 11592972
Alignment:
| Q |
21 |
aaaactagctggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaagcctctcttttaaagt |
109 |
Q |
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| T |
11592884 |
aaaactaattggcaaccaatgtctagaaattggggccaaaattggcaaagcaactctaaccttgatggacaaagtctctccttcaaagt |
11592972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 519 - 598
Target Start/End: Original strand, 17231882 - 17231961
Alignment:
| Q |
519 |
ttctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaa |
598 |
Q |
| |
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|||||||||||||| |||| || |||||| |||| || | |||||| | ||| ||| ||||||||||||||||||||||| |
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| T |
17231882 |
ttctcatctttattatgatattccaacatatattaataacttgatcatcaatgataggaattagttttcctcttgtaaaa |
17231961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 459
Target Start/End: Original strand, 30612355 - 30612429
Alignment:
| Q |
385 |
caagttggttgtagaccagtttaatagacactctcaggattagacggaagtaggcgctatccttgttacatgtag |
459 |
Q |
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||||||||| |||||||| |||||| |||||||||| ||| | ||| ||||||||||||| |||| || |||||| |
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| T |
30612355 |
caagttggtcgtagaccaatttaatcgacactctcaagataacacgaaagtaggcgctattcttgctaaatgtag |
30612429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 2866281 - 2866212
Alignment:
| Q |
25 |
ctagctggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaag |
94 |
Q |
| |
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|||| |||||| |||||||||| |||||||| ||||| ||||| || || || ||||||||||||||||| |
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| T |
2866281 |
ctagatggcaagccatgtcaaggaattgggggcaaaattggcaaagtaactcttaccttaatggacaaag |
2866212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 3803516 - 3803415
Alignment:
| Q |
24 |
actagctggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaagcctctcttttaaagtaaccactggtgatg |
123 |
Q |
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| T |
3803516 |
actagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcaccactggtaatg |
3803417 |
T |
|
| Q |
124 |
gt |
125 |
Q |
| |
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|| |
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|
| T |
3803416 |
gt |
3803415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 3814185 - 3814084
Alignment:
| Q |
24 |
actagctggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaagcctctcttttaaagtaaccactggtgatg |
123 |
Q |
| |
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||||| |||||| |||||||||| |||||||| ||||| ||||||||||| || || | ||||||||||| || || ||| ||| ||||||||| ||| |
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| T |
3814185 |
actagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcaccactggtaatg |
3814086 |
T |
|
| Q |
124 |
gt |
125 |
Q |
| |
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|| |
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|
| T |
3814085 |
gt |
3814084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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