View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20055_low_13 (Length: 279)
Name: NF20055_low_13
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20055_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 3585273 - 3585037
Alignment:
| Q |
14 |
atcatcctcaaggttagtagtactatatagtacttattttaattagttttcaatgttttaattttgattggagaaagaaagaaattagtgttataatgca |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585273 |
atcatcctcaaggttagtagtactatat---------tttaattagttttcaatgttttaattttgattggagaaagaaagaaattagtgttataatgca |
3585183 |
T |
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| Q |
114 |
atgatgacttaggttgagctgccatgtgctaatgtagagtccaacaagaactgggggaaacttgtttcggccacgttggcagctgctgttattgttttca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585182 |
atgatgacttaggttgagctgccatgtgctaatgtagagtccaacaagaactgggggaaacttgtttcggccacgttggcagctgctgttattgttttca |
3585083 |
T |
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| Q |
214 |
gctctgacatgtctgcccttgctgatcttaacaaatttgaagctga |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585082 |
gctctgacatgtctgcccttgctgatcttaacaaatttgaagctga |
3585037 |
T |
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