View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20055_low_14 (Length: 271)
Name: NF20055_low_14
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20055_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 52712467 - 52712198
Alignment:
| Q |
1 |
agcttaggttgtaatcccatgaacaaacctagactaaacatggccattccaagaccagcattagatagtattgagatggaaccgtttacaatcgagggca |
100 |
Q |
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| T |
52712467 |
agcttaggttgtaatcccatgaacaaacctagactaaacatggccattccaagaccagtattagatagtattgagatggaaccgtttacaatcgagggca |
52712368 |
T |
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| Q |
101 |
tttcaatgtgcaacctgcagtgattatttatttgaagtttaaaaaatctttaatattattattattcatgatccaacgttat------------------ |
182 |
Q |
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| T |
52712367 |
tttcaatgtgcaacctgcagtg---atttatttgaagtttaaaaaatctttaa---tattattattcatgatccaacgttataattgattgataaagaca |
52712274 |
T |
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| Q |
183 |
-aaaagatagaagattttaatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttagg |
257 |
Q |
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| T |
52712273 |
aaaaagatagaagatttttatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttagg |
52712198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 52718021 - 52717929
Alignment:
| Q |
27 |
acctagactaaacatggccattccaagaccagcattagatagtattgagatggaaccgtttacaatcgagggcatttcaatgtgcaacctgca |
119 |
Q |
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| T |
52718021 |
acctagactgaacatggccattccaagaccagcatcagacagtattgagatggaaccttttacaatggatggcatttcaatgtgaaacctgca |
52717929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 52717852 - 52717795
Alignment:
| Q |
200 |
aatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttagg |
257 |
Q |
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| T |
52717852 |
aatacctaaatgatacaagagaccaaacaagtcctataagacttgagtaggtattagg |
52717795 |
T |
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