View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20055_low_18 (Length: 236)
Name: NF20055_low_18
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20055_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 31984789 - 31984560
Alignment:
| Q |
1 |
aaacaaaaagataatattgtcgggattaagttttgttaaccaatcatctaattttcttccttggtcgattattt------------cagttatactttca |
88 |
Q |
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| T |
31984789 |
aaacaaaaagataatattgtcgggactaagttttgttaaccaatcatctaattttcttccttggtcgattatttaatctcttatttcagttatattttca |
31984690 |
T |
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| Q |
89 |
cgtgtccgttttagtacattttcatgtctaacaaacaacgcgagaaccattattcttattaacttcctatactaagatttcttgatatttatatttgaat |
188 |
Q |
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| T |
31984689 |
catgtccgttttcgtacattttcatgtctgacaaacaacgagagaaccattattcttattaacttcctatactaagatttcttgatatttatatttgaat |
31984590 |
T |
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| Q |
189 |
aaatatgtaaaatacttgaatatggcactt |
218 |
Q |
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| T |
31984589 |
aaatatgtaaaatacttgactatggcactt |
31984560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 37800234 - 37800297
Alignment:
| Q |
9 |
agataatattgtcgggattaagttttgttaaccaatcatctaattttcttccttggtcgattat |
72 |
Q |
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| T |
37800234 |
agatagtattgatgggattaagttttgttaactaataatctaatgttcttctttgatcgattat |
37800297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 37623705 - 37623755
Alignment:
| Q |
22 |
gggattaagttttgttaaccaatcatctaattttcttccttggtcgattat |
72 |
Q |
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| T |
37623705 |
gggattaagttttgttaactaataatctaatgttcttctttgatcgattat |
37623755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 35407976 - 35407913
Alignment:
| Q |
7 |
aaagataatattgtcgggattaagttttgttaaccaatcatctaattttcttccttggtcgatt |
70 |
Q |
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|||||||||||||| || ||||||||| |||||| ||||||||||| | ||||||| |||||| |
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| T |
35407976 |
aaagataatattgttggaattaagtttcgttaactaatcatctaatatctttccttgatcgatt |
35407913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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