View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20055_low_2 (Length: 445)
Name: NF20055_low_2
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20055_low_2 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Original strand, 44488947 - 44489382
Alignment:
| Q |
10 |
gtccaacaatatatagtctgaaaatgtgtttataaatgaagacaatatatcttcattgtaaaagctgattttgtaaggattgaattagacctaaccaaaa |
109 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44488947 |
gtccaataagatatagtctgaaaatgtgtttataaatgaagacaat----cttcattgtaaaagctgattttgtaaggattgaattagacctaaccaaaa |
44489042 |
T |
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| Q |
110 |
gatgtata----gtttctgaaaatgaaataaaaattgttttcttaccaaatgttggggaattaaaagttgtccatccatcaccaacactgtgattgccgg |
205 |
Q |
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| T |
44489043 |
gatgtatatatagtttctgaaaatgaaataaaaattgttttcttaccaaatgttggggaattaaaagttgtccatccatcaccaacactgtgattgccgg |
44489142 |
T |
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| Q |
206 |
tgataattgttcggttgattccatctccgatcatcatcagatacgccttgttttgagggatagagacatattcttcataaacgccctctttgataaatat |
305 |
Q |
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| T |
44489143 |
tgataattgttcggttgattccatctccgatcatcatcagatacgccttgttttgagggatagagacatattcttcataaacgccctctttgataaatat |
44489242 |
T |
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| Q |
306 |
catgaaatatccatttgttgcattgatagtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaaca |
405 |
Q |
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| T |
44489243 |
catgaaatatccatttgttgcattgatagtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaaca |
44489342 |
T |
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| Q |
406 |
acaatgtccgtaaccaaaacaccactttgatcatcatcat |
445 |
Q |
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| T |
44489343 |
acaatgtccctaaccaaaacaccactttgatcatcatcat |
44489382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 44464892 - 44464956
Alignment:
| Q |
337 |
ttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaac |
401 |
Q |
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| T |
44464892 |
ttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaac |
44464956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 24061844 - 24061920
Alignment:
| Q |
334 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaat |
410 |
Q |
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| T |
24061844 |
gtgttatttggtgcagcagctattgcatcattgatagtggtgaagtttccacttccatcttgactaacaacaacaat |
24061920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 39450421 - 39450346
Alignment:
| Q |
334 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
409 |
Q |
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| T |
39450421 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
39450346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 39471293 - 39471218
Alignment:
| Q |
334 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
409 |
Q |
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| T |
39471293 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
39471218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 3200 - 3275
Alignment:
| Q |
334 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
409 |
Q |
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| T |
3200 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
3275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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