View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20055_low_3 (Length: 358)
Name: NF20055_low_3
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20055_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 34437549 - 34437877
Alignment:
| Q |
19 |
ctaactagtatcactactatactctttaataattaatcagaaactattggcaatgctcattttaatttcaaatttgccttggtataaatagggacatggt |
118 |
Q |
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| T |
34437549 |
ctaactggtatcactactatactctttaatatttaatcagaaactattggcaatgcttattttaatttcaaatttgccttggtataaatagggacatggt |
34437648 |
T |
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| Q |
119 |
ttccgaagcgacttggttgaaatgataatgcagttgaaaccagccttttttagatttccaggtatgtataacattttctggcttattaagcatgctatag |
218 |
Q |
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| T |
34437649 |
ttccgaagcgacttggttgaaatgataatgcagttgaaaccagccttttttagatttccaggtatgtataacattttctggcttattaagcatgctatag |
34437748 |
T |
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| Q |
219 |
taatctaagagaaaacatattaatactaatacaaatttaatttgacacgttgttactaaatcattcaataagctcaaaattccaataattcaannnnnnn |
318 |
Q |
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| T |
34437749 |
taatctaagagaaaacatattaatactaatacaaatttaatttgacacgttgttactaaatcattcaataaactcaaaattccaataatgcaattttttt |
34437848 |
T |
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| Q |
319 |
ncttttcaaaaggtggtaatattcttcga |
347 |
Q |
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| T |
34437849 |
tcttttcaaaaggtggtaattttcttcga |
34437877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 34448419 - 34448554
Alignment:
| Q |
51 |
ttaatcagaaactattggcaatgctcattttaatttcaaatttgccttggtataaatagggacatggtttccgaagcgacttggttgaaatgataatgca |
150 |
Q |
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| T |
34448419 |
ttaatcataaactattggcaatgctcatttttatttcaaatttg--tt-------atagggacatggttttcgaaccgacttggttgaaatggttcaaaa |
34448509 |
T |
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| Q |
151 |
gttgaaaccagccttttttagatttccaggtatgtataacatttt |
195 |
Q |
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| T |
34448510 |
gttgaaaccagcctttcttagatttccaggtatgcataacatttt |
34448554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 34464785 - 34464875
Alignment:
| Q |
105 |
aatagggacatggtttccgaagcgacttggttgaaatgataatgcagttgaaaccagccttttttagatttccaggtatgtataacatttt |
195 |
Q |
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||||||||||||||||||| | ||||||||||| ||| | || |||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
34464785 |
aatagggacatggtttccggaaggacttggttgagatgttgattcagttgaaaccagcctttcttagatttccaggtatgcataacatttt |
34464875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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