View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20055_low_4 (Length: 357)

Name: NF20055_low_4
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20055_low_4
NF20055_low_4
[»] chr3 (5 HSPs)
chr3 (52-342)||(26612418-26612709)
chr3 (1-61)||(3574542-3574602)
chr3 (1-53)||(2754715-2754767)
chr3 (1-53)||(11347266-11347318)
chr3 (10-54)||(24343544-24343588)
[»] chr8 (2 HSPs)
chr8 (1-55)||(26042131-26042185)
chr8 (1-51)||(37132673-37132723)
[»] chr7 (2 HSPs)
chr7 (1-51)||(15238382-15238432)
chr7 (1-54)||(37477095-37477148)
[»] chr5 (2 HSPs)
chr5 (1-51)||(17545700-17545750)
chr5 (1-53)||(2477634-2477686)
[»] chr6 (2 HSPs)
chr6 (1-54)||(6127272-6127325)
chr6 (1-53)||(23291099-23291151)
[»] chr4 (1 HSPs)
chr4 (1-53)||(50156593-50156645)
[»] chr2 (1 HSPs)
chr2 (1-49)||(21393703-21393751)
[»] chr1 (1 HSPs)
chr1 (1-53)||(18404440-18404492)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 52 - 342
Target Start/End: Complemental strand, 26612709 - 26612418
Alignment:
Q  52 ttatccaagcactttaattcaaaatatattggaggttagtgactttgtttaggttttttgtccatggattggtgactgagcaggtggtgtttgaattgga 151  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26612709 ttatccaagcactttaattcaaaatatattggaggctagtgactt-gtttaggttttttgtccatggattggtgagtgagcaggtggtgtttgaattgga 26612611  T
Q  152 aggatgcatttaatgtgtggtatgaactagtccaacgcagaaaatatttggctgatat--taaattttccttcgaattttcaatttcaccctcatttaga 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||    
T  26612610 aggatgcatttaatgtgtggtatgaactagtccaacgcagaaaatatttgggtgatatattaaatttttcttcgaattttcaatttcaccctcatttaga 26612511  T
Q  250 ttctataaactgaaacataaattttaaatacatactaattgagattagtaataaacactttattctaattttagattataagatgcaattatt 342  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26612510 ttctataaactgaaacataaattttaaatgcatactaattgagattagtaataaacactttattctaattttagattataagatgcaattatt 26612418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3574542 - 3574602
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctcttatccaagc 61  Q
    ||||||||||| ||||||||||||| | ||| || |||||||| ||||||||||| |||||    
T  3574542 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcttattcaagc 3574602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2754767 - 2754715
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctctt 53  Q
    ||||||||||| ||||||||||||| | ||| || |||||||| |||||||||    
T  2754767 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 2754715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11347318 - 11347266
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctctt 53  Q
    ||||||||||| ||||||||||||| | ||| || |||||||| |||||||||    
T  11347318 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 11347266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 24343588 - 24343544
Alignment:
Q  10 aatttttcttgataaattttttattaatatataggattgctctta 54  Q
    |||||||||||||||| | ||| ||||||||||| ||||||||||    
T  24343588 aatttttcttgataaaatctttcttaatatatagcattgctctta 24343544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26042131 - 26042185
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctcttat 55  Q
    |||||||| || ||||||||||||| | ||| ||||||||||| |||||||||||    
T  26042131 tcattcttgaaattttcttgataaaatctttcttaatatatagcattgctcttat 26042185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37132673 - 37132723
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctc 51  Q
    ||||||||||||||||||||||||| | ||| || |||||||| |||||||    
T  37132673 tcattcttaaatttttcttgataaaatattttttgatatatagcattgctc 37132723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15238432 - 15238382
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctc 51  Q
    |||||||| |||||||||||| ||||||||| || |||||||| |||||||    
T  15238432 tcattcttgaatttttcttgagaaattttttcttgatatatagcattgctc 15238382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37477095 - 37477148
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctctta 54  Q
    ||||||||||||||||||||| ||| | ||| || |||||||| ||||||||||    
T  37477095 tcattcttaaatttttcttgagaaaatctttcttgatatatagcattgctctta 37477148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17545700 - 17545750
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctc 51  Q
    |||||||| |||||||||||| ||||||||| || |||||||| |||||||    
T  17545700 tcattcttgaatttttcttgagaaattttttcttgatatatagcattgctc 17545750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2477686 - 2477634
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctctt 53  Q
    ||||||||||| ||||||||||||| | ||| || |||||||| |||||||||    
T  2477686 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 2477634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6127325 - 6127272
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctctta 54  Q
    ||||||||||| ||||||||||||| | ||| || |||||||| ||||||||||    
T  6127325 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctta 6127272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23291099 - 23291151
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctctt 53  Q
    ||||||||||| ||||||||||||| | ||| || |||||||| |||||||||    
T  23291099 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 23291151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50156593 - 50156645
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctctt 53  Q
    ||||||||||| ||||||||| ||| | ||| ||||||||||| |||||||||    
T  50156593 tcattcttaaaattttcttgaaaaaatctttcttaatatatagcattgctctt 50156645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21393703 - 21393751
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgc 49  Q
    ||||||||||||||||||||| ||| ||||| || |||||||| |||||    
T  21393703 tcattcttaaatttttcttgagaaaatttttcttgatatatagcattgc 21393751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18404492 - 18404440
Alignment:
Q  1 tcattcttaaatttttcttgataaattttttattaatatataggattgctctt 53  Q
    ||||||||||| ||||||||||||| | ||| || |||||||| |||||||||    
T  18404492 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 18404440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University