View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20055_low_5 (Length: 354)

Name: NF20055_low_5
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20055_low_5
NF20055_low_5
[»] chr8 (24 HSPs)
chr8 (78-344)||(3240090-3240357)
chr8 (270-320)||(21237702-21237752)
chr8 (269-341)||(14585605-14585676)
chr8 (269-341)||(18890818-18890889)
chr8 (269-341)||(23230550-23230620)
chr8 (255-325)||(24186786-24186858)
chr8 (257-325)||(36948565-36948633)
chr8 (269-325)||(8443649-8443704)
chr8 (270-342)||(8826116-8826187)
chr8 (269-342)||(24099369-24099446)
chr8 (269-341)||(41896416-41896487)
chr8 (269-308)||(43834144-43834183)
chr8 (275-325)||(1239531-1239581)
chr8 (263-325)||(27498491-27498553)
chr8 (269-318)||(20559880-20559929)
chr8 (269-318)||(20571442-20571491)
chr8 (270-311)||(26469338-26469379)
chr8 (272-325)||(40619200-40619253)
chr8 (269-325)||(7883368-7883423)
chr8 (275-319)||(15344217-15344261)
chr8 (275-319)||(15433282-15433326)
chr8 (275-319)||(15524586-15524630)
chr8 (269-325)||(20553373-20553429)
chr8 (269-325)||(40211432-40211488)
[»] chr2 (23 HSPs)
chr2 (170-341)||(12648038-12648208)
chr2 (255-341)||(43397234-43397320)
chr2 (177-340)||(29574747-29574910)
chr2 (270-340)||(24461351-24461421)
chr2 (269-341)||(36691788-36691859)
chr2 (270-341)||(3308853-3308923)
chr2 (270-340)||(4904261-4904330)
chr2 (269-342)||(6358990-6359063)
chr2 (257-318)||(19596013-19596073)
chr2 (269-341)||(11985345-11985416)
chr2 (269-341)||(29279685-29279756)
chr2 (269-315)||(14955436-14955482)
chr2 (263-341)||(31788364-31788442)
chr2 (269-337)||(14423236-14423303)
chr2 (269-341)||(32448736-32448808)
chr2 (269-341)||(38445080-38445151)
chr2 (269-320)||(31128914-31128965)
chr2 (169-207)||(18107983-18108021)
chr2 (269-341)||(9169373-9169443)
chr2 (259-320)||(16261268-16261328)
chr2 (269-325)||(4041724-4041780)
chr2 (269-325)||(4099017-4099073)
chr2 (281-341)||(31210722-31210781)
[»] scaffold0009 (1 HSPs)
scaffold0009 (170-342)||(58192-58363)
[»] chr3 (24 HSPs)
chr3 (170-342)||(50194396-50194567)
chr3 (269-342)||(29921956-29922029)
chr3 (269-342)||(29971109-29971182)
chr3 (271-325)||(12947410-12947464)
chr3 (269-342)||(53508124-53508197)
chr3 (271-342)||(35175304-35175376)
chr3 (257-325)||(33579759-33579827)
chr3 (269-341)||(36461545-36461616)
chr3 (269-341)||(42460650-42460720)
chr3 (269-340)||(47896055-47896125)
chr3 (276-325)||(44804934-44804983)
chr3 (269-341)||(20987913-20987984)
chr3 (278-341)||(52116121-52116187)
chr3 (269-336)||(22290841-22290908)
chr3 (170-211)||(29921857-29921898)
chr3 (170-211)||(29971010-29971051)
chr3 (269-341)||(43488704-43488775)
chr3 (255-341)||(16235307-16235393)
chr3 (269-337)||(51487004-51487073)
chr3 (269-318)||(54148892-54148941)
chr3 (269-301)||(7887562-7887594)
chr3 (269-341)||(9797643-9797714)
chr3 (269-341)||(21289935-21290006)
chr3 (269-325)||(52923246-52923302)
[»] chr5 (21 HSPs)
chr5 (269-338)||(10332668-10332737)
chr5 (256-325)||(8985062-8985132)
chr5 (269-341)||(2979427-2979498)
chr5 (269-341)||(14726575-14726647)
chr5 (269-341)||(11977049-11977122)
chr5 (269-341)||(6216802-6216873)
chr5 (269-341)||(8096611-8096683)
chr5 (269-337)||(24229902-24229970)
chr5 (269-341)||(28541027-28541098)
chr5 (269-341)||(39567198-39567269)
chr5 (263-341)||(13007126-13007203)
chr5 (269-341)||(15571389-15571460)
chr5 (269-341)||(19103588-19103659)
chr5 (269-319)||(7036131-7036181)
chr5 (255-325)||(8088342-8088412)
chr5 (263-341)||(9113839-9113916)
chr5 (269-341)||(26878195-26878264)
chr5 (170-211)||(8985180-8985221)
chr5 (269-341)||(34945325-34945395)
chr5 (269-341)||(38597700-38597771)
chr5 (255-339)||(41749211-41749295)
[»] chr1 (22 HSPs)
chr1 (256-342)||(47132793-47132879)
chr1 (270-341)||(16161739-16161809)
chr1 (269-341)||(23291756-23291828)
chr1 (255-341)||(44543163-44543248)
chr1 (269-342)||(9341630-9341703)
chr1 (269-341)||(1602022-1602093)
chr1 (269-341)||(1742187-1742259)
chr1 (272-320)||(12635076-12635124)
chr1 (269-333)||(37720243-37720306)
chr1 (255-326)||(15492184-15492254)
chr1 (269-342)||(13075749-13075821)
chr1 (269-341)||(13144926-13144997)
chr1 (269-341)||(21947732-21947803)
chr1 (272-341)||(31918899-31918966)
chr1 (269-342)||(32679211-32679285)
chr1 (232-334)||(36775838-36775938)
chr1 (269-341)||(49626816-49626889)
chr1 (257-341)||(8212024-8212107)
chr1 (269-341)||(40163614-40163685)
chr1 (269-320)||(29738770-29738821)
chr1 (173-211)||(32679342-32679380)
chr1 (269-325)||(7337792-7337848)
[»] chr7 (25 HSPs)
chr7 (269-338)||(41553554-41553623)
chr7 (269-338)||(41553899-41553968)
chr7 (269-338)||(41554244-41554313)
chr7 (269-341)||(28476126-28476197)
chr7 (170-341)||(22742745-22742914)
chr7 (235-341)||(24350958-24351063)
chr7 (269-337)||(38051185-38051253)
chr7 (269-320)||(35665266-35665317)
chr7 (269-334)||(37837579-37837644)
chr7 (269-341)||(48061329-48061399)
chr7 (270-341)||(12141422-12141491)
chr7 (269-341)||(13797046-13797117)
chr7 (269-341)||(30756933-30757004)
chr7 (269-341)||(34899721-34899792)
chr7 (269-337)||(39171708-39171776)
chr7 (269-341)||(40993088-40993159)
chr7 (269-325)||(47590217-47590273)
chr7 (270-337)||(5078513-5078579)
chr7 (269-342)||(11343703-11343777)
chr7 (257-341)||(19404871-19404952)
chr7 (272-341)||(42978518-42978587)
chr7 (255-315)||(1749284-1749343)
chr7 (269-341)||(9450251-9450322)
chr7 (270-302)||(26583644-26583676)
chr7 (269-341)||(48316926-48316997)
[»] chr6 (19 HSPs)
chr6 (255-342)||(30493420-30493506)
chr6 (269-341)||(30776570-30776641)
chr6 (270-341)||(32191845-32191916)
chr6 (264-341)||(11321583-11321659)
chr6 (255-316)||(28981067-28981128)
chr6 (269-341)||(8102624-8102695)
chr6 (263-341)||(34018459-34018536)
chr6 (270-342)||(1933809-1933882)
chr6 (233-318)||(22571358-22571442)
chr6 (232-320)||(26588602-26588689)
chr6 (280-342)||(7976293-7976355)
chr6 (235-325)||(3913703-3913794)
chr6 (269-341)||(33053282-33053353)
chr6 (269-341)||(1523310-1523377)
chr6 (269-341)||(68115-68186)
chr6 (277-341)||(127583-127646)
chr6 (269-341)||(545928-545999)
chr6 (269-341)||(12170400-12170471)
chr6 (232-316)||(14801074-14801158)
[»] chr4 (32 HSPs)
chr4 (269-342)||(9713831-9713905)
chr4 (257-325)||(47158139-47158207)
chr4 (269-341)||(13634039-13634110)
chr4 (269-344)||(22300768-22300844)
chr4 (269-341)||(26633785-26633856)
chr4 (269-320)||(9643304-9643355)
chr4 (288-339)||(42032640-42032691)
chr4 (271-341)||(2520703-2520772)
chr4 (239-301)||(28857272-28857334)
chr4 (275-325)||(51888346-51888396)
chr4 (271-316)||(4937757-4937802)
chr4 (255-320)||(22038935-22039000)
chr4 (232-342)||(52944198-52944304)
chr4 (269-341)||(5119263-5119334)
chr4 (269-341)||(21686355-21686426)
chr4 (269-316)||(9634598-9634645)
chr4 (269-320)||(22558598-22558649)
chr4 (270-325)||(29961054-29961109)
chr4 (278-341)||(33920984-33921046)
chr4 (294-344)||(33332685-33332735)
chr4 (275-325)||(47320531-47320581)
chr4 (257-314)||(31359893-31359950)
chr4 (235-342)||(36161603-36161705)
chr4 (270-315)||(37188694-37188739)
chr4 (257-314)||(38166373-38166430)
chr4 (270-315)||(52978749-52978794)
chr4 (269-341)||(4142869-4142939)
chr4 (273-341)||(19853626-19853693)
chr4 (269-341)||(22611107-22611178)
chr4 (269-301)||(33332756-33332788)
chr4 (269-325)||(35348229-35348284)
chr4 (235-311)||(36204525-36204601)
[»] scaffold0088 (1 HSPs)
scaffold0088 (269-341)||(50690-50761)
[»] scaffold0017 (1 HSPs)
scaffold0017 (269-341)||(32861-32933)
[»] scaffold0136 (2 HSPs)
scaffold0136 (257-341)||(10156-10238)
scaffold0136 (269-325)||(37950-38006)
[»] scaffold0445 (1 HSPs)
scaffold0445 (269-341)||(1247-1319)
[»] scaffold0262 (1 HSPs)
scaffold0262 (269-342)||(1932-2003)
[»] scaffold0039 (1 HSPs)
scaffold0039 (269-342)||(93003-93079)
[»] scaffold0603 (1 HSPs)
scaffold0603 (269-325)||(7619-7675)
[»] scaffold0127 (1 HSPs)
scaffold0127 (269-325)||(15395-15451)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 9e-92; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 78 - 344
Target Start/End: Original strand, 3240090 - 3240357
Alignment:
Q  78 tcactaacatacaacaactgaaaaaatgcatttgcatttaaaatttgaacgtaagcattcatcacagctctctacaattctttaccaacaatttctctct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||    
T  3240090 tcactaacatacaacaactgaaaaaatgcatttgcatttaaaatttgaacgtaagcaatcaacacagctctctacaattctttaccaagaatttttctct 3240189  T
Q  178 aagttttctttctctttcagtcgttgaggaggggcagttttagatcannnnnnngatctagaatcacccatccgtat-tcttttttcatttcctttcaat 276  Q
    |||||||||||||||| | |||||||||||||||   |||||| |||        ||||||||||||||||| | || | ||||||||||||||||||||    
T  3240190 aagttttctttctcttccggtcgttgaggaggggtgattttaggtcattttttttatctagaatcacccatctgcatcttttttttcatttcctttcaat 3240289  T
Q  277 ctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctgtg 344  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  3240290 ctaaataagtgatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcgtctgtg 3240357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 21237702 - 21237752
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  21237702 tttcaatctaaataagtgatttccaaatatatcaagtgttttcctttgtgt 21237752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 14585605 - 14585676
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || ||| ||||||| |||||||| |||| ||||| ||||||||||||||    
T  14585605 ctttcaatctaaataagtgattttcacatacatcaagt-ttttctttcgtgttttttcttgatttcgtcgtct 14585676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 18890889 - 18890818
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || ||  ||||||| ||||||||||||| ||||| ||||||||||||||    
T  18890889 ctttcaatctaaataagtgattttcacatgcatcaagt-ttttcttttgtgttttttcgtgatttcgtcgtct 18890818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 23230550 - 23230620
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||||||||||  ||||  ||||||||||||||    
T  23230550 ctttcaatctaaataagtggttttcatatctatcaagttttttcttttgtg--tttttgtgatttcgtcgtct 23230620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 24186858 - 24186786
Alignment:
Q  255 tcttttttcat--ttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||||||||  || |||| |||||||||||||||||| |||||||||||||| ||| ||||||||| ||||    
T  24186858 tcttttttcatcttttctttaaatctaaataagtgattttcatatatatcaagtttttgcttttgtgtgtttt 24186786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 36948633 - 36948565
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||| |||||| ||||||||||||||||||| ||| |||||||||||| | ||| ||||||||| ||||    
T  36948633 ttttctcattttctttcaatctaaataagtggttttcatatatatcaaatttttccttttgtgtttttt 36948565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 8443704 - 8443649
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||| |||||||||||||||||||| ||||||| || |||||||||||||| ||||    
T  8443704 ctttcgatctaaataagtgatttccacatatatccag-gttttcttttgtgtttttt 8443649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 8826116 - 8826187
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||| |||||||||||||||||  | | ||||||||| ||||||||||| | ||||| |||||||||||||||    
T  8826116 tttcgatctaaataagtgatttttacacatatcaagttttttcttttgt-ttttttcgtgatttcgtcgtctg 8826187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 24099446 - 24099369
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatt----ttcatgatttcgtcgtctg 342  Q
    ||||| || ||||||||||||||||| ||| ||||||||||||||||| ||| ||    ||| |||||||||||||||    
T  24099446 ctttcgatttaaataagtgatttccacatagatcaagtgttttcttttttgttttattcttcgtgatttcgtcgtctg 24099369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 41896416 - 41896487
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || ||  ||||||| |||||||| |||| ||||| ||||||| ||||||    
T  41896416 ctttcaatctaaataagtgattttcacatccatcaagt-ttttctttcgtgttttttcgtgatttcatcgtct 41896487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 43834183 - 43834144
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgt 308  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  43834183 ctttcaatctaaataagtgatatccacatatatcaagtgt 43834144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 1239581 - 1239531
Alignment:
Q  275 atctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||| || | |||||| |||||||||||||||| ||||    
T  1239581 atctaaataagtgattttcacaaatatcaggtgttttcttttgtgtttttt 1239531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 27498553 - 27498491
Alignment:
Q  263 catttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||| |||||||| ||||||||||||||  | ||||||||||| ||| ||||| ||||||||    
T  27498553 cattttctttcaatttaaataagtgatttttacatatatcaagtttttccttttatgtatttt 27498491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 20559929 - 20559880
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgt 318  Q
    ||||||||||||||||||||||| || || |||||||| ||| |||||||    
T  20559929 ctttcaatctaaataagtgattttcacatctatcaagtttttccttttgt 20559880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 20571491 - 20571442
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgt 318  Q
    ||||||||||||||||||||||| || || |||||||| ||| |||||||    
T  20571491 ctttcaatctaaataagtgattttcacatctatcaagtttttccttttgt 20571442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 26469379 - 26469338
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgtttt 311  Q
    |||||||||||||||||||||| || ||||||||||| ||||    
T  26469379 tttcaatctaaataagtgattttcacatatatcaagtttttt 26469338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 40619253 - 40619200
Alignment:
Q  272 tcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||||||||||||||||| || ||||||||||| |||  |||||||| ||||    
T  40619253 tcaatctaaataagtgattttcacatatatcaagtttttctttttgtgtttttt 40619200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 7883423 - 7883368
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| || || |||||||| ||||||||||||| ||||    
T  7883423 ctttcaatctaaataagtggttttcacatctatcaagt-ttttcttttgtgtttttt 7883368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 15344217 - 15344261
Alignment:
Q  275 atctaaataagtgatttccatatatatcaagtgttttcttttgtg 319  Q
    ||||||||||||||||| || | |||||||| |||||||||||||    
T  15344217 atctaaataagtgattttcacaaatatcaagcgttttcttttgtg 15344261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 15433282 - 15433326
Alignment:
Q  275 atctaaataagtgatttccatatatatcaagtgttttcttttgtg 319  Q
    ||||||||||||||||| || | |||||||| |||||||||||||    
T  15433282 atctaaataagtgattttcacaaatatcaagcgttttcttttgtg 15433326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 15524586 - 15524630
Alignment:
Q  275 atctaaataagtgatttccatatatatcaagtgttttcttttgtg 319  Q
    ||||||||||||||||| || | |||||||| |||||||||||||    
T  15524586 atctaaataagtgattttcacaaatatcaagcgttttcttttgtg 15524630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 20553429 - 20553373
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||||||| || || ||| |||| ||| ||||||||| ||||    
T  20553429 ctttcaatctaaataagtgattttcacatctatgaagtttttccttttgtgtttttt 20553373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 40211488 - 40211432
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||| | ||| || || |||||||| ||||||||||||| ||||    
T  40211488 ctttcaatctaaataagcggttttcacatctatcaagtattttcttttgtgtttttt 40211432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 170 - 341
Target Start/End: Complemental strand, 12648208 - 12648038
Alignment:
Q  170 ttctctctaagttttctttctctttcagtcgttgaggaggggcagttttagatcannnnnnngatctagaatcacccatccgtattcttttttca-tttc 268  Q
    |||||| |||||||||||||||||| | ||||||||||||||  ||||||| |||       || |||||||||||| |||  || ||||||||  |||     
T  12648208 ttctctttaagttttctttctcttttactcgttgaggaggggtggttttaggtcatttttt-gacctagaatcacccctccacat-cttttttctctttt 12648111  T
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  12648110 ctttcaatctaaataagtgatttccacatatatcaagtgttttcttttgtgtattttcgtgatttcatcgtct 12648038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 43397320 - 43397234
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||| | ||| ||||||||||||||||||| ||| || ||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  43397320 tctttttcccttttctttcaatctaaataagtggttttcacatatatcaagttttttcttttgtgttttttcgtgatttcgtcgtct 43397234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 340
Target Start/End: Complemental strand, 29574910 - 29574747
Alignment:
Q  177 taagttttctttctctttcagtcgttgaggaggggcagttttagatcannnnnnngatctagaatcacccatccgtattcttttttc-atttcctttcaa 275  Q
    |||||||| ||||||||||| |||| |||||||||  |||||||||||       || |||||||||||| |  | || |||||||| |||| |||||||    
T  29574910 taagttttatttctctttcactcgtcgaggaggggtggttttagatcatttttt-gacctagaatcaccc-tgtgcatccttttttccattttctttcaa 29574813  T
Q  276 tctaaataagtgatttccatatatatcaagtgttttcttttgtgtat--tttcatgatttcgtcgtc 340  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| |  |||| |||||||||||||    
T  29574812 tctaaataagtgatttccacatatatcaagtgtttt-ttttgtgttttgtttcgtgatttcgtcgtc 29574747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 24461351 - 24461421
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtc 340  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| | ||||| |||||||    
T  24461351 tttcaatctaaataagtgatttccacatatatcaagtgtttttttttgtgtttttacgtgattccgtcgtc 24461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 36691788 - 36691859
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| |||| | ||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  36691788 ctttcaatctaaataagtggtttc-acatatatcaagttttttcttttgtgttttttcgtgatttcgtcgtct 36691859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 3308853 - 3308923
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||||||||| || ||| ||||||| |||||||| |||| ||||| ||||||||||||||    
T  3308853 tttcaatctaaataagtgattttcacatacatcaagt-ttttctttcgtgttttttcgtgatttcgtcgtct 3308923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 4904330 - 4904261
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtc 340  Q
    |||||||||||||||||| ||| || ||||||||||| ||||||||||||| ||||  |||||||||||||    
T  4904330 tttcaatctaaataagtggttttcacatatatcaagttttttcttttgtgt-tttttgtgatttcgtcgtc 4904261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 6359063 - 6358990
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||| |||||||||| |||| | ||||||||||| ||||| ||||||| ||||| |||||| ||||||||    
T  6359063 ctttcaatttaaataagtgttttctacatatatcaagttttttcctttgtgttttttcgtgattttgtcgtctg 6358990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 19596073 - 19596013
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgt 318  Q
    |||||||||||| ||||||| |||||||||||||| || |||||||||||||||| ||||||    
T  19596073 ttttttcatttc-tttcaatgtaaataagtgattttcacatatatcaagtgttttattttgt 19596013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 11985416 - 11985345
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||| |||||||||| ||| || ||||||||||| ||||||||||||| ||||  ||||||||||||||    
T  11985416 ctttcaatttaaataagtggttttcacatatatcaagttttttcttttgtgtgtttt-gtgatttcgtcgtct 11985345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 29279756 - 29279685
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||||||||||| ||| ||||||||| ||||  ||||||||||||||    
T  29279756 ctttcaatctaaataagtggttttcacatatatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 29279685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 14955436 - 14955482
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttt 315  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  14955436 ctttcaatctaaataagtgatttccacatacatcaagttttttcttt 14955482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 31788364 - 31788442
Alignment:
Q  263 catttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||| ||||||||||||||||||||||| || || ||||||||  || ||||||||| ||||  | ||||||||||||    
T  31788364 cattttctttcaatctaaataagtgattttcacatctatcaagttgttccttttgtgtttttttgtaatttcgtcgtct 31788442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 14423236 - 14423303
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtc 337  Q
    |||||||||||||||||||  ||||| ||||||||||| ||||||| ||| | ||||| ||||||||||    
T  14423236 ctttcaatctaaataagtgggttccacatatatcaagt-ttttcttgtgttttttttcttgatttcgtc 14423303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 32448808 - 32448736
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||| ||||||||||||||||| ||   |||||||| ||||| |||||||| ||||  ||||||||||||||    
T  32448808 ctttcgatctaaataagtgattttcaccaatatcaagcgttttattttgtgtttttttgtgatttcgtcgtct 32448736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 38445080 - 38445151
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||| |||||||||| ||| || || |||||||| ||||||||||||| ||||  ||||||||||||||    
T  38445080 ctttcaatataaataagtggttttcacatctatcaagttttttcttttgtgt-tttttgtgatttcgtcgtct 38445151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 31128965 - 31128914
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    ||||||||||||||||||| ||| || ||||||||||| ||| |||||||||    
T  31128965 ctttcaatctaaataagtggttttcacatatatcaagtttttccttttgtgt 31128914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 18108021 - 18107983
Alignment:
Q  169 tttctctctaagttttctttctctttcagtcgttgagga 207  Q
    |||||||||||||||||||||||||||| || |||||||    
T  18108021 tttctctctaagttttctttctctttcattcattgagga 18107983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 9169443 - 9169373
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||  ||||  ||||||||||||||    
T  9169443 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtg--tttttgtgatttcgtcgtct 9169373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 16261268 - 16261328
Alignment:
Q  259 ttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    |||||||||| |||||||||||||||||| |||||| |||| | |||| | |||||||||||    
T  16261268 ttttcatttc-tttcaatctaaataagtggtttccacatatttaaagtttattcttttgtgt 16261328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 4041780 - 4041724
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||    
T  4041780 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgtttttt 4041724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 4099017 - 4099073
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||    
T  4099017 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgtttttt 4099073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 31210781 - 31210722
Alignment:
Q  281 ataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||| ||| || || |||||||| ||||||||||||| |||| |||||||||||||||    
T  31210781 ataagtggttttcacatctatcaagttttttcttttgtgt-tttttatgatttcgtcgtct 31210722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 342
Target Start/End: Complemental strand, 58363 - 58192
Alignment:
Q  170 ttctctctaagttttctttctctttcagtcgttgaggaggggcagttttagatcannnnnnngatctagaatcacccatccgtattcttttttcatttcc 269  Q
    |||||||||||||||| || ||||||| |||| |||||||||  ||||||| |||       || ||| |||||||| || | || |||||||| ||| |    
T  58363 ttctctctaagttttcgttttctttcactcgtcgaggaggggtggttttaggtcatttttt-gacctaaaatcacccctctgcatccttttttccttttc 58265  T
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||| |||||||    
T  58264 tttcaatctaaataagtgatttccacatatatcaagtgttttcttttgtgctttttcgtgatttcatcgtctg 58192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 342
Target Start/End: Complemental strand, 50194567 - 50194396
Alignment:
Q  170 ttctctctaagttttctttctctttcagtcgttgaggaggggcagttttagatcannnnnnngatctagaatcacccatccgtattcttttttcatttcc 269  Q
    |||||||||||||||| |||||||||| |||| ||| ||| |  |||||||||||       || ||| |||||||  || | || |||||| | ||  |    
T  50194567 ttctctctaagttttcgttctctttcactcgtcgagaaggagtggttttagatcatttttt-gacctaaaatcacctctctgcatcctttttcccttctc 50194469  T
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  50194468 tttcaatctaaataagtgatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcgtctg 50194396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 29921956 - 29922029
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  29921956 ctttcaatctaaataagtgatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcgtctg 29922029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 29971109 - 29971182
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  29971109 ctttcaatctaaataagtgatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcgtctg 29971182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 12947464 - 12947410
Alignment:
Q  271 ttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  12947464 ttcaatctaaataagtgatttccacatatatcaagtgttttcttttgtgtttttt 12947410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 53508124 - 53508197
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||| |||||||||||||| || ||||||||||| ||||||| ||||| ||||| |||||||||||||||    
T  53508124 ctttcaatataaataagtgattttcacatatatcaagttttttcttctgtgttttttcgtgatttcgtcgtctg 53508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 35175304 - 35175376
Alignment:
Q  271 ttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtg-tattttcatgatttcgtcgtctg 342  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||| | |||||||||||||    
T  35175304 ttcaatctaaacaagtgatttccacatatatcaagtgttttcttttgtgtttttttcgtaatttcgtcgtctg 35175376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 33579759 - 33579827
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||||| ||| ||||||||||||| ||||    
T  33579759 tttttccattttctttcaatctaaataagtgattttcacatatatctagttttttcttttgtgtttttt 33579827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 36461616 - 36461545
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || || |||||||| ||||||||||||| ||||  ||||||||||||||    
T  36461616 ctttcaatctaaataagtgattttcacatctatcaagttttttcttttgtgt-tttttgtgatttcgtcgtct 36461545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 42460650 - 42460720
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||| |||| ||||| ||||||||||||||    
T  42460650 ctttcaatctaaataagtgatttccacatacatcaagt-ttttctttcgtgt-ttttcgtgatttcgtcgtct 42460720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 47896055 - 47896125
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtc 340  Q
    ||||||||||||||||||| ||| || ||||||||||| ||||||||||||| ||||  |||||||||||||    
T  47896055 ctttcaatctaaataagtggttttcacatatatcaagttttttcttttgtgt-tttttgtgatttcgtcgtc 47896125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 44804934 - 44804983
Alignment:
Q  276 tctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  44804934 tctaaataagtgatttccacatatatcaagtgttttcttctgtgtttttt 44804983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 20987984 - 20987913
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||| |||||||||||||| || ||||||| ||| ||||||||||||| ||||  ||||||||||||||    
T  20987984 ctttcaatttaaataagtgattttcaaatatatcgagttttttcttttgtgt-tttttgtgatttcgtcgtct 20987913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 52116187 - 52116121
Alignment:
Q  278 taaataagtgatttccatatatatcaagtgttttcttttgtg---tattttcatgatttcgtcgtct 341  Q
    |||||||||||||| || ||||||||||| ||||||||||||   | ||||||||||||||||||||    
T  52116187 taaataagtgattttcacatatatcaagttttttcttttgtgtttttttttcatgatttcgtcgtct 52116121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 22290841 - 22290908
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgt 336  Q
    |||| |||||||||||||||||| || |||||| || | ||| ||||||||| |||||||||||||||    
T  22290841 cttttaatctaaataagtgattttcacatatattaaatttttccttttgtgttttttcatgatttcgt 22290908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 29921857 - 29921898
Alignment:
Q  170 ttctctctaagttttctttctctttcagtcgttgaggagggg 211  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  29921857 ttctctctaagttttctttctctttcattcgtcgaggagggg 29921898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 29971010 - 29971051
Alignment:
Q  170 ttctctctaagttttctttctctttcagtcgttgaggagggg 211  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  29971010 ttctctctaagttttctttctctttcattcgtcgaggagggg 29971051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 43488775 - 43488704
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||||| ||||||| ||||  ||||||||||||||    
T  43488775 ctttcaatctaaataagtggttttcacatctatcaagttttttcatttgtgt-tttttgtgatttcgtcgtct 43488704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 16235307 - 16235393
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtga-tttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||| |||  ||||||||||||||||||| ||| || ||| ||||||| |||||||| |||| ||||| ||||||| ||||||    
T  16235307 tcttttttccttttttttcaatctaaataagtgatttttcacatacatcaagt-ttttctttcgtgttttttcgtgatttcatcgtct 16235393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 51487004 - 51487073
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatc-aagtgttttcttttgtgtattttcatgatttcgtc 337  Q
    |||||||||||||||||||||||  ||||| ||| |||| |||||||  |||| ||||| ||||||||||    
T  51487004 ctttcaatctaaataagtgatttttatatacatcaaagttttttcttgcgtgttttttcgtgatttcgtc 51487073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 54148892 - 54148941
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgt 318  Q
    ||||||||||||||||||| ||| || || |||||||| |||||||||||    
T  54148892 ctttcaatctaaataagtggttttcacatctatcaagttttttcttttgt 54148941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 7887594 - 7887562
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatat 301  Q
    ||||||||||||||||||||||||||| |||||    
T  7887594 ctttcaatctaaataagtgatttccatgtatat 7887562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 9797714 - 9797643
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| | | ||||||||| ||||  ||||||||||||||    
T  9797714 ctttcaatctaaataagtggttttcacatctatcaagtttctacttttgtgt-tttttgtgatttcgtcgtct 9797643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 21290006 - 21289935
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||| |||||||||||||  | ||| ||||||| |||||||| |||| ||||  ||||||||||||||    
T  21290006 ctttcaatccaaataagtgattttaacatacatcaagt-ttttctttcgtgtttttttgtgatttcgtcgtct 21289935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 52923302 - 52923246
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||    
T  52923302 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgtctttt 52923246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 10332737 - 10332668
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcg 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  10332737 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgttttttcgtgattttgtcg 10332668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 8985132 - 8985062
Alignment:
Q  256 cttttttcatttcctttcaatctaaa-taagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  8985132 ctttttccattttctttcaatctaaaataagtgatttccacatatatcaagtgttttcttttgtgtttttt 8985062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 2979498 - 2979427
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || ||| ||||||| |||||||| |||| ||||| ||||||||||||||    
T  2979498 ctttcaatctaaataagtgattttcacatacatcaagt-ttttctttcgtgttttttcgtgatttcgtcgtct 2979427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 14726647 - 14726575
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||| |||||| ||| |||||||||||||| ||||||| ||||| ||||  ||||||||||||||    
T  14726647 ctttcaatctaactaagtggttttcatatatatcaagttttttcttatgtgtttttttgtgatttcgtcgtct 14726575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 11977122 - 11977049
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtg-tattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||||||||||| |||||||||||| | ||||  ||||||||||||||    
T  11977122 ctttcaatctaaataagtggttttcacatatatcaagttttttcttttgtgttttttttgtgatttcgtcgtct 11977049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 6216802 - 6216873
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||||||||||| ||| ||||||||| ||||  ||||||||||||||    
T  6216802 ctttcaatctaaataagtggttttcacatatatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 6216873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 8096683 - 8096611
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||||||||||| ||||||||||||| |||   ||||||| ||||||    
T  8096683 ctttcaatctaaataagtggttttcacatatatcaagttttttcttttgtgtttttgtgtgatttcatcgtct 8096611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 24229970 - 24229902
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtc 337  Q
    ||||||||||||||||||||||| || || ||||||||  |||||||||||| ||||  ||||||||||    
T  24229970 ctttcaatctaaataagtgattttcacatctatcaagttgtttcttttgtgtttttttgtgatttcgtc 24229902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 28541098 - 28541027
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || ||| ||||||| |||||||| |||| ||||| ||||||| ||||||    
T  28541098 ctttcaatctaaataagtgattttcacatacatcaagt-ttttctttcgtgttttttcgtgatttcatcgtct 28541027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 39567198 - 39567269
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || ||| ||||||| |||||||| |||| ||||| |||| |||||||||    
T  39567198 ctttcaatctaaataagtgattttcacatacatcaagt-ttttctttcgtgttttttcgtgatctcgtcgtct 39567269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 13007126 - 13007203
Alignment:
Q  263 catttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||| ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  13007126 cattttctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 13007203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 15571389 - 15571460
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||||||||||| ||| |||||||  |||||  ||||||||||||||    
T  15571389 ctttcaatctaaataagtggttttcacatatatcaagtttttccttttgt-aatttttgtgatttcgtcgtct 15571460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 19103659 - 19103588
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||| ||||||||||||||||| || ||| ||||||| ||||||||  ||| ||||| ||||||||||||||    
T  19103659 ctttcgatctaaataagtgattttcacatacatcaagt-ttttctttcatgttttttcgtgatttcgtcgtct 19103588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 7036131 - 7036181
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtg 319  Q
    ||||||||||||||||||| ||| || ||||||||| | ||||||||||||    
T  7036131 ctttcaatctaaataagtggttttcacatatatcaatttttttcttttgtg 7036181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 8088412 - 8088342
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||||||  || ||||| ||||||||||||||||| || | |||||||  |||||||||||||| ||||    
T  8088412 tcttttttctctttctttcgatctaaataagtgattttcacaaatatcaaacgttttcttttgtgtttttt 8088342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 9113916 - 9113839
Alignment:
Q  263 catttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||| |||| |||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  9113916 cattttcttttaatctaaataagtggttttcacatctatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 9113839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 26878264 - 26878195
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||| ||||||| |||||||||||   ||||  ||||||||||||||    
T  26878264 ctttcaatctaaataagtggttttcacataaatcaagttttttcttttgt---tttttgtgatttcgtcgtct 26878195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 8985221 - 8985180
Alignment:
Q  170 ttctctctaagttttctttctctttcagtcgttgaggagggg 211  Q
    |||||||||||||||| |||||||||| ||||| ||||||||    
T  8985221 ttctctctaagttttcgttctctttcactcgtttaggagggg 8985180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 34945325 - 34945395
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||  ||||  ||||||||||||||    
T  34945325 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtg--tttttgtgatttcgtcgtct 34945395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 38597700 - 38597771
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||| |||||||||||||| || || |||||||| ||| ||||||||  ||||  ||||||||||||||    
T  38597700 ctttcaatttaaataagtgattttcacatctatcaagtttttccttttgtg-ctttttgtgatttcgtcgtct 38597771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 41749211 - 41749295
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgt 339  Q
    |||||||||  || |||| |||||||||||||  ||| || ||||||||||| |||| ||||| |  ||||||||||||| ||||    
T  41749211 tcttttttccatttcttttaatctaaataagttgttttcacatatatcaagttttttattttgcgctttttcatgatttcatcgt 41749295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 47132793 - 47132879
Alignment:
Q  256 cttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||| | ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||| |||||||||||||||    
T  47132793 ctttttcccttttctttcaatctaaataagtgatttctacatatatcaagtgttttcttttgtgctttttcgtgatttcgtcgtctg 47132879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 16161739 - 16161809
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||||    
T  16161739 tttcaatctaaataagtgatttccacatacatcaagt-ttttcttttgtgttttttcgtgatttcgtcgtct 16161809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 23291828 - 23291756
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||||||||||| ||||||||||||| ||||  ||||||||||||||    
T  23291828 ctttcaatctaaataagtggttttcacatatatcaagttttttcttttgtgtttttttgtgatttcgtcgtct 23291756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 44543163 - 44543248
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||  || ||||| ||||||||||||||||| || | ||||||||||||||||||||||| ||||  ||||||||||||||    
T  44543163 tcttttttccctttctttcgatctaaataagtgattttcacaaatatcaagtgttttcttttgtgt-tttttgtgatttcgtcgtct 44543248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 9341630 - 9341703
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||| ||||||||  |||| || ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  9341630 ctttcaatataaataagaaattttcacatatatcaagtgttttcttttgtgtttttacgtgatttcgtcgtctg 9341703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 1602022 - 1602093
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||| ||||||||||||| |||| ||||||||||||| || ||||| |||| ||||||||||||||||||||    
T  1602022 ctttcgatctaaataagtggtttctatatatatcaagt-ttatctttcgtgtcttttcatgatttcgtcgtct 1602093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 1742187 - 1742259
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||||||||||| ||||||||||| | ||||  ||||||||||||||    
T  1742187 ctttcaatctaaataagtggttttcacatatatcaagttttttcttttgtatttttttgtgatttcgtcgtct 1742259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 12635076 - 12635124
Alignment:
Q  272 tcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||    
T  12635076 tcaatctaaataagtgattttcacatatatcaagtgttttcttttgtgt 12635124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 37720306 - 37720243
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgattt 333  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||| ||||||    
T  37720306 ctttcaatctaaataagtgatttccacatacatcaagt-ttttcttttgtgttttttcgtgattt 37720243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 15492184 - 15492254
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttc 326  Q
    ||||||| |||||| ||||||||||||||| |||||| || ||||||||||| ||||||||||||| |||||    
T  15492184 tctttttccatttc-tttcaatctaaataaatgattttcacatatatcaagttttttcttttgtgttttttc 15492254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 13075821 - 13075749
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    ||||||||||||||||||||||  ||||||| | |||| ||||||||||||| ||||| ||||||| |||||||    
T  13075821 ctttcaatctaaataagtgattcacatatatct-aagtattttcttttgtgttttttcgtgatttcatcgtctg 13075749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 13144997 - 13144926
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| |||||||||||| | ||| ||||||||| ||||  ||||||||||||||    
T  13144997 ctttcaatctaaataagtggttttcatatatatcaactttttccttttgtgt-tttttttgatttcgtcgtct 13144926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 21947803 - 21947732
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||||||||||||| ||||  ||||||||||||||    
T  21947803 ctttcaatctaaataagtggttttcacatctatcaagttttttcttttgtgt-tttttgtgatttcgtcgtct 21947732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 31918899 - 31918966
Alignment:
Q  272 tcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||| ||| || ||||||||||| ||||||||  ||||||||  ||||||||||||||    
T  31918899 tcaatctaaataagtggttttcacatatatcaagttttttcttt--tgtatttttgtgatttcgtcgtct 31918966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 32679285 - 32679211
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttctttt-gtgtattttcatgatttcgtcgtctg 342  Q
    |||||||| ||||||||||||||||| ||||||||| |||||| |||| || | ||||| ||||||| |||||||    
T  32679285 ctttcaatttaaataagtgatttccacatatatcaattgttttattttggttttttttcgtgatttcatcgtctg 32679211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 36775938 - 36775838
Alignment:
Q  232 gatctagaatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgat 331  Q
    ||||||||||||||| || | || ||||||||  || |||||||||||||||| |||||| || ||| ||||||| |||||||| |||| ||||| ||||    
T  36775938 gatctagaatcacccctctgcat-cttttttccctttctttcaatctaaataaatgattttcacatacatcaagt-ttttctttcgtgttttttcgtgat 36775841  T
Q  332 ttc 334  Q
    |||    
T  36775840 ttc 36775838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 49626816 - 49626889
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtg-tattttcatgatttcgtcgtct 341  Q
    ||||| ||||||||||||||||| || | |||||||| ||||||||||||| | ||||  ||||||||||||||    
T  49626816 ctttctatctaaataagtgattttcacaaatatcaagcgttttcttttgtgttttttttgtgatttcgtcgtct 49626889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 8212107 - 8212024
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||| ||| |||| |||||||||||||| ||| || ||||||||||| ||  ||||||||| ||||  ||||||||||||||    
T  8212107 ttttttccttttctttaaatctaaataagtggttttcacatatatcaagttttcccttttgtgt-tttttgtgatttcgtcgtct 8212024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 40163685 - 40163614
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||| || ||||||||||||||||| ||||||||| | ||||  | ||||| ||||||||||||||||||||    
T  40163685 ctttctatataaataagtgatttccacatatatcaaat-tttttatctgtgttttttcatgatttcgtcgtct 40163614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 29738821 - 29738770
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    ||||||||||||||||||| ||| || || |||||||| |||||||||||||    
T  29738821 ctttcaatctaaataagtggttttcacatctatcaagttttttcttttgtgt 29738770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 32679380 - 32679342
Alignment:
Q  173 tctctaagttttctttctctttcagtcgttgaggagggg 211  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  32679380 tctctaagttttctttctctttcactcgtcgaggagggg 32679342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 7337848 - 7337792
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||    
T  7337848 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgtttttt 7337792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 41553623 - 41553554
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcg 338  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  41553623 ctttcaatctaaataagggatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcg 41553554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 41553968 - 41553899
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcg 338  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  41553968 ctttcaatctaaataagggatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcg 41553899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 41554313 - 41554244
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcg 338  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  41554313 ctttcaatctaaataagggatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcg 41554244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 28476126 - 28476197
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || ||| ||||||| ||||||||||||| ||||| ||||||||||||||    
T  28476126 ctttcaatctaaataagtgattttcacatacatcaagt-ttttcttttgtgttttttcgtgatttcgtcgtct 28476197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 341
Target Start/End: Original strand, 22742745 - 22742914
Alignment:
Q  170 ttctctctaagttttctttctctttcagtcgttgaggaggggcagttttagatcannnnnnngatctagaatcacccatccgtattcttttttcatttcc 269  Q
    |||||||||||||||||| |||||||| || | |||||||||   |||||| |||        |||||||||||||| || | ||  ||||| |  || |    
T  22742745 ttctctctaagttttcttcctctttcattcatcgaggaggggtgattttaggtcaattttta-atctagaatcacccctctgcatcttttttcccctttc 22742843  T
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||||||||| || ||| ||||||| |||||||| || | ||||| ||||||||||||||    
T  22742844 tttcaatctaaataagtgattttcacatacatcaagt-ttttctttcgttttttttcgtgatttcgtcgtct 22742914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 341
Target Start/End: Complemental strand, 24351063 - 24350958
Alignment:
Q  235 ctagaatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttc 334  Q
    |||||||||||| |  | || ||||||||  || ||||||||||||||||||||||| || ||| ||||||| |||||||| |||| ||||  |||||||    
T  24351063 ctagaatcacccctgtgcatccttttttccctttctttcaatctaaataagtgattttcacatacatcaagt-ttttctttcgtgttttttagtgatttc 24350965  T
Q  335 gtcgtct 341  Q
    |||||||    
T  24350964 gtcgtct 24350958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 38051253 - 38051185
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtc 337  Q
    |||| |||||||||| ||| |||| ||||||||||||| |||| ||||||||  |||||||||||||||    
T  38051253 cttttaatctaaatatgtggtttcaatatatatcaagtttttttttttgtgttatttcatgatttcgtc 38051185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 35665317 - 35665266
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    ||||| |||||||||||||||||| | ||||||||| |||||||||||||||    
T  35665317 ctttcgatctaaataagtgatttcgaaatatatcaaatgttttcttttgtgt 35665266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 37837644 - 37837579
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttc 334  Q
    ||||||||||||||||||| ||| || |||||| |||| ||||||||||||| ||||  |||||||    
T  37837644 ctttcaatctaaataagtggtttacacatatattaagttttttcttttgtgtttttttgtgatttc 37837579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 48061329 - 48061399
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||||||||||||  ||||  ||||||||||||||    
T  48061329 ctttcaatctaaataagtggttttcacatctatcaagttttttcttttgtg--tttttgtgatttcgtcgtct 48061399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 12141491 - 12141422
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||||| ||| || || |||||||| ||||||||||||  ||||  ||||||||||||||    
T  12141491 tttcaatctaaataagtggttttcacatctatcaagttttttcttttgtg--tttttgtgatttcgtcgtct 12141422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 13797117 - 13797046
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||| ||||||||||||||  | || |||||||| ||| ||||||||| |||| |||||||||||||||    
T  13797117 ctttcaatttaaataagtgattttaacatctatcaagtttttccttttgtgt-tttttatgatttcgtcgtct 13797046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 30757004 - 30756933
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || || ||||| || ||| ||||||||| ||||  ||||||||||||||    
T  30757004 ctttcaatctaaataagtgattttcacatctatcatgtttttccttttgtgt-tttttgtgatttcgtcgtct 30756933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 34899792 - 34899721
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  34899792 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 34899721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 39171776 - 39171708
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtc 337  Q
    ||||| ||||||||||||| ||| ||||| |||||||| ||| ||||||||| ||||  ||||||||||    
T  39171776 ctttcgatctaaataagtggttttcatatctatcaagtttttccttttgtgtttttttgtgatttcgtc 39171708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 40993088 - 40993159
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  40993088 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 40993159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 47590217 - 47590273
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| || ||||||||||| ||| ||||||||| ||||    
T  47590217 ctttcaatctaaataagtggttttcacatatatcaagtttttccttttgtgtttttt 47590273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 5078579 - 5078513
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtc 337  Q
    |||| |||||||||||||||||  | ||||||||||| ||||||||||||| ||||| | ||||||||    
T  5078579 tttcgatctaaataagtgatttttacatatatcaagt-ttttcttttgtgttttttcgtaatttcgtc 5078513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 11343703 - 11343777
Alignment:
Q  269 ctttcaatctaaataagtgatttccat-atatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||||||||||||||||||  |  || |||||| | ||||||||||||| ||||| ||||||||| |||||    
T  11343703 ctttcaatctaaataagtgatttttaacatctatcaaatattttcttttgtgttttttcgtgatttcgttgtctg 11343777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 19404952 - 19404871
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||| ||| ||||||||||||||||||| ||| || ||| ||||||| ||| ||||||   |||||  ||||||||||||||    
T  19404952 ttttttccttttctttcaatctaaataagtggttttcacataaatcaagtttttccttttg---attttagtgatttcgtcgtct 19404871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 42978518 - 42978587
Alignment:
Q  272 tcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||| ||| || |||||| |||| ||| |||||||||  |||  ||||||||||||||    
T  42978518 tcaatctaaataagtggttttcacatatataaagtttttccttttgtgttcttttgtgatttcgtcgtct 42978587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 1749343 - 1749284
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttt 315  Q
    |||||||||  || ||||||||||||||||||||||| || ||| ||||||| ||||||||    
T  1749343 tcttttttccctttctttcaatctaaataagtgattttcacatacatcaagt-ttttcttt 1749284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 9450322 - 9450251
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || || |||| ||| | | ||||||||| ||||  ||||||||||||||    
T  9450322 ctttcaatctaaataagtgattttcacatctatctagtttctccttttgtgt-tttttgtgatttcgtcgtct 9450251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 26583644 - 26583676
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatc 302  Q
    |||||||||||||||||||||| ||||||||||    
T  26583644 tttcaatctaaataagtgattttcatatatatc 26583676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 48316997 - 48316926
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||| |||||||||| ||| || || |||||| | ||||||||||||| ||||  ||||||||||||||    
T  48316997 ctttcaatttaaataagtggttttcacatctatcaaattttttcttttgtgt-tttttgtgatttcgtcgtct 48316926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 30493420 - 30493506
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||||  || ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  30493420 tcttttttccctttctttcaaactaaataagtgatttccacatatatcaagtgttttcttttgtgt-ttttcgtgatttcctcgtctg 30493506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 30776570 - 30776641
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||||| ||||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||||    
T  30776570 ctttcaatctaaataagtaatttccacatacatcaagt-ttttcttttgtgttttttcgtgatttcgtcgtct 30776641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 32191916 - 32191845
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||| |||||||||||||||||| | ||||||||||||||||||||||| | ||||| |||||| |||||||    
T  32191916 tttcgatctaaataagtgatttctacatatatcaagtgttttcttttgtattttttcgtgattttgtcgtct 32191845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 11321659 - 11321583
Alignment:
Q  264 atttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||| ||||||||||||||||||| ||| || |||||| |||| |||||||||||||| ||| |||||||||||||||    
T  11321659 attttctttcaatctaaataagtggttttcacatatattaagttttttcttttgtgtaattt-atgatttcgtcgtct 11321583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 28981067 - 28981128
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttctttt 316  Q
    |||||||||  || |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  28981067 tcttttttccctttctttcaatctaaataagtgatttccacatatatcaagtgttttttttt 28981128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 8102624 - 8102695
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||||||| || | | ||||||| ||||||||||||| ||||| ||||||||||||||    
T  8102624 ctttcaatctaaataagtgattttcacaaacatcaagt-ttttcttttgtgttttttcgtgatttcgtcgtct 8102695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 34018459 - 34018536
Alignment:
Q  263 catttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||| |||||||| |||||||||| ||| || ||||||||||| ||||||||||||| ||||  ||||||||||||||    
T  34018459 cattttctttcaatttaaataagtggttttcacatatatcaagttttttcttttgtgt-tttttgtgatttcgtcgtct 34018536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 1933882 - 1933809
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtg-tattttcatgatttcgtcgtctg 342  Q
    |||| |||||||||||| |||| || ||||||||||| |||||||||||| | ||||| |||||||||||||||    
T  1933882 tttcgatctaaataagttattttcacatatatcaagttttttcttttgtgtttttttcgtgatttcgtcgtctg 1933809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 22571358 - 22571442
Alignment:
Q  233 atctagaatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgt 318  Q
    ||||||||||| ||||| | || |||||||| | | ||||  |||||||||||||||||||| ||||||||||| |||||||||||    
T  22571358 atctagaatcaaccatctgcat-cttttttcctcttcttttgatctaaataagtgatttccacatatatcaagttttttcttttgt 22571442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 26588689 - 26588602
Alignment:
Q  232 gatctagaatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    |||||| |||||||||||   ||| ||||| |||||| ||| |||||||||||||| |||||| ||||||||||| |||| ||||||||    
T  26588689 gatctataatcacccatcttcattttttttccatttctttt-aatctaaataagtggtttccacatatatcaagtttttttttttgtgt 26588602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 7976355 - 7976293
Alignment:
Q  280 aataagtgatttccatatatatcaagtgttttcttttgtg-tattttcatgatttcgtcgtctg 342  Q
    ||||||||||||||| |||||| ||||||||||||||||| | ||||| |||||||||||||||    
T  7976355 aataagtgatttccacatatat-aagtgttttcttttgtgtttttttcgtgatttcgtcgtctg 7976293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 3913794 - 3913703
Alignment:
Q  235 ctagaatcacccatccgtattcttttttc--atttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||||||||| |||| || ||||||||  |||  ||||||||||||||||||| ||| || || |||||||| ||||||||||||| ||||    
T  3913794 ctagaatcacccctccgcat-cttttttcccattctctttcaatctaaataagtggttttcacatctatcaagttttttcttttgtgtttttt 3913703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 33053353 - 33053282
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  33053353 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 33053282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 1523310 - 1523377
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||    ||| ||||| ||||||||||||||    
T  1523310 ctttcaatctaaataagtgatttccacatacatcaagt-ttttct----tgttttttcgtgatttcgtcgtct 1523377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 68186 - 68115
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||| |||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  68186 cttttaatctaaataagtggttttcacatctatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 68115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 127583 - 127646
Alignment:
Q  277 ctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||| ||| || ||||||||||| ||| ||||||||| ||||  ||||||||||||||    
T  127583 ctaaataagtggttttcacatatatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 127646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 545928 - 545999
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||||||  |||| || ||| ||||||| |||||||| |||| ||||| ||||||| ||||||    
T  545928 ctttcaatctaaataagcaattttcacatacatcaagt-ttttctttcgtgttttttcgtgatttcatcgtct 545999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 12170400 - 12170471
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| |||  |||||||| ||||  ||||||||||||||    
T  12170400 ctttcaatctaaataagtggttttcacatctatcaagtttttcgttttgtgt-tttttgtgatttcgtcgtct 12170471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 14801074 - 14801158
Alignment:
Q  232 gatctagaatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttctttt 316  Q
    ||||||||||||||| || ||||  ||||| |  || |||||||||||||||||| |||| || ||| ||||||| |||| ||||    
T  14801074 gatctagaatcacccctctgtatattttttcccctttctttcaatctaaataagtaattttcacatacatcaagttttttttttt 14801158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 9713831 - 9713905
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttc-ttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| | |||||||||||||    
T  9713831 ctttcaatctaaataagtgatttccacatatatcaagttttttctttttgtgttttttctttatttcgtcgtctg 9713905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 47158139 - 47158207
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  47158139 ttttttcactttctttcaatttaaataagtgatttccacatatatcaagttttttcttttgtgtttttt 47158207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 13634039 - 13634110
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||||||||||||| ||||  ||||||||||||||    
T  13634039 ctttcaatctaaataagtggttttcacatctatcaagttttttcttttgtgt-tttttgtgatttcgtcgtct 13634110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 22300768 - 22300844
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgt-gtattttcatgatttcgtcgtctgtg 344  Q
    |||||||| |||||||||||||| ||  ||||||||||| ||||||||||  | ||||| |||||||||||||||||    
T  22300768 ctttcaatttaaataagtgattttcacgtatatcaagtgctttcttttgtacttttttcgtgatttcgtcgtctgtg 22300844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 26633856 - 26633785
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||||||||||||| ||||  ||||||||||||||    
T  26633856 ctttcaatctaaataagtggttttcacatctatcaagttttttcttttgtgt-tttttgtgatttcgtcgtct 26633785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 9643304 - 9643355
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    ||||| ||||||||||||||||| || |||||||| ||||||||||||||||    
T  9643304 ctttcgatctaaataagtgattttcacatatatcatgtgttttcttttgtgt 9643355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 42032691 - 42032640
Alignment:
Q  288 atttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgt 339  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||    
T  42032691 atttccatatatatcaagtcttttcttttgtgttttttcgtgatttcttcgt 42032640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 2520703 - 2520772
Alignment:
Q  271 ttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||| ||| || || |||||||| ||||||||||||| ||||  ||||||||||||||    
T  2520703 ttcaatctaaataagtggttttcacatctatcaagttttttcttttgtgt-tttttgtgatttcgtcgtct 2520772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 28857272 - 28857334
Alignment:
Q  239 aatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatat 301  Q
    ||||||||||| |||| ||||||   ||||||||||||| |||||||||||||||| ||||||    
T  28857272 aatcacccatctgtatcctttttctctttcctttcaatccaaataagtgatttccacatatat 28857334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 51888396 - 51888346
Alignment:
Q  275 atctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||| ||||    
T  51888396 atctaaacaagtgattttcacatatatcaagtgttttcttttgtgtttttt 51888346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 4937757 - 4937802
Alignment:
Q  271 ttcaatctaaataagtgatttccatatatatcaagtgttttctttt 316  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  4937757 ttcaatctaaataagtgattttcatatatattaagttttttctttt 4937802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 22039000 - 22038935
Alignment:
Q  255 tcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    |||||||||  || ||||| ||||||||||||||||| || || |||||||| |||||||||||||    
T  22039000 tcttttttccctttctttctatctaaataagtgattttcacatctatcaagttttttcttttgtgt 22038935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 52944198 - 52944304
Alignment:
Q  232 gatctagaatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgat 331  Q
    |||||| ||||| || || ||||  ||||| | ||| ||||||||||||||||||||||| || ||||    ||||||||||||||||  ||||| ||||    
T  52944198 gatctaaaatcatccctctgtatcatttttcccttttctttcaatctaaataagtgattttcacatat----agtgttttcttttgtgctttttcgtgat 52944293  T
Q  332 ttcgtcgtctg 342  Q
    ||||| |||||    
T  52944294 ttcgtagtctg 52944304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 5119263 - 5119334
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || ||||||||||| ||| ||||||||| |||   ||||||||||||||    
T  5119263 ctttcaatctaaataagtggttttcacatatatcaagtttttccttttgtgt-tttgtgtgatttcgtcgtct 5119334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 21686426 - 21686355
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  21686426 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 21686355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 9634598 - 9634645
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttctttt 316  Q
    ||||| ||||||||||||||||| || |||||||| ||||||||||||    
T  9634598 ctttcgatctaaataagtgattttcacatatatcatgtgttttctttt 9634645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 22558649 - 22558598
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgt 320  Q
    ||||||||||||||||||| ||| || || |||||||| |||||||||||||    
T  22558649 ctttcaatctaaataagtggttttcacatctatcaagttttttcttttgtgt 22558598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 29961109 - 29961054
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||||||||||||||||||| || || |||||||| ||| ||||||||| ||||    
T  29961109 tttcaatctaaataagtgattttcacatctatcaagtttttccttttgtgtttttt 29961054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 33920984 - 33921046
Alignment:
Q  278 taaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||||||||||| || ||||||||||| ||||||||||||  ||||  ||||||||||||||    
T  33920984 taaataagtgattttcacatatatcaagttttttcttttgtg-ctttttgtgatttcgtcgtct 33921046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 33332735 - 33332685
Alignment:
Q  294 atatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctgtg 344  Q
    |||||||| |||  ||||||||||||| ||||| |||||||||||||||||    
T  33332735 atatatataaagctttttcttttgtgttttttcgtgatttcgtcgtctgtg 33332685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 47320581 - 47320531
Alignment:
Q  275 atctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||| || | |||||||| |||||||||||||| ||||    
T  47320581 atctaaataagtgattttcacaaatatcaagcgttttcttttgtgtttttt 47320531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 31359950 - 31359893
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttctt 314  Q
    ||||| ||||| |||||||||||||||| | ||||||| || |||||||| |||||||    
T  31359950 tttttccattttctttcaatctaaataaattatttccacatttatcaagttttttctt 31359893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 36161603 - 36161705
Alignment:
Q  235 ctagaatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttc 334  Q
    ||||||||||||||| | ||| ||||  |||||| ||||||||||||||||||||||  | |||||||||   |||| |||||||| ||||  |||||||    
T  36161603 ctagaatcacccatctgcatt-ttttcccatttc-tttcaatctaaataagtgatttttacatatatcaa---tttttttttgtgtttttttgtgatttc 36161697  T
Q  335 gtcgtctg 342  Q
     |||||||    
T  36161698 ttcgtctg 36161705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 37188739 - 37188694
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttt 315  Q
    |||||||||||||||||||||| || ||||||| ||| ||||||||    
T  37188739 tttcaatctaaataagtgattttcacatatatctagttttttcttt 37188694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 38166430 - 38166373
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttctt 314  Q
    |||||||  |||||||| ||||||| ||||||||| || |||||||||||||| ||||    
T  38166430 ttttttccattcctttcgatctaaacaagtgattttcacatatatcaagtgttgtctt 38166373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 52978749 - 52978794
Alignment:
Q  270 tttcaatctaaataagtgatttccatatatatcaagtgttttcttt 315  Q
    |||||||||||||||||||||| || ||||||||||| ||| ||||    
T  52978749 tttcaatctaaataagtgattttcacatatatcaagtttttccttt 52978794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 4142939 - 4142869
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  4142939 ctttcaatctaaataagtg-ttttcacatctatcaagtttttccttttgtgt-tttttgtgatttcgtcgtct 4142869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 19853693 - 19853626
Alignment:
Q  273 caatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||| ||| || || |||||||| ||||||||| ||| ||||  ||||||||||||||    
T  19853693 caatctaaataagtggttttcacatctatcaagttttttcttttttgt-tttttgtgatttcgtcgtct 19853626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 22611107 - 22611178
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| | | ||||||||| ||||  ||||||||||||||    
T  22611107 ctttcaatctaaataagtggttttcacatctatcaagtttatccttttgtgt-tttttgtgatttcgtcgtct 22611178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 33332788 - 33332756
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatat 301  Q
    |||| ||||||||||||||||||||||||||||    
T  33332788 cttttaatctaaataagtgatttccatatatat 33332756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 35348229 - 35348284
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| || | ||||||||| ||||||||||||| ||||    
T  35348229 ctttcaatctaaataagtggttttcacaaatatcaagt-ttttcttttgtgtttttt 35348284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 36204601 - 36204525
Alignment:
Q  235 ctagaatcacccatccgtattcttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgtttt 311  Q
    |||||||||||| || | ||| | ||| | ||| ||||| || ||||||||||||||||| ||| ||||||||||||    
T  36204601 ctagaatcacccctctgcattttgtttcctttttctttcgatttaaataagtgatttccacatagatcaagtgtttt 36204525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 50690 - 50761
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||| ||||||||||||||    
T  50690 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgt-ttttcgtgatttcgtcgtct 50761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 32933 - 32861
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||||||||||||||| ||| || || |||||||| ||| ||||||||| ||||  ||||||||||||||    
T  32933 ctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgtttttttgtgatttcgtcgtct 32861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 10238 - 10156
Alignment:
Q  257 ttttttcatttcctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    ||||||| ||| ||||| ||||||||||||| ||| || ||||||||||| ||| ||||||||  ||||  ||||||||||||||    
T  10238 ttttttcgttttctttccatctaaataagtggttttcacatatatcaagtttttccttttgtg--tttttgtgatttcgtcgtct 10156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 37950 - 38006
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| || |||| |||||| ||| ||||||||| ||||    
T  37950 ctttcaatctaaataagtggttttcacatatgtcaagtttttccttttgtgtttttt 38006  T

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Target: scaffold0445 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 1247 - 1319
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtct 341  Q
    |||||| |||||||||||| ||| || ||||||||||| || |||||||||| ||||  ||||||| ||||||    
T  1247 ctttcactctaaataagtggttttcacatatatcaagttttctcttttgtgtttttttgtgatttcttcgtct 1319  T

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Target: scaffold0262 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 2003 - 1932
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattttcatgatttcgtcgtctg 342  Q
    |||||||| |||||||||| ||| || ||||||||||| ||| ||||||||  ||||  |||||||||||||||    
T  2003 ctttcaatttaaataagtggtttgcacatatatcaagtttttccttttgtg--tttttgtgatttcgtcgtctg 1932  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 93003 - 93079
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtattt---tcatgatttcgtcgtctg 342  Q
    ||||||||||||||||||||||| |   |||||||||| |||||||| || | |||   ||||||||||||||||||    
T  93003 ctttcaatctaaataagtgatttacgcttatatcaagttttttctttcgttttttttcctcatgatttcgtcgtctg 93079  T

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Target: scaffold0603 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 7619 - 7675
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    |||||||| |||||||||| ||| || ||||||||||| ||| ||||||||| ||||    
T  7619 ctttcaatttaaataagtggttttcacatatatcaagtttttccttttgtgtttttt 7675  T

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Target: scaffold0127 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 15395 - 15451
Alignment:
Q  269 ctttcaatctaaataagtgatttccatatatatcaagtgttttcttttgtgtatttt 325  Q
    ||||||||||||||||||| ||| ||||| | |||||| ||| ||||||||| ||||    
T  15395 ctttcaatctaaataagtggttttcatatctttcaagtttttccttttgtgtttttt 15451  T

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