View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20055_low_9 (Length: 326)

Name: NF20055_low_9
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20055_low_9
NF20055_low_9
[»] chr1 (4 HSPs)
chr1 (147-311)||(35911315-35911497)
chr1 (147-311)||(37396284-37396466)
chr1 (147-311)||(34934175-34934357)
chr1 (147-311)||(35721541-35721723)
[»] scaffold0517 (1 HSPs)
scaffold0517 (147-311)||(10748-10930)
[»] chr7 (1 HSPs)
chr7 (147-311)||(32197333-32197515)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 35911497 - 35911315
Alignment:
Q  147 ataaagtcatttgtttcaaatcgaaattccagagatcggcatgtcaaaatccagaccgaaattcaaccaaatctaaatcgaagttcatc----------- 235  Q
    ||||| |||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||||||               
T  35911497 ataaactcatctgtttcaaatcgaaattccagagaacggcgtgtcaaaatccataccgaaattcatccaaatctaaatcgaagttcatccaaaccttcat 35911398  T
Q  236 -------caaatccaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgggggttaatacatgccgttgttct 311  Q
           |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  35911397 ccaaatccaaatcgaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgtgggtcaatacatgccgttgttct 35911315  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 37396466 - 37396284
Alignment:
Q  147 ataaagtcatttgtttcaaatcgaaattccagagatcggcatgtcaaaatccagaccgaaattcaaccaaatctaaatcgaagttcatc----------- 235  Q
    ||||| |||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||||               
T  37396466 ataaactcatctgtttcaaatcgaaattccagggaacggcgtgtcaaaatccagaccgaaattcatccaaatctaaatcgaagttcatccaaaccttcat 37396367  T
Q  236 -------caaatccaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgggggttaatacatgccgttgttct 311  Q
           |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  37396366 ccaaatccaaatcgaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgtgggtctatacatgccgttgttct 37396284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 34934357 - 34934175
Alignment:
Q  147 ataaagtcatttgtttcaaatcgaaattccagagatcggcatgtcaaaatccagaccgaaattcaaccaaatctaaatcgaagttcatccaa------at 240  Q
    ||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||      ||    
T  34934357 ataaactcatctgtttcaaatcgaaattccagagaacggcgtgtcaaaatccagaccgaaattcatccaaatctaaatcgaagttcatccaaaccttcat 34934258  T
Q  241 cc------------aaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgggggttaatacatgccgttgttct 311  Q
    ||            ||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||    
T  34934257 ccaaatccaaattgaaattcatcttgcttgcaatgattaaaatgaactcagatctgttgtgggtcaatacatgctgttgttct 34934175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 311
Target Start/End: Original strand, 35721541 - 35721723
Alignment:
Q  147 ataaagtcatttgtttcaaatcgaaattccagagatcggcatgtcaaaatccagaccgaaattcaaccaaatctaaatcgaagttc-------------- 232  Q
    ||||| |||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||||| | ||||||||||||||||||                  
T  35721541 ataaactcatctgtttcaaatcgaaattccagagaacggcgtgtcaaaattcagaccgaaattcatcgaaatctaaatcgaagttcatccaaaccttcat 35721640  T
Q  233 ----atccaaatccaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgggggttaatacatgccgttgttct 311  Q
        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  35721641 ccaaatccaaatcgaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgtgggtcaatacatgtcgttgttct 35721723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 147 - 311
Target Start/End: Original strand, 10748 - 10930
Alignment:
Q  147 ataaagtcatttgtttcaaatcgaaattccagagatcggcatgtcaaaatccagaccgaaattcaaccaaatctaaatcgaagttc-------------- 232  Q
    ||||| |||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||                  
T  10748 ataaactcatctgtttcaaatcgaaattccagggaacggcgtgtcaaaatccagaccgaaattcatccaaatctaaatcgaagttcatccaaaccttcat 10847  T
Q  233 ----atccaaatccaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgggggttaatacatgccgttgttct 311  Q
        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  10848 ccaaatccaaatcgaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgtgggtctatacatgccgttgttct 10930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 32197515 - 32197333
Alignment:
Q  147 ataaagtcatttgtttcaaatcgaaattccagagatcggcatgtcaaaatccagaccgaaattcaaccaaatctaaatcgaagttcatc----------- 235  Q
    ||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||||||||               
T  32197515 ataaactcatctgtttcaaatcgaaattccagagaacggcgtgtcaaaatccagaccgaaattcatctaaatctaaatcgaagttcatccaaaccttcat 32197416  T
Q  236 -------caaatccaaattcatcttgcttgcaatgattaaaatgaactcagatctgtcgggggttaatacatgccgttgttct 311  Q
           |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||    
T  32197415 acaaatccaaatcgaaattcatcttgcttgcaatgattaaaatgaactcagatttgtcgtgggtcaatacatgtcgttgttct 32197333  T

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