View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20056_high_15 (Length: 337)
Name: NF20056_high_15
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_high_15 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 16718989 - 16718680
Alignment:
| Q |
13 |
aaaataccattagatttaattaaaggttaagattttttgaaaataaaaattgagaactatttggattttatataggatcgtgtccctttcagtttttctt |
112 |
Q |
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|||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16718989 |
aaaatatcgttagatttaattaaaggttaagactttttgaaaataaaaattgagaactatttggattttacataggatcgtgtccctttcagtttttctt |
16718890 |
T |
|
| Q |
113 |
ccctgtccgccaaactacacatctgatttcttttatttttaataagaatttatgctttgaattacaatctgttgcaagttaccactcctctctacaaaat |
212 |
Q |
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||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16718889 |
ccctgtctgtcaaactacacatctggtttctcttatttttaataagaatttatgctttgagttacaatctgttgcaagttaccactcctctctacaaaat |
16718790 |
T |
|
| Q |
213 |
taattcatcacctccatattttcattcaatgcattaatgatttgataagttaaaaaagtaatgaacttttcatcttaaaggaatgaaaaactccttctca |
312 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16718789 |
taattcatcacctccatgttttcattcaatgcattaatgatttgataagttaaaaaagtaatgaacttttcatcctaaaggaatgaaaaactccttctca |
16718690 |
T |
|
| Q |
313 |
gcaacaattt |
322 |
Q |
| |
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|||||||||| |
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|
| T |
16718689 |
gcaacaattt |
16718680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 24565626 - 24565934
Alignment:
| Q |
13 |
aaaataccattagatttaattaaaggttaagattttttgaaaataaaaattgagaactatttggatttt-atataggatcgtgtccctttcagtttttct |
111 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |||||||||||| | | | ||||||||||||||||| |||||| |
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| T |
24565626 |
aaaataccattagatttaattaatggtttagatttttttaaaataaaaaatgagaagtatttggatttttacacacgatcgtgtccctttcaggttttct |
24565725 |
T |
|
| Q |
112 |
tccctgtccgccaaactacacatctgatttcttttatttttaat-aagaatttatgctttgaattacaatctgttgcaagttaccactcctctctacaaa |
210 |
Q |
| |
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||||||| | |||||||||| |||| ||||||| |||||| || ||||||||||||||||| ||||||| ||||||||||||| || |||||||||||| |
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| T |
24565726 |
tccctgt--gtcaaactacacgtctggtttctttaattttttattaagaatttatgctttgagttacaat-tgttgcaagttacaacccctctctacaaa |
24565822 |
T |
|
| Q |
211 |
attaattcatcacctccatattttcattcaatgcattaatgatttgataagttaaaaaagtaatgaacttttcatcttaaaggaatgaaaaactccttct |
310 |
Q |
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||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||| |
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| T |
24565823 |
attaattcatcacctccatgttttcattcaacgtattaatgatttgataagttaaaaaaataatgaacttttcatcctaaaggaatgaaacgctcattct |
24565922 |
T |
|
| Q |
311 |
cagcaacaattt |
322 |
Q |
| |
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| |||||||||| |
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|
| T |
24565923 |
ctgcaacaattt |
24565934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 24606662 - 24606970
Alignment:
| Q |
13 |
aaaataccattagatttaattaaaggttaagattttttgaaaataaaaattgagaactatttggatttt-atataggatcgtgtccctttcagtttttct |
111 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |||||||||||| | | | ||||||||||||||||| |||||| |
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|
| T |
24606662 |
aaaataccattagatttaattaatggtttagatttttttaaaataaaaaatgagaagtatttggatttttacacacgatcgtgtccctttcaggttttct |
24606761 |
T |
|
| Q |
112 |
tccctgtccgccaaactacacatctgatttcttttatttttaat-aagaatttatgctttgaattacaatctgttgcaagttaccactcctctctacaaa |
210 |
Q |
| |
|
||||||| | |||||||||| |||| ||||||| |||||| || ||||||||||||||||| ||||||| ||||||||||||| || |||||||||||| |
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|
| T |
24606762 |
tccctgt--gtcaaactacacgtctggtttctttaattttttattaagaatttatgctttgagttacaat-tgttgcaagttacaacccctctctacaaa |
24606858 |
T |
|
| Q |
211 |
attaattcatcacctccatattttcattcaatgcattaatgatttgataagttaaaaaagtaatgaacttttcatcttaaaggaatgaaaaactccttct |
310 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||| |
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|
| T |
24606859 |
attaattcatcacctccatgttttcattcaacgtattaatgatttgataagttaaaaaaataatgaacttttcatcctaaaggaatgaaacgctcattct |
24606958 |
T |
|
| Q |
311 |
cagcaacaattt |
322 |
Q |
| |
|
| |||||||||| |
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|
| T |
24606959 |
ctgcaacaattt |
24606970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 36611489 - 36611421
Alignment:
| Q |
13 |
aaaataccattagatttaattaaaggttaagattttttgaaaataaaaattgagaactatttggatttt |
81 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |||||||||||| |
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|
| T |
36611489 |
aaaataccattagatttaattaatggtttagatttttttaaaataaaaaatgagaaatatttggatttt |
36611421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 53242714 - 53242775
Alignment:
| Q |
8 |
cgaagaaaataccattagatttaattaaaggttaagattttttgaaaataaaaattgagaac |
69 |
Q |
| |
|
|||||||||||||||| |||| ||| || ||||||||||| |||||||||||| |||||||| |
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|
| T |
53242714 |
cgaagaaaataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaac |
53242775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 18363653 - 18363593
Alignment:
| Q |
8 |
cgaagaaaataccattagatttaattaaaggttaagattttttgaaaataaaaattgagaac |
69 |
Q |
| |
|
|||||||||||||||| |||| ||| || |||| |||||| |||||||| |||||||||||| |
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|
| T |
18363653 |
cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaat-aaaattgagaac |
18363593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 36599275 - 36599335
Alignment:
| Q |
8 |
cgaagaaaataccattagatttaattaaaggttaagattttttgaaaataaaaattgagaac |
69 |
Q |
| |
|
|||||||||||||||| |||| ||| || |||| |||||| |||||||| |||||||||||| |
|
|
| T |
36599275 |
cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaat-aaaattgagaac |
36599335 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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