View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_high_18 (Length: 312)
Name: NF20056_high_18
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 26990320 - 26990605
Alignment:
| Q |
21 |
gctgcgcctaataaccttgtgnnnnnnngcatcgccgagccacatgctaacccaataaaaagcaagacagatatgtgatgctgcacttcctccctatcct |
120 |
Q |
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| T |
26990320 |
gctgcgcctaataaccttgtgaaaaaaagcatcgccgagccacatgctaacccgataaaaagcaagacagatatgtgatgctgcacttcctccctatcct |
26990419 |
T |
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| Q |
121 |
acacagacatattaactaagcaaaggcggtgcaataaatcctaaaagttatgtgtgcataaagtcatggatgtgaatacataacaataatgccaaaaaat |
220 |
Q |
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| T |
26990420 |
acacagacatattaactaagcaaaggcggtgcaataaatcctaaaagttatgtgtgcataaagtcatggatgtgaatacataacaataatgccaaaaaat |
26990519 |
T |
|
| Q |
221 |
ttactggtcttctg-gtgtatacagaatttcattgtaagaatacatgcacctaatcatgcattgctttaaatattggcctatgctt |
305 |
Q |
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| T |
26990520 |
ttactggtcttctgcgtgtatacagaatttcattgtaagaatacatgcacctaatcatgcattgctttaaatattggcctctgctt |
26990605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 49 - 270
Target Start/End: Original strand, 27004888 - 27005111
Alignment:
| Q |
49 |
gcatcgccgagccacatgctaacccaataaaaagcaagacagatatgtgatgctgcacttcctccctatcctacacagacatattaactaagcaaaggcg |
148 |
Q |
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| T |
27004888 |
gcatcgccaagccacatgctaacccaataaaaagcaagacagatatgtgatgctgcacttcctccctatcctacacaaacaaataaactaatcaaaggca |
27004987 |
T |
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| Q |
149 |
gtgcaataaatcctaaaagttatgtgtgcataaagtcatggatgtgaatacataac-aataatgccaaaa-aatttactggtcttctg-gtgtatacaga |
245 |
Q |
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| T |
27004988 |
gtgcaataaatcctaaaagttctgtgcgcataaagtcatggatgtg-atacataacaaataacaccaaaatagtttactggtcttctgtgtgtatacaca |
27005086 |
T |
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| Q |
246 |
atttcattgtaagaatacatgcacc |
270 |
Q |
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||||||| |||||| ||| |||||| |
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| T |
27005087 |
atttcatagtaagagtacgtgcacc |
27005111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 26977303 - 26977142
Alignment:
| Q |
49 |
gcatcgccgagccacatgctaacccaataaaaagcaagacagatatgtgatgctgcacttcctccctatcctacacagacatattaactaagcaaaggcg |
148 |
Q |
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||||| || |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||| || |
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| T |
26977303 |
gcatcaccaagccacatactaatccaatgaaaagcaagacagatatgtgatgctgcacttcctccctatcctacacaaacatatttactcatgaaaagca |
26977204 |
T |
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| Q |
149 |
gtgcaataaatcctaaaagttatgtgtgc--ataaagtcatggatgtgaatacataacaataa |
209 |
Q |
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| | | ||||||||||||||| ||||||| |||||| |||| ||||| |||||||||||||| |
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| T |
26977203 |
gggaagtaaatcctaaaagttctgtgtgcatataaagacatgaatgtg-atacataacaataa |
26977142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 26945367 - 26945448
Alignment:
| Q |
58 |
agccacatgctaacccaataaaaagcaagacagatatgtgatgctgcacttcctccctatcctacacagacatattaactaa |
139 |
Q |
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| T |
26945367 |
agccacaagccaacccaacaaaaagcaagacagatatgtgatgctgcacttcttctgtatcctacacaaacatttgaactaa |
26945448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 26953088 - 26953151
Alignment:
| Q |
58 |
agccacatgctaacccaataaaaagcaagacagatatgtgatgctgcacttcctccctatccta |
121 |
Q |
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|||||||||| |||||||||||||||| || ||| | |||||||||||| ||||| |||||||| |
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| T |
26953088 |
agccacatgccaacccaataaaaagcaggatagacaagtgatgctgcacatcctctctatccta |
26953151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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