View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_high_20 (Length: 257)
Name: NF20056_high_20
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 46398439 - 46398599
Alignment:
| Q |
11 |
agaaaatgagttagggtagacttgtgctttgtacggtgttggtgattgtgatcacaacaatgaagaaggtgaaagttttttgttaacaccgtaaataaaa |
110 |
Q |
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| T |
46398439 |
agaatatgagttagggtagacttgtgctttgtacggtgatggtgat-gtgatcacaacaatgaagaaggtgaaagttttttgttaacaccgtaaataaaa |
46398537 |
T |
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| Q |
111 |
tctgtttccatcatccaattaaaaaataatgctaattattatgacaacaagaaaagttaata |
172 |
Q |
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| T |
46398538 |
tctgtttccatcatccaattaaaaaataatgctaattattatgacaacaagaaaagttaata |
46398599 |
T |
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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 46398882 - 46398969
Alignment:
| Q |
171 |
taagacaaagaaataaaagtgcattaattacacct-aagccgtgcaacattgcacatgttagaaaacttcataaatatatagttattc |
257 |
Q |
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| T |
46398882 |
taagacaaagaaataaaagtgcattaattacaccttaagccgtgcaacattgcacatgttagaaaacttcataaatatataattattc |
46398969 |
T |
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