View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_high_6 (Length: 429)
Name: NF20056_high_6
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 37584186 - 37584599
Alignment:
| Q |
1 |
atagattttgtcaacatagttttgtccgaagaatgaaataccacaaacacaatccagaaccccttgcaatccaggaatctcgtaagcagattattacgcc |
100 |
Q |
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| T |
37584186 |
atagattttgtcaacatagttttgtccgaagaatgaaataccacaaacacaatccagatccccctgcaatccatgaatcttgtaagcagattattacgcc |
37584285 |
T |
|
| Q |
101 |
acatcggtactttaaattacttgattttttagggttgggacaattcaaaaattgttctgttcttgacaacttcttttctttcttaaaaaatatg----ta |
196 |
Q |
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| T |
37584286 |
acatctgtactttaaattacttgattttttagggttgggacaattcaaaaattgttctgttcttgacaacttcttttctttctataaaaatatgtatgta |
37584385 |
T |
|
| Q |
197 |
ctcaaataaaaaccaatgtccaattcactttgatacaaaatcatagcaacaaacaagtgcaaatcctattctattatcatcatccaaaattttcaactac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584386 |
ctcaaataaaaaccaatgtccaattcactttgatacaaaatcatagcaacaaacaagtgcaaatcctattctattatcatcatccaaaattttcaactac |
37584485 |
T |
|
| Q |
297 |
aatcaacaactggattacaaaaataaaattgaagaaactaattcacccaacacaacttataaaggggaaaaactactcaagagaagaaaaaacgccagat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584486 |
aatcaacaactggattacaaaaataaaattgaagaaactaattcacccaacacaacttataaaggggaaaaactactcaagagaagaaaaaacgccagat |
37584585 |
T |
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| Q |
397 |
tcacatgcatgagg |
410 |
Q |
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|||||||||||||| |
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| T |
37584586 |
tcacatgcatgagg |
37584599 |
T |
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