View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_high_7 (Length: 427)
Name: NF20056_high_7
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 50017406 - 50017682
Alignment:
| Q |
17 |
ctaacaatgccttgaatggcaaccacgtactccaatctaaggttattgatagcagaatgtgcaacaggaaattcatctggaagtgttgtaacctgaacaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50017406 |
ctaacaatgccttgaatggcaaccacgtactccaatctaaggttattgatagcagaatgggcaacaggaaattcatctggaagtgttgtaacctgaacaa |
50017505 |
T |
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| Q |
117 |
tgcctgtatggtctctaagattgagaaaagtgagtccaccgtggagtctgtgaagtgcaacccagccacaaagacgaactgttttgccgacatcgttgga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50017506 |
tgcctgtatggtctctaagattgagaaaagtgagtccaccgtggagtctgtgaagtgcaacccagccacaaagacgaaccgttttgccgacatcgttgga |
50017605 |
T |
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| Q |
217 |
agataattcgccgcaatgatgagttcttgaaacccattgaagggattcgttgagtgtttctgtttcagaagaaagtg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50017606 |
agataattcgccgcaatgatgagttcttgaaacccattgaagggattcgttgagtgtttctgtttcagaaggaagtg |
50017682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 18855160 - 18855403
Alignment:
| Q |
17 |
ctaacaatgccttgaatggcaaccacgtactccaatctaaggttattgatagcagaatgtgcaacaggaaattcatctggaagtgttgtaacctgaacaa |
116 |
Q |
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||||||| |||||||||| |||||| ||||| ||| ||||||||| ||||||||||||| || |||||||||| | || ||||||||||||||| || |
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| T |
18855160 |
ctaacaacaccttgaatggtaaccacatactcgcgtcttaggttattgttagcagaatgtgcgactggaaattcatttagatgtgttgtaacctgaataa |
18855259 |
T |
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| Q |
117 |
tgcctgtatggtctctaagattgagaaaagtgagtccaccgtggagtctgtgaagtgcaacccagccacaaagacgaactgttttgccgacatcgttgga |
216 |
Q |
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|||| || |||||||||||| ||||||| | || | |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
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| T |
18855260 |
tgccggtgtggtctctaagaatgagaaaggcgacttcaccgtggcgtctgtgaagtgcaacccaaccacaaagacgaacggttttgccgacatcgttcga |
18855359 |
T |
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| Q |
217 |
agataattcgccgcaatgatgagttcttgaaacccattgaaggg |
260 |
Q |
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||||||||| |||||||| ||||| ||||||| |||||| |||| |
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| T |
18855360 |
agataattcaccgcaatggtgagtccttgaaatccattggaggg |
18855403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 18843689 - 18843942
Alignment:
| Q |
17 |
ctaacaatgccttgaatggcaaccacgtactccaatctaaggttattgatagcagaatgtgcaacaggaaattcatctggaagtgttgtaacctgaacaa |
116 |
Q |
| |
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||||||| ||||||||||||| |||| ||||| ||| ||||| ||| ||||||||||||| || |||||||||||| || |||| ||||||||| || |
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| T |
18843689 |
ctaacaacgccttgaatggcagccacatactcgcgtcttaggtttttgttagcagaatgtgcgactggaaattcatctagacgtgtcttaacctgaataa |
18843788 |
T |
|
| Q |
117 |
tgcctgtatggtctctaagattgagaaaagtgagtccaccgtggagtctgtgaagtgcaacccagccacaaagacgaactgttttgccgacatcgttgga |
216 |
Q |
| |
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|||| || |||||||||||| ||||||| | || ||||||| || |||||||||| || |||| |||||||||||||| ||||| |||||||||||||| |
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| T |
18843789 |
tgccggtctggtctctaagaatgagaaaggcgactccaccgaggcttctgtgaagttcagcccaaccacaaagacgaacggttttaccgacatcgttgga |
18843888 |
T |
|
| Q |
217 |
agataattcgccgcaatgatgagttcttgaaacccattgaagggattcgttgag |
270 |
Q |
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|||||||||||||||||||||||| ||||||| |||||| ||||||| |||||| |
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| T |
18843889 |
agataattcgccgcaatgatgagtccttgaaatccattggagggattggttgag |
18843942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 50017726 - 50017790
Alignment:
| Q |
352 |
ggttctggttgtggaaattaaagttggaatggttttggaaagtctagagagaaagaaaattgatg |
416 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50017726 |
ggttctggttctggaaattaaagttggaatggttttggaaagtctagagagaaagaaaattgatg |
50017790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 44114912 - 44115188
Alignment:
| Q |
17 |
ctaacaatgccttgaatggcaaccacgtactccaatctaaggttattgatagcagaatgtgcaacaggaaattcatctggaagtgttgtaacctgaacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44114912 |
ctaacaatgccttgaatggcaaccacgtactccaatctaaggttattgatagcagaatgtgcaacaggaaattcatctggaagtgttgtaacctgaacaa |
44115011 |
T |
|
| Q |
117 |
tgcctgtatggtctctaagattgagaaaagtgagtccaccgtggagtctgtgaagtgcaacccagccacaaagacgaactgttttgccgacatcgttgga |
216 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44115012 |
tgccggtatggtctctaagattgagaaaagtgagtccaccatggagtctgtgaagtgcaacccagccacaaagacgaactgttttgccgatatcgttgga |
44115111 |
T |
|
| Q |
217 |
agataattcgccgcaatgatgagttcttgaaacccattgaagggattcgttgagtgtttctgtttcagaagaaagtg |
293 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44115112 |
agataattcgccgcaatgatgagttcttgaaacccattgaaggggttcgttgagtgtttctgtttcagaaggaagtg |
44115188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 44115238 - 44115302
Alignment:
| Q |
352 |
ggttctggttgtggaaattaaagttggaatggttttggaaagtctagagagaaagaaaattgatg |
416 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44115238 |
ggttctggttctggaaattaaagttggaatggttttggaaagtctagagagaaagaaaattgatg |
44115302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 51304170 - 51304417
Alignment:
| Q |
17 |
ctaacaatgccttgaatggcaaccacgtactccaatctaaggttattgatagcagaatgtgcaacaggaaattcatctggaagtgttgtaacctgaacaa |
116 |
Q |
| |
|
||||||| |||||||||||||| || ||||| | ||| | |||||||| |||| ||||||| | |||||||||| | ||||||| ||||||||| || |
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| T |
51304170 |
ctaacaacaccttgaatggcaacgacatactcgagtcttacgttattgagagcataatgtgcggctggaaattcatgagtaagtgttttaacctgaataa |
51304269 |
T |
|
| Q |
117 |
tgcctgtatggtctctaagattgagaaaagtgagtccaccgtggagtctgtgaagtgcaacccagccacaaagacgaactgttttgccgacatcgttgga |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||||||||||| || |||| ||||||||||||||| || |||||||||| |||||||| |||||| |
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| T |
51304270 |
tgccggtatggtctctaagattgagaaaggcgagtccaccgtgggatcggtgatatgcaacccagccacagaggcgaactgtttcgccgacattgttgga |
51304369 |
T |
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| Q |
217 |
agataattcgccgcaatgatgagttcttgaaacccattgaagggattc |
264 |
Q |
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|||||||||||||||| |||||| ||||||| ||||| ||||||||| |
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| T |
51304370 |
agataattcgccgcaaaaatgagtccttgaaatccattcaagggattc |
51304417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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