View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_1 (Length: 795)
Name: NF20056_low_1
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 8 - 779
Target Start/End: Complemental strand, 42449147 - 42448370
Alignment:
| Q |
8 |
caccagagagccaataaaactcgcaatgattactgtattcatatgtcctaggaagcaatttgtgcaggacaagaaatgtatcatcataataaggatgatt |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42449147 |
caccagagagccaataaaagtcgcaatgattactgtattcatatgtcctaggaagcaatttgtgcaggacaagaaatgtatcatcataataaggatgatt |
42449048 |
T |
|
| Q |
108 |
accatggatgatattgtcggtgtacattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgatttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42449047 |
accatggatgatattgtcggtgtacattttcataaaacgaggatttccaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgatttt |
42448948 |
T |
|
| Q |
208 |
aagggaagttttgacaaaatgaagagcactatatcatgaggtaaatagttgcaaacctttccgttagtgacagcaactaacactgatttttccatctccg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42448947 |
aagggaagttttgacaaaatgaagagcactatatcatgaggtaaatagttgcaaaccttttcgttagtgacagcaactaacactgatttttccatctccg |
42448848 |
T |
|
| Q |
308 |
agtccgatggtggattcctgcaactagaggggaatgagattgagagaaatatgaaatgcaaatgtgaaaatatattgtattgagcaaagtaatctgaaac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42448847 |
agtccgatggtggattcctgcaactagaggggaatgagattgagagaaatatgaaatgcaaatgtgaaaatatattgtattgagcaaagtaatctgaaac |
42448748 |
T |
|
| Q |
408 |
cctgatgacaacgggttttttcaactgagattcgtttcggaagtcatttttctagcgttggtccccacgtatcccttccctcgtaaatttctagcggcag |
507 |
Q |
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||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42448747 |
cctaatgacaacgggttttttcaactgatatccgtttcggaagtcatttttctagcgttggtccccacgtatcccttccctcgtaaatttctagcggcag |
42448648 |
T |
|
| Q |
508 |
tataggcaaagctataacagacaacataacttagagg----nnnnnnnnnnnnnnnntaaacgagcttatccataagaatttttcaacagagaaataaaa |
603 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42448647 |
tataggcaaagctataacagacaatataacttagaggaaaaaagaaaagaaaaaaaataaacgagcttatccataagaatttttcaacagagaaataaaa |
42448548 |
T |
|
| Q |
604 |
taaaaggtttcaatacaattttgtctctctattttccatctaaaattaatttttacactatgcttgtttggtaaaatttatgaatttttacactatggtt |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42448547 |
taaaaggtttcaatacaattttgtctctctattttccatctaaaattaatttttacactatgcttgtttggtaaaatttatgaatttttacactatggtt |
42448448 |
T |
|
| Q |
704 |
ggt--nnnnnnnnttgaaggaaagaatgtgatctgatcggatcaactgaactacatccggtgcggtgagcttagttgt |
779 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42448447 |
ggtacaaaaaaatttgaaggaaagaatatgatctgatcggatcaactgaactacgtccggtgcggtgagcttagttgt |
42448370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 20425810 - 20425740
Alignment:
| Q |
153 |
ttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgaca |
223 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| ||||| ||||| |||||||| ||||||||||||| |
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| T |
20425810 |
ttcaaataaaagagaccatgcattgcatacgcattcaaatcgtttcaaagattttaaaggaagttttgaca |
20425740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 42261565 - 42261433
Alignment:
| Q |
151 |
ttttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaatgaagagcactatatcatgaggta |
250 |
Q |
| |
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||||| ||||||||||||||| ||||||||| ||| ||| | ||||||||||||||| || ||||||||||||||||||||||| | ||||||||||| |
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| T |
42261565 |
ttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatgaggta |
42261466 |
T |
|
| Q |
251 |
aatagttgcaaacctttccgttagtgacagcaa |
283 |
Q |
| |
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||| | | ||||||||| ||| | ||||||||| |
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| T |
42261465 |
aattgatccaaaccttttcgtcaatgacagcaa |
42261433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 51869222 - 51869132
Alignment:
| Q |
136 |
ttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaa |
226 |
Q |
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||||| ||| |||| | ||||||||||||||||||| ||||| || | ||| ||||| ||||| |||||||| |||||||||||||||| |
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| T |
51869222 |
ttcatgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcgtttcaaagattttaacggaagttttgacaaaa |
51869132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 29136493 - 29136437
Alignment:
| Q |
131 |
acattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcatt |
187 |
Q |
| |
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|||| ||||| ||||||| |||||||||||||||||||||| |||||| ||||||| |
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| T |
29136493 |
acatgttcatgaaacgagtattttcaaataagagagaccatgatttgcaaacgcatt |
29136437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 29353315 - 29353390
Alignment:
| Q |
151 |
ttttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaa |
226 |
Q |
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||||||||||||||||||||| ||| ||||||| ||| | |||||| |||||||| |||||||||||||||| |
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| T |
29353315 |
ttttcaaataagagagaccatgttttatttacgcatccaaaacgcttcaaagattttaaaggaagttttgacaaaa |
29353390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 31135842 - 31135920
Alignment:
| Q |
131 |
acattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaa |
209 |
Q |
| |
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|||| ||||||||| ||| ||||||||||| ||||||||| |||||||||| ||| ||||| |||||| ||||||| |
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| T |
31135842 |
acatgttcataaaaatagggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaa |
31135920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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