View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20056_low_11 (Length: 411)

Name: NF20056_low_11
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20056_low_11
NF20056_low_11
[»] scaffold0070 (2 HSPs)
scaffold0070 (224-391)||(19348-19515)
scaffold0070 (259-355)||(38770-38866)
[»] chr8 (5 HSPs)
chr8 (225-396)||(25692409-25692580)
chr8 (287-397)||(25384122-25384232)
chr8 (314-397)||(25602609-25602692)
chr8 (222-265)||(25389413-25389456)
chr8 (222-262)||(25384082-25384122)
[»] scaffold0955 (2 HSPs)
scaffold0955 (259-355)||(3574-3670)
scaffold0955 (222-268)||(3418-3464)
[»] chr7 (1 HSPs)
chr7 (44-162)||(5824333-5824451)
[»] chr5 (1 HSPs)
chr5 (311-383)||(16499164-16499236)


Alignment Details
Target: scaffold0070 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 224 - 391
Target Start/End: Complemental strand, 19515 - 19348
Alignment:
Q  224 gttatttgattaactattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttga 323  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  19515 gttatttgattaactattagaaaaattagatttttaaaaaatgaagtatgtctatatttttccatgtttgtacaaacagaacataagctgaacttgttga 19416  T
Q  324 ggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatcatcaaatta 391  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19415 ggaaattgcgatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatcatcaaatta 19348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 38866 - 38770
Alignment:
Q  259 aaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttga 355  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38866 aaaaaaagaagtatgtttatatttttccatgtttgtacaaacagaacagaagctgaacttgttgaggaaattgcgatgggtgtgctgcaaaagttga 38770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 225 - 396
Target Start/End: Original strand, 25692409 - 25692580
Alignment:
Q  225 ttatttgattaactattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgag 324  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  25692409 ttatttgattagctattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatatttgtacaaacagaacagaagctgaacttgttgag 25692508  T
Q  325 gaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatcatcaaattattaaa 396  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  25692509 gaaattgcaatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatcatcaaattactaaa 25692580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 287 - 397
Target Start/End: Original strand, 25384122 - 25384232
Alignment:
Q  287 atgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatcatca 386  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||| ||||  ||||||| ||    
T  25384122 atgtttgtataaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcacca 25384221  T
Q  387 aattattaaat 397  Q
    ||||| |||||    
T  25384222 aattactaaat 25384232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 314 - 397
Target Start/End: Original strand, 25602609 - 25602692
Alignment:
Q  314 aacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatcatcaaattattaaat 397  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||| ||||||| |||||    
T  25602609 aacttgttgaggaaattgcaatggatgtgctgcaaaatttgaatcgtctttatgttggtgacttggatcaacaaattactaaat 25602692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 25389413 - 25389456
Alignment:
Q  222 atgttatttgattaactattagaaaaataagatttttaaaaaat 265  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  25389413 atgttatttgatttactattagaaaaataagatttttaaaaaat 25389456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 25384082 - 25384122
Alignment:
Q  222 atgttatttgattaactattagaaaaataagatttttaaaa 262  Q
    |||||||||||||||||||| ||||  ||||||||||||||    
T  25384082 atgttatttgattaactattggaaatttaagatttttaaaa 25384122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 3574 - 3670
Alignment:
Q  259 aaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttga 355  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3574 aaaaaaagaagtatgtttatatttttccatgtttgtacaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttga 3670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 3418 - 3464
Alignment:
Q  222 atgttatttgattaactattagaaaaataagatttttaaaaaatgaa 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3418 atgttatttgattaactattagaaaaataagatttttaaaaaatgaa 3464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 5824451 - 5824333
Alignment:
Q  44 gagaggcagtaaccacatcttagatgtcttnnnnnnntaaattttctatcactcacccaaattctaggattgcatatatataatcacccaattacatgtt 143  Q
    ||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5824451 gagaggcagtaaccacatcttggatgtcttagaaaaataaattttctatcactcacccaaattctaggattgtatatatataatcacccaattacatgtt 5824352  T
Q  144 aggttcatcaactactgtc 162  Q
     ||||||| ||||||||||    
T  5824351 tggttcataaactactgtc 5824333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 16499236 - 16499164
Alignment:
Q  311 ctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatca 383  Q
    |||||||| ||||| ||||||||| ||||||  || |||| || ||| | ||||||||||||||||| |||||    
T  16499236 ctgaacttcttgagaaaattgcgaaggatgtattggaaaaattaaatcgagtttatgttggtgacttagatca 16499164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University