View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_13 (Length: 397)
Name: NF20056_low_13
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 35043647 - 35044021
Alignment:
| Q |
8 |
ggtagataattctatcatcttttatgcatgcttcaattatttttcaaaattattgggctggcccctgcatatgtgttttctctgccggcagatagtgctc |
107 |
Q |
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| T |
35043647 |
ggtatataattctatcatcttttgtgcatgcttcaattatttttcaaaattattgggctggcccctgcatatgtgttttctctgctggcagatagtgctc |
35043746 |
T |
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| Q |
108 |
ctccatcccttttatatacgttcaaatctacacctgcagagaaaccaacatcacacattacactacaccgctagctatagtactccatttctaacaccaa |
207 |
Q |
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| T |
35043747 |
ctccatcccttttatatacgttcaaatctacacctgcagagaaaccaacatcacacattacactacaccgctagctatagtactccatttctaacaccaa |
35043846 |
T |
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| Q |
208 |
gcaaatgatgaataatttgctttcaccttcgacccttcaaccatttactatttgcaccactttgttgtttcttttcgttctcttttggctactgagaagc |
307 |
Q |
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| T |
35043847 |
gcaaatgatgaataatttgctttcaccctcgacccttcaaccatttactatttgcaccactttgttgtttcttttcgttctcttttggctactgagaagc |
35043946 |
T |
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| Q |
308 |
cgccgcattaatactagtgtagcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggt |
397 |
Q |
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| T |
35043947 |
cgccgcattaatactagtgtagct---------------ccagaagccggtggagcttggcctttgatcggccacctccacctcttaggt |
35044021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 397
Target Start/End: Original strand, 35035791 - 35035860
Alignment:
| Q |
328 |
agcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggt |
397 |
Q |
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| T |
35035791 |
agcttcaatgacaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggt |
35035860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 35029678 - 35029752
Alignment:
| Q |
329 |
gcttcaaagacaccaccacc------agaagccagtggagcttggcctttgatcggccacctccacctcttaggt |
397 |
Q |
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| T |
35029678 |
gcttcaaagacaccaccaccgccgccagaagccagcggagcatggccgttaattggccacctccacctcttaggt |
35029752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 35019594 - 35019661
Alignment:
| Q |
327 |
tagcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggt |
397 |
Q |
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| T |
35019594 |
tagcttcaaagacaccaccg---gaagccggcggatcatggccgttaatcggccacctccacctcttaggt |
35019661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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