View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20056_low_15 (Length: 380)

Name: NF20056_low_15
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20056_low_15
NF20056_low_15
[»] chr5 (20 HSPs)
chr5 (1-183)||(36362984-36363166)
chr5 (3-129)||(7544142-7544268)
chr5 (250-312)||(36362854-36362916)
chr5 (1-129)||(2550462-2550590)
chr5 (1-129)||(13634717-13634845)
chr5 (22-129)||(22022853-22022963)
chr5 (3-89)||(9856926-9857012)
chr5 (13-129)||(16938485-16938601)
chr5 (13-129)||(26414899-26415015)
chr5 (1-129)||(40815303-40815430)
chr5 (1-139)||(10476022-10476162)
chr5 (13-129)||(16501912-16502030)
chr5 (13-129)||(4373688-4373804)
chr5 (1-69)||(8502945-8503013)
chr5 (66-129)||(14245094-14245157)
chr5 (96-138)||(20147075-20147117)
chr5 (96-129)||(13634916-13634949)
chr5 (96-129)||(14245251-14245284)
chr5 (97-129)||(11436945-11436977)
chr5 (93-129)||(36363234-36363270)
[»] chr1 (22 HSPs)
chr1 (2-129)||(38510005-38510132)
chr1 (3-129)||(30010338-30010464)
chr1 (3-128)||(2859044-2859169)
chr1 (23-139)||(12234006-12234122)
chr1 (1-129)||(51597674-51597802)
chr1 (1-129)||(32951428-32951556)
chr1 (1-129)||(35349572-35349700)
chr1 (4-60)||(26940956-26941012)
chr1 (13-129)||(49946710-49946826)
chr1 (1-76)||(50744391-50744466)
chr1 (13-127)||(10391880-10391994)
chr1 (1-63)||(44211015-44211077)
chr1 (1-138)||(41498401-41498538)
chr1 (1-64)||(40095043-40095107)
chr1 (3-55)||(42230618-42230670)
chr1 (96-143)||(20607422-20607469)
chr1 (96-138)||(35927811-35927853)
chr1 (1-55)||(36285684-36285738)
chr1 (4-89)||(8529845-8529930)
chr1 (96-129)||(26324020-26324053)
chr1 (93-129)||(1085692-1085728)
chr1 (3-55)||(7444575-7444627)
[»] chr7 (25 HSPs)
chr7 (1-129)||(1051608-1051736)
chr7 (13-144)||(39855987-39856118)
chr7 (1-138)||(13771056-13771193)
chr7 (1-129)||(25887198-25887326)
chr7 (13-129)||(33655230-33655346)
chr7 (1-129)||(41008188-41008315)
chr7 (1-129)||(31571578-31571708)
chr7 (1-76)||(40196642-40196717)
chr7 (1-129)||(34228428-34228557)
chr7 (1-129)||(47390861-47390990)
chr7 (1-129)||(24970275-24970403)
chr7 (5-129)||(26365773-26365898)
chr7 (1-76)||(34235117-34235193)
chr7 (21-89)||(41497087-41497155)
chr7 (1-54)||(22163219-22163272)
chr7 (1-54)||(22221927-22221980)
chr7 (3-76)||(38378104-38378177)
chr7 (1-76)||(17852930-17853005)
chr7 (94-129)||(31364247-31364282)
chr7 (1-64)||(37417743-37417806)
chr7 (96-143)||(37925833-37925880)
chr7 (96-129)||(36267758-36267791)
chr7 (96-129)||(42306535-42306568)
chr7 (97-129)||(40282203-40282235)
chr7 (102-138)||(48881760-48881796)
[»] chr2 (20 HSPs)
chr2 (1-129)||(36347651-36347779)
chr2 (1-89)||(23748141-23748229)
chr2 (13-90)||(6721744-6721821)
chr2 (13-129)||(8426993-8427109)
chr2 (13-129)||(15224816-15224932)
chr2 (13-129)||(35736181-35736297)
chr2 (13-129)||(36566973-36567090)
chr2 (1-129)||(9426991-9427119)
chr2 (14-129)||(19566944-19567054)
chr2 (1-62)||(16565850-16565911)
chr2 (1-129)||(2241417-2241544)
chr2 (1-129)||(39732839-39732966)
chr2 (4-64)||(40022441-40022501)
chr2 (1-140)||(31795879-31796013)
chr2 (96-129)||(31061565-31061598)
chr2 (1-51)||(37740001-37740051)
chr2 (96-129)||(17379852-17379885)
chr2 (1-50)||(17379897-17379946)
chr2 (102-138)||(17380052-17380088)
chr2 (93-129)||(42296505-42296541)
[»] chr6 (22 HSPs)
chr6 (1-129)||(30487415-30487543)
chr6 (1-129)||(31849116-31849244)
chr6 (1-129)||(2892713-2892841)
chr6 (1-127)||(33235959-33236085)
chr6 (1-129)||(19278148-19278275)
chr6 (1-129)||(4097622-4097751)
chr6 (13-129)||(2893636-2893752)
chr6 (13-142)||(14515466-14515593)
chr6 (13-138)||(16738118-16738242)
chr6 (48-139)||(10818225-10818316)
chr6 (15-129)||(33041476-33041590)
chr6 (22-75)||(5585433-5585486)
chr6 (20-129)||(12811109-12811218)
chr6 (93-129)||(15323231-15323267)
chr6 (93-129)||(15353370-15353406)
chr6 (14-62)||(34176408-34176456)
chr6 (1-64)||(25741478-25741541)
chr6 (1-51)||(1300704-1300754)
chr6 (19-121)||(6034200-6034302)
chr6 (96-142)||(9051737-9051783)
chr6 (96-129)||(9719037-9719070)
chr6 (13-62)||(13583792-13583841)
[»] chr4 (31 HSPs)
chr4 (1-129)||(26166943-26167071)
chr4 (1-138)||(1968469-1968606)
chr4 (1-138)||(54935064-54935203)
chr4 (1-119)||(49735578-49735695)
chr4 (1-129)||(31348431-31348559)
chr4 (1-129)||(45741896-45742024)
chr4 (1-139)||(54320431-54320568)
chr4 (13-129)||(27735751-27735867)
chr4 (3-122)||(6891373-6891492)
chr4 (1-76)||(35248745-35248820)
chr4 (13-129)||(5730952-5731069)
chr4 (13-140)||(37711133-37711265)
chr4 (13-129)||(46007823-46007939)
chr4 (1-64)||(36151647-36151710)
chr4 (1-126)||(16400809-16400934)
chr4 (1-129)||(22920987-22921116)
chr4 (1-129)||(22970683-22970812)
chr4 (1-129)||(2247913-2248039)
chr4 (3-139)||(29798284-29798416)
chr4 (13-64)||(41174416-41174467)
chr4 (3-129)||(47433820-47433947)
chr4 (1-129)||(17938217-17938346)
chr4 (3-90)||(44784037-44784124)
chr4 (57-131)||(6938285-6938359)
chr4 (102-131)||(27775587-27775616)
chr4 (96-129)||(49735474-49735507)
chr4 (96-129)||(49735697-49735730)
chr4 (96-129)||(54320639-54320672)
chr4 (96-129)||(56135755-56135788)
chr4 (96-140)||(7977702-7977746)
chr4 (102-142)||(14539487-14539527)
[»] chr8 (24 HSPs)
chr8 (3-137)||(1281141-1281275)
chr8 (13-129)||(30479839-30479955)
chr8 (1-129)||(7979146-7979274)
chr8 (1-129)||(9718589-9718717)
chr8 (1-129)||(28083748-28083876)
chr8 (13-129)||(31543194-31543310)
chr8 (24-129)||(2248458-2248563)
chr8 (1-76)||(42650446-42650521)
chr8 (3-89)||(16652995-16653081)
chr8 (4-129)||(10028116-10028241)
chr8 (1-129)||(7503064-7503192)
chr8 (13-129)||(40990306-40990421)
chr8 (1-63)||(41103616-41103678)
chr8 (1-69)||(6315128-6315196)
chr8 (1-129)||(11575516-11575644)
chr8 (36-126)||(13404985-13405075)
chr8 (1-129)||(11033425-11033551)
chr8 (13-53)||(34633819-34633859)
chr8 (13-60)||(30664436-30664483)
chr8 (14-76)||(29358462-29358524)
chr8 (96-129)||(7394666-7394699)
chr8 (96-129)||(12022348-12022381)
chr8 (1-64)||(36308913-36308977)
chr8 (97-129)||(43732685-43732717)
[»] chr3 (21 HSPs)
chr3 (3-129)||(220509-220635)
chr3 (2-129)||(14897982-14898109)
chr3 (1-139)||(41110431-41110569)
chr3 (1-129)||(24560223-24560351)
chr3 (3-129)||(28582621-28582747)
chr3 (1-142)||(21773775-21773916)
chr3 (13-129)||(18654722-18654839)
chr3 (13-138)||(25655094-25655219)
chr3 (1-61)||(16275815-16275875)
chr3 (13-129)||(46204892-46205008)
chr3 (20-119)||(30200220-30200319)
chr3 (1-126)||(27542041-27542166)
chr3 (93-129)||(27541937-27541973)
chr3 (13-76)||(37102270-37102334)
chr3 (13-89)||(46556189-46556265)
chr3 (1-60)||(36569013-36569072)
chr3 (66-129)||(55428554-55428617)
chr3 (13-143)||(6803323-6803453)
chr3 (1-51)||(40463981-40464031)
chr3 (96-137)||(46205097-46205138)
chr3 (1-76)||(37807139-37807214)
[»] scaffold0067 (1 HSPs)
scaffold0067 (21-143)||(39320-39442)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-76)||(15322-15397)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-64)||(16406-16469)
[»] scaffold0096 (1 HSPs)
scaffold0096 (3-129)||(6590-6716)
[»] scaffold0026 (1 HSPs)
scaffold0026 (40-129)||(1178-1267)
[»] scaffold0171 (1 HSPs)
scaffold0171 (5-121)||(15964-16080)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 36363166 - 36362984
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||| | || |||||    
T  36363166 tgataaacaatgatataaaacttcaatgacacttgatttattttagaaaaacatgttatatagtacgtagtttaaacaagaaaattaaactctcccctcc 36363067  T
Q  101 attcccctcctaaaccctcaatccaaacaaaaccttaaagttttaactagatgtgtcaaataaaacaagttaacatgaaatag 183  Q
    |||||||| ||||||||||||||||||||   |||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  36363066 attccccttctaaaccctcaatccaaacacgtccttaaagttttaaatagatgtgccaaataaaacatgttaacatgaaatag 36362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 7544268 - 7544142
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||| | |    || ||||| |    
T  7544268 ataaacaatcatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaatttagccctcccctccct 7544169  T
Q  103 tcccctcctaaaccctcaatccaaaca 129  Q
    |||| ||||||||||||||||||||||    
T  7544168 tcccttcctaaaccctcaatccaaaca 7544142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 36362916 - 36362854
Alignment:
Q  250 acagtcgtttaccattgtaagcacaatttgtgatcgaatggttttcatttatctctccctacc 312  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36362916 acagtcgtttaccattgtaagcacaatttgtaatcgaatggttttcatttatctctccctacc 36362854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2550462 - 2550590
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||||||||||||| | ||||||| | |||||||||| |||||||| || |  ||||| ||| ||| ||||   || |||||    
T  2550462 tgataaacaatcatataatacttcaatcacacgtaatttattatagaaaaacatgttatatagtccgaatcttaaaaaagaaaagtaaaccctcccctcc 2550561  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||||||||||||||||||||||    
T  2550562 cttcccctcctaaaccctcaatccaaaca 2550590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13634845 - 13634717
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| | ||||||||||| | ||||||||| |||||||||| |||||||| |||  |||||| ||| ||| ||||   || |||||    
T  13634845 tgataaacgatcatataataattcaatcacacataatttattttagaaaaacatgttatatagtccgttatttaaaaaagaaaagtaaaccctcccctcc 13634746  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||||||||||||||||||||||    
T  13634745 cttcccctcctaaaccctcaatccaaaca 13634717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 22022963 - 22022853
Alignment:
Q  22 ttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaa---ctaaattttctcctccattcccctcctaaaccct 118  Q
    ||||||||||||| ||||||||| |||||| ||| |||||||| |||| |||||| ||  |||   ||||||  ||||||||||||||||||||||||||    
T  22022963 ttcaatcacacttaatttattttagaaaaatatgttatatagtccgtaatttaaaaaaaaaaaaaactaaatcctctcctccattcccctcctaaaccct 22022864  T
Q  119 caatccaaaca 129  Q
    |||||||||||    
T  22022863 caatccaaaca 22022853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 9857012 - 9856926
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaa 89  Q
    |||||| || |||||| ||||||||||||||||||||||||| |||||||||| |||||||| | || |||||| ||| ||||||||    
T  9857012 ataaacgatcatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtccttaatttaaaaaagaaaactaaa 9856926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 16938601 - 16938485
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| | ||||||||||||| ||||||||| || ||||||| |||||||| ||||  ||||| ||| |||  |||   || ||||| |||||||||||    
T  16938601 atataatatttcaatcacacttaatttattttagagaaacatgttatatagtccgtaacttaaaaaagaaaaacaaaccctcccctcccttcccctccta 16938502  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  16938501 aaccctcaatccaaaca 16938485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 26415015 - 26414899
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||||||||| || |||||| ||||||||||  ||||||| |||| |||||| | | ||| ||||   || ||||| ||| |||||||    
T  26415015 atataatacttcaatcacacttaatatattttagaaaaacatgtcatatagtccgtaatttaaaaacgaaaagtaaaccctcccctcccttctcctccta 26414916  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  26414915 aaccctcaatccaaaca 26414899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 40815430 - 40815303
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||  ||||||||| ||||||||  ||| |||||| ||| ||| |||||  |||| |||    
T  40815430 tgataaacaattatataatatttcaatcacacttt-tttattttataaaaacatgttatatagtctgtaatttaaaaaagaaaagtaaatcctctcttcc 40815332  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||||||| | ||||||||||||    
T  40815331 cttcccctcctaaatcttcaatccaaaca 40815303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 10476162 - 10476022
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatg-ctatatagtacgt-agtttaaacaagcaaactaaattttctcct 98  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| ||||||||||  |||||| |  || | |||||| ||| ||| ||||   |||| |    
T  10476162 tgataaacgattatataatacttcaatcacacttaatttattttagaaaaacatgtatatataatctgtaattttaaaaaagaaaagtaaaccctctcat 10476063  T
Q  99 ccattcccctcctaaaccctcaatccaaacaaaaccttaaa 139  Q
    || ||||||||||||||||||||| |||||| | |||||||    
T  10476062 cccttcccctcctaaaccctcaattcaaacacacccttaaa 10476022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 16501912 - 16502030
Alignment:
Q  13 atataaaacttcaatcacacttgatttatttt-ggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaatt-ttctcctccattcccctcc 110  Q
    ||||||||||| |||||||||||||||||||| | ||||| ||| |||||||| |||| |||||| ||  ||| ||| || | | ||||  || ||||||    
T  16501912 atataaaactttaatcacacttgatttattttagaaaaaatatgatatatagtccgtaatttaaaaaataaaagtaatttctccccctctctttccctcc 16502011  T
Q  111 taaaccctcaatccaaaca 129  Q
    |||||||||||||||||||    
T  16502012 taaaccctcaatccaaaca 16502030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 4373688 - 4373804
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| | ||||||||||||| |||||||||  |||||| || |||||||| |||| |||||| ||| ||| |||||  ||  ||   ||||| |||||    
T  4373688 atataatatttcaatcacacttaatttatttttaaaaaacttgttatatagtccgtaatttaaaaaagaaaagtaaatcctccactattttcccttccta 4373787  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  4373788 aaccctcaatccaaaca 4373804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8502945 - 8503013
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgta 69  Q
    ||||| ||||| | |||| ||||||||||||||| ||||||||| ||||| |||| |||||||| ||||    
T  8502945 tgatacacaattacataatacttcaatcacacttaatttattttagaaaagcatgttatatagtccgta 8503013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 14245157 - 14245094
Alignment:
Q  66 cgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||| |||||| ||| ||| |||||  || ||||| ||||||||||||||||||||||||||||    
T  14245157 cgtaatttaaaaaagaaaagtaaatcctcccctcccttcccctcctaaaccctcaatccaaaca 14245094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 20147075 - 20147117
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaacaaaaccttaa 138  Q
    ||||| |||||||||||||||||||||||||||| | ||||||    
T  20147075 cctcccttcccctcctaaaccctcaatccaaacacacccttaa 20147117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 13634916 - 13634949
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  13634916 cctcccttcccctcctaaaccctcaatccaaaca 13634949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 14245251 - 14245284
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  14245251 cctcccttcccctcctaaaccctcaatccaaaca 14245284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 11436977 - 11436945
Alignment:
Q  97 ctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||| ||||||||||||||||||||||||||||    
T  11436977 ctcccttcccctcctaaaccctcaatccaaaca 11436945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 36363234 - 36363270
Alignment:
Q  93 tctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||||||| |||||||||||||||||| |||||||||    
T  36363234 tctcctcccttcccctcctaaaccctccatccaaaca 36363270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 38510005 - 38510132
Alignment:
Q  2 gataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcca 101  Q
    ||||||| || |||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||| ||||||||   || |||||     
T  38510005 gataaacgataatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtccgtagtttaaaaaagaaaactaaaccctcccctccc 38510104  T
Q  102 ttcccctcctaaaccctcaatccaaaca 129  Q
    ||||||||||||||||| ||||||||||    
T  38510105 ttcccctcctaaacccttaatccaaaca 38510132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 30010464 - 30010338
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    |||||| || |||||| ||||||| ||||||| ||||||||| |||||||||| |||||||| |||| |||||||||| ||| |||||  || ||||| |    
T  30010464 ataaacgatcatataatacttcaaccacacttaatttattttagaaaaacatgttatatagtccgtaatttaaacaagaaaagtaaatcctcccctccct 30010365  T
Q  103 tcccctcctaaaccctcaatccaaaca 129  Q
    |||||||||||||||||||||||||||    
T  30010364 tcccctcctaaaccctcaatccaaaca 30010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 2859044 - 2859169
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    ||||||||| |||||| ||||||||||||||| ||||||||| |||||||||| |||||||| |||| |||||| ||  ||| ||||   || ||||| |    
T  2859044 ataaacaatcatataatacttcaatcacacttaatttatttttgaaaaacatgttatatagtccgtaatttaaaaaataaaagtaaaccctcccctccct 2859143  T
Q  103 tcccctcctaaaccctcaatccaaac 128  Q
    |||||||||||||| |||||||||||    
T  2859144 tcccctcctaaaccttcaatccaaac 2859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 12234122 - 12234006
Alignment:
Q  23 tcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctcaat 122  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||| |||    |  ||||| |||||||||||||||||||||    
T  12234122 tcaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaattaagccctaccctcccttcccctcctaaaccctcaat 12234023  T
Q  123 ccaaacaaaaccttaaa 139  Q
    ||||||| | |||||||    
T  12234022 ccaaacacacccttaaa 12234006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 51597802 - 51597674
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||  ||||||||| |||||||| |||  |||||| ||| ||| |||| | || |||||    
T  51597802 tgataaacaatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtgatttaaaaaagaaaagtaaactctcccctcc 51597703  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||  || |||||||||||||||||||    
T  51597702 cttcctttcataaaccctcaatccaaaca 51597674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 32951428 - 32951556
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| ||  ||||| ||||||||||||||| ||||||||| |||||||||| | |||||| |||| |||||| | | ||| |||| | || |||||    
T  32951428 tgataaacgatcgtataatacttcaatcacacttaatttattttagaaaaacatgttctatagtccgtaatttaaaaacgaaaagtaaactctcccctcc 32951527  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||| ||||||||| |||||||||||||    
T  32951528 cttcctctcctaaactctcaatccaaaca 32951556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 35349572 - 35349700
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| |||||||| || |||  |||||||| |||||| ||| |||||||| |||| |||||| | | ||| ||||   || |||||    
T  35349572 tgataaacaatcatataatacttcaataacccttagtttattttagaaaaaaatgttatatagtccgtaatttaaaaacgaaaagtaaaccctcccctcc 35349671  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||||||| |||||||| ||||||||||    
T  35349672 cttcccctcataaacccttaatccaaaca 35349700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 26940956 - 26941012
Alignment:
Q  4 taaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctata 60  Q
    |||||| | |||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  26940956 taaacagtcatataatacttcaatcacacttgatttattttagaaaaacatgttata 26941012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 49946710 - 49946826
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| |||||||||||| || |||||||||  ||||||||| ||||||||   | ||||||||||| ||| ||||   || | ||| |||||| ||||    
T  49946710 atataatacttcaatcacatttaatttattttaaaaaaacatgttatatagtctctggtttaaacaagaaaagtaaaccctcacatcccttccccgccta 49946809  T
Q  113 aaccctcaatccaaaca 129  Q
    | |||||||||||||||    
T  49946810 atccctcaatccaaaca 49946826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50744391 - 50744466
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| || |||| || |||||||| |||| ||||||    
T  50744391 tgataaacgatcatataatacttcaatcacacttaatttattttagagaaacctgttatatagtccgtaatttaaa 50744466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 10391994 - 10391880
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| |||| ||||||| || ||||||||| ||||||||||  ||||||| |||| |||||| | | ||| ||||   || ||||  |||||||||||    
T  10391994 atataatactttaatcacaattaatttattttagaaaaacatgtaatatagtccgtaatttaaaaatgaaaagtaaaccctcccctcgtttcccctccta 10391895  T
Q  113 aaccctcaatccaaa 127  Q
    || ||||||||||||    
T  10391894 aaacctcaatccaaa 10391880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44211015 - 44211077
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatag 63  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| |||||||| | |||||||    
T  44211015 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacacgttatatag 44211077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 41498538 - 41498401
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| ||||||||||||||| | ||||  | ||||| |||| || ||||| | || |||||| | | ||| ||||   || ||||     
T  41498538 tgataaacgatcatataatacttcaatcacacttaacttatcgtagaaaatcatgttaaatagttcataatttaaaaacgaaaagtaaaccctcccctca 41498439  T
Q  101 attcccctcctaaaccctcaatccaaacaaaaccttaa 138  Q
     |||||||||||||||||||||||||||| | ||||||    
T  41498438 cttcccctcctaaaccctcaatccaaacacacccttaa 41498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40095043 - 40095107
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttatttt-ggaaaaacatgctatatagt 64  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| | ||||||||| ||||||||    
T  40095043 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaaacatgttatatagt 40095107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 42230670 - 42230618
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatg 55  Q
    ||||||||| |||||| ||||||||||||||| |||||||||  |||||||||    
T  42230670 ataaacaatcatataatacttcaatcacacttaatttatttttaaaaaacatg 42230618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 20607422 - 20607469
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaacaaaaccttaaagttt 143  Q
    ||||| |||||||||||||||||| ||||||||| | |||||||||||    
T  20607422 cctcccttcccctcctaaaccctccatccaaacacacccttaaagttt 20607469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 35927853 - 35927811
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaacaaaaccttaa 138  Q
    ||||||||||||||||||| |||||||||||||| | ||||||    
T  35927853 cctccattcccctcctaaaacctcaatccaaacacacccttaa 35927811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36285684 - 36285738
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatg 55  Q
    |||||||| || |||||| |||||||||||||||||| ||||||  |||||||||    
T  36285684 tgataaacgatcatataatacttcaatcacacttgatatattttaaaaaaacatg 36285738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 8529930 - 8529845
Alignment:
Q  4 taaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaa 89  Q
    ||||| || |||||| ||||||||||||||| ||||||||   ||||||||| ||||||||  ||| |||||| ||| ||| ||||    
T  8529930 taaacgatcatataatacttcaatcacacttaatttatttaaaaaaaacatgttatatagtttgtaatttaaaaaagaaaagtaaa 8529845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 26324053 - 26324020
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  26324053 cctcccttcccctcctaaaccctcaatccaaaca 26324020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 1085692 - 1085728
Alignment:
Q  93 tctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||||||| |||||||||||||||||| |||||||||    
T  1085692 tctcctcccttcccctcctaaaccctctatccaaaca 1085728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 7444627 - 7444575
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatg 55  Q
    |||||| || |||||| |||||||||||||||| |||| ||| ||||||||||    
T  7444627 ataaacgatcatataatacttcaatcacacttggtttaatttagaaaaacatg 7444575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 1051608 - 1051736
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| ||||||  |||||||||||||| ||||||||| |||||||| | |||||||| |||| |||||| ||| ||| |||||  ||||||||    
T  1051608 tgataaacaatcatataatgcttcaatcacacttaatttattttagaaaaacaggttatatagttcgtaatttaaaaaagaaaaataaatcctctcctcc 1051707  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||||||||||||||||||||||    
T  1051708 cttcccctcctaaaccctcaatccaaaca 1051736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 39855987 - 39856118
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| |||| | |||||||| ||||||||| |||||||||| |||||||| |||| |||||| ||| ||| ||||   || ||||| |||||||||||    
T  39855987 atataatacttaagtcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctccta 39856086  T
Q  113 aaccctcaatccaaacaaaaccttaaagtttt 144  Q
    ||||||||||||||||| | ||||||||||||    
T  39856087 aaccctcaatccaaacacacccttaaagtttt 39856118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 13771056 - 13771193
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||||||||||||| |||  |||||||||| |||||||||  ||||||||| |||||||| |||| |||||| | | ||| |||| | || |||||    
T  13771056 tgataaacaatgatataacactcgaatcacacttaatttattttaaaaaaacatgttatatagtccgtaatttaaaaacgaaaagtaaactctcacctcc 13771155  T
Q  101 attcccctcctaaaccctcaatccaaacaaaaccttaa 138  Q
     |||||||||||||||||||||| ||||| | ||||||    
T  13771156 cttcccctcctaaaccctcaatctaaacacacccttaa 13771193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 25887326 - 25887198
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||| ||||||||||| ||||||||| |||||||||| |||||||| |||  |||| | ||| |||  ||||  || |||||    
T  25887326 tgataaacaatcatataatactccaatcacacttaatttattttagaaaaacatgttatatagtccgtgatttataaaagaaaaacaaatcctcccctcc 25887227  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||||||| |||||||||||||||||||    
T  25887226 cttcccctcataaaccctcaatccaaaca 25887198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 33655230 - 33655346
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||||||||| ||||||||| |||||||||| |||||||  | || |||||| ||| ||| ||||   || ||||  |||||||||||    
T  33655230 atataatacttcaatcacacttaatttattttagaaaaacatgttatatagcccataatttaaaaaagaaaagtaaaccctcgcctctcttcccctccta 33655329  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  33655330 aaccctcaatccaaaca 33655346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 41008315 - 41008188
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaa-catgctatatagtacgtagtttaaacaagcaaactaaattttctcctc 99  Q
    ||||||||||| ||||||  |||||||||||||| |||||||||  ||||| |||| |||||||| |||| |||||| ||| |||  ||||| || ||||    
T  41008315 tgataaacaatcatataa--cttcaatcacacttaatttattttaaaaaaaacatgttatatagtccgtaatttaaaaaagaaaaacaaattctcccctc 41008218  T
Q  100 cattcccctcctaaaccctcaatccaaaca 129  Q
    | ||||||||  ||||||||||||||||||    
T  41008217 ccttcccctctcaaaccctcaatccaaaca 41008188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 31571578 - 31571708
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaa--catgctatatagtacgtagtttaaacaagcaaactaaattttctcct 98  Q
    ||||||||||| |||||| ||||||||||||||| || | ||||  |||||  |||| ||||| || |||| |||||| ||| ||| |||| | || |||    
T  31571578 tgataaacaattatataatacttcaatcacacttaatatttttttaaaaaaagcatgttatatggtccgtaatttaaaaaagaaaagtaaactctcccct 31571677  T
Q  99 ccattcccctcctaaaccctcaatccaaaca 129  Q
    |  ||||||||||||||||||||||||||||    
T  31571678 cgcttcccctcctaaaccctcaatccaaaca 31571708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 40196642 - 40196717
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||| |||||| | |||| ||||||    
T  40196642 tgataaacaatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatattccgtaatttaaa 40196717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34228428 - 34228557
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtac-gtagtttaaacaagcaaactaaattttctcctc 99  Q
    |||||| |||| |||||| ||||||||||||||| ||||||||| |||||||||| |||||||| | ||| ||| || | | ||| |||||  || ||||    
T  34228428 tgataagcaatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagttccgtaattttaaaatgaaaagtaaatcctcccctc 34228527  T
Q  100 cattcccctcctaaaccctcaatccaaaca 129  Q
    | ||| ||||||||||| ||||| ||||||    
T  34228528 ccttctcctcctaaaccttcaattcaaaca 34228557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 47390990 - 47390861
Alignment:
Q  1 tgataaacaa-tgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctc 99  Q
    |||||||||| | |||||| |||||||||||| || || |||||| |||||||||| |||||||| | || |||||| ||| ||| ||||   ||  |||    
T  47390990 tgataaacaagtcatataatacttcaatcacaattaatgtattttagaaaaacatgttatatagttcataatttaaaaaagaaaagtaaaccctccactc 47390891  T
Q  100 cattcccctcctaaaccctcaatccaaaca 129  Q
    | |||||||||||| |||||||||||||||    
T  47390890 ccttcccctcctaacccctcaatccaaaca 47390861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 24970275 - 24970403
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| |||||||||| |||||| | | || |||||| ||| |||  ||| | |  |||||    
T  24970275 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatataatccataatttaaaaaagaaaaacaaactcttccctcc 24970374  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
        |||||||||||||||||||||||||    
T  24970375 taaaccctcctaaaccctcaatccaaaca 24970403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 26365898 - 26365773
Alignment:
Q  5 aaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccatt- 103  Q
    ||||||| |||||| ||||||||||||| |  |||||||| |||||| ||| ||||||||  ||| | |||| ||| ||| |||| | ||  |||| ||     
T  26365898 aaacaatcatataatacttcaatcacacctagtttattttagaaaaatatgttatatagtttgtaatataaaaaagaaaagtaaactctcaactcccttc 26365799  T
Q  104 cccctcctaaaccctcaatccaaaca 129  Q
    ||||||||||||||||||||||||||    
T  26365798 cccctcctaaaccctcaatccaaaca 26365773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34235117 - 34235193
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttatttt-ggaaaaacatgctatatagtacgtagtttaaa 76  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||| | ||||||||| |||||| | |||| ||||||    
T  34235117 tgataaacaatcatataatacttcaatcacacttaatttattttagaaaaaacatgttatataatccgtaatttaaa 34235193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 41497087 - 41497155
Alignment:
Q  21 cttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaa 89  Q
    |||||||||||||| ||||||||| |||||||||| |||||||| |||| |||||| ||| ||| ||||    
T  41497087 cttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaa 41497155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22163219 - 22163272
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacat 54  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| |||||||||    
T  22163219 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacat 22163272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22221927 - 22221980
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacat 54  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| |||||||||    
T  22221927 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacat 22221980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 38378177 - 38378104
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    |||||| || |||||| || ||||| ||| ||||||||||||  ||||||||| |||||||| |||||||||||    
T  38378177 ataaacgatcatataatacctcaattacaattgatttatttttaaaaaacatgttatatagttcgtagtttaaa 38378104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17853005 - 17852930
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    |||||||| || |||||| || |||||||||||| ||||||||| |||||||||| ||| || | |||| ||||||    
T  17853005 tgataaacgatcatataatacctcaatcacacttaatttattttagaaaaacatgttatttaatccgtaatttaaa 17852930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 31364247 - 31364282
Alignment:
Q  94 ctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31364247 ctcctcccttcccctcctaaaccctcaatccaaaca 31364282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37417743 - 37417806
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagt 64  Q
    |||||||| || |||||| ||||||||||||||| | ||| ||| |||||||||| ||||||||    
T  37417743 tgataaacgatcatataatacttcaatcacacttaacttaattttgaaaaacatgttatatagt 37417806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 37925880 - 37925833
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaacaaaaccttaaagttt 143  Q
    ||||| |||||||||||||||||||||||||||| | ||||| |||||    
T  37925880 cctcccttcccctcctaaaccctcaatccaaacacacccttagagttt 37925833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 36267758 - 36267791
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  36267758 cctcccttcccctcctaaaccctcaatccaaaca 36267791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 42306535 - 42306568
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||| |||||||||||||||||||||||||||||    
T  42306535 cctcaattcccctcctaaaccctcaatccaaaca 42306568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 40282235 - 40282203
Alignment:
Q  97 ctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||| ||||||||||||||||||||||||||||    
T  40282235 ctcccttcccctcctaaaccctcaatccaaaca 40282203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 48881760 - 48881796
Alignment:
Q  102 ttcccctcctaaaccctcaatccaaacaaaaccttaa 138  Q
    |||||||||||||||||||||||||||| | ||||||    
T  48881760 ttcccctcctaaaccctcaatccaaacacacccttaa 48881796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 36347651 - 36347779
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||| |||||||| |||| |||||| ||| ||| |||| | || | |||    
T  36347651 tgataaacaattatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaactctcccttcc 36347750  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||||||||||||||||||||||    
T  36347751 cttcccctcctaaaccctcaatccaaaca 36347779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 23748229 - 23748141
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaa 89  Q
    |||||||| || |||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||| ||||||||    
T  23748229 tgataaacgataatataatacttcaatcacacttgatttatttttgaaaaacatgttatatagtccgtagtttaaaaaagaaaactaaa 23748141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 6721744 - 6721821
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaat 90  Q
    |||||| | ||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||| ||| |||||||||    
T  6721744 atataatatttcaatcacacttgatttattttagaaaaacatgctatatattccgtggtttaaaaaagaaaactaaat 6721821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 8426993 - 8427109
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||| ||||| ||||||||| |||||||||| ||||| ||  ||| |||||| | | ||| |||| | || ||||| || ||||||||    
T  8426993 atataatacttcaatcgcacttaatttattttagaaaaacatgttatatcgtctgtactttaaaaatgaaaagtaaactctcccctccctttccctccta 8427092  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  8427093 aaccctcaatccaaaca 8427109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 15224816 - 15224932
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||||||||| ||||||| | |||||||||| |||||||  |||| |||||| ||| ||| ||||   || ||||| |||||||||||    
T  15224816 atataatacttcaatcacacttaatttattctagaaaaacatgttatatagcccgtaatttaaaaaagaaaagtaaaccatcccctcccttcccctccta 15224915  T
Q  113 aaccctcaatccaaaca 129  Q
    ||||||  |||||||||    
T  15224916 aacccttgatccaaaca 15224932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 35736297 - 35736181
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| |||||| |||||||| ||||||||| |||||||||| ||| |||| |||  |||||| ||| ||| |||    || ||||| |||||||||||    
T  35736297 atataatacttcagtcacacttcatttattttagaaaaacatgttatctagtccgtgatttaaaaaagaaaattaacccctcccctcccttcccctccta 35736198  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  35736197 aaccctcaatccaaaca 35736181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 36566973 - 36567090
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaac-taaattttctcctccattcccctcct 111  Q
    |||||| |||||||||||| || ||||||| | |||||||||| |||||| | | || |||||| | | |||  |||||  ||||||| |||||||||||    
T  36566973 atataatacttcaatcacaattaatttattatagaaaaacatgttatataattcataatttaaaaacgaaaaagtaaatcatctcctctattcccctcct 36567072  T
Q  112 aaaccctcaatccaaaca 129  Q
    ||||||||||||||||||    
T  36567073 aaaccctcaatccaaaca 36567090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 9427119 - 9426991
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||  |||||| ||||||||||| | | ||||| ||| |||||||||| ||||||||  ||| |||||| ||| |||  |||   ||||||||    
T  9427119 tgataaacaaacatataatacttcaatcacgcataatttagttttgaaaaacatgttatatagttggtaatttaaaaaagaaaatcaaaccctctcctcc 9427020  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||||||||  ||||||||||||    
T  9427019 cttcccctcctaaactttcaatccaaaca 9426991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 19566944 - 19567054
Alignment:
Q  14 tataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaa 113  Q
    ||||| ||||||||||||||| ||||||||| |||||||||| |||||||| |||| |||||| ||  ||| ||||      |||||  ||| |||||||    
T  19566944 tataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaatgaaattaaa-----ccctcccctcctctcctaa 19567038  T
Q  114 accctcaatccaaaca 129  Q
    ||||||||||||||||    
T  19567039 accctcaatccaaaca 19567054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16565911 - 16565850
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatata 62  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| |||||||||| ||||||    
T  16565911 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatata 16565850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 2241544 - 2241417
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| |||||||| |||||| ||||||||| ||||||| |  |||||||| |||| |||| |  |  ||| |||| | || |||||    
T  2241544 tgataaacaatcatataatacttcaattacacttaatttattttagaaaaacgtattatatagtccgtaatttataataaaaaagtaaactctcccctcc 2241445  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||||||||| ||||||||||| |||||    
T  2241444 cttcccctcct-aaccctcaatctaaaca 2241417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 39732839 - 39732966
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| |||||||||| |||| ||||||||| |||||||||| |||||||| |||| |||||| | | ||| |||||  || | | |    
T  39732839 tgataaacgatcatataatacttcaatcatacttaatttattttagaaaaacatg-tatatagtccgtaatttaaaaacgaaaagtaaatcatccctttc 39732937  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||  ||||| ||||||||||||    
T  39732938 cttcccctctcaaaccttcaatccaaaca 39732966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 40022501 - 40022441
Alignment:
Q  4 taaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagt 64  Q
    |||||||| |||||| ||||||||||||||| |||||||||  ||||||||| ||||||||    
T  40022501 taaacaatcatataatacttcaatcacacttaatttattttacaaaaacatgttatatagt 40022441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 31795879 - 31796013
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| ||||||||||||||| |||||||||  ||||||||| ||| || | |||  |||| | ||| ||| |||    || |||||    
T  31795879 tgataaacgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatttactccgtgatttagaaaagaaaattaa----tc-cctcc 31795973  T
Q  101 attcccctcctaaaccctcaatccaaacaaaaccttaaag 140  Q
     ||||||||||||||| |||||||||||||| ||| ||||    
T  31795974 cttcccctcctaaaccttcaatccaaacaaaccctaaaag 31796013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 31061565 - 31061598
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||||||||||||||||||||||||||||||||    
T  31061565 cctccattcccctcctaaaccctcaatccaaaca 31061598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37740001 - 37740051
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaa 51  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| ||||||    
T  37740001 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaa 37740051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 17379885 - 17379852
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  17379885 cctcccttcccctcctaaaccctcaatccaaaca 17379852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 17379946 - 17379897
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaa 50  Q
    ||||||||||| |||||| ||| ||||||||||| ||||||||| |||||    
T  17379946 tgataaacaatcatataatactccaatcacacttaatttattttagaaaa 17379897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 17380052 - 17380088
Alignment:
Q  102 ttcccctcctaaaccctcaatccaaacaaaaccttaa 138  Q
    |||||||||||||||||||||||||||| | ||||||    
T  17380052 ttcccctcctaaaccctcaatccaaacacacccttaa 17380088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 42296505 - 42296541
Alignment:
Q  93 tctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||||||| |||||||||||| |||||||||||||||    
T  42296505 tctcctcccttcccctcctaatccctcaatccaaaca 42296541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 30487415 - 30487543
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| |||||||||||||||||||||||||  ||||||||| |||||||| ||||||||||| ||  ||||||||   ||  ||||    
T  30487415 tgataaacaataatataatacttcaatcacacttgatttattttataaaaacatgttatatagtccgtagtttaaaaaataaaactaaaccctccactcc 30487514  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||||||||||||||||||||| |||||    
T  30487515 cttcccctcctaaaccctcaatcgaaaca 30487543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 31849244 - 31849116
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||| ||||||||  |||||||||| ||| ||||||||   || |||||    
T  31849244 tgataaacaataatataatacttcaatcacacttgatttattttagaaaaatatgttatatagtctgtagtttaaaaaagaaaactaaaccctcccctcc 31849145  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||||||| |||||||||||||| ||||    
T  31849144 cttcccctcttaaaccctcaatcctaaca 31849116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2892713 - 2892841
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| | ||||||||||||  ||||||||| ||||||| || |||||||| ||||||||||| ||| ||| |||||| || |||||    
T  2892713 tgataaacaatcatataatatttcaatcacactaaatttattttagaaaaacgtgttatatagtccgtagtttaaaaaagaaaagtaaattctcccctcc 2892812  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||| ||| | |||||||| || ||||||    
T  2892813 cttcgccttccaaaccctccattcaaaca 2892841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 33236085 - 33235959
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| ||||||  |||||||||  ||| ||||||||| |||||||||| |||||||| |||| |||||| ||| ||| |||| ||||  ||||    
T  33236085 tgataaacaatcatataattcttcaatcagtcttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaactttccactcc 33235986  T
Q  101 attcccctcctaaaccctcaatccaaa 127  Q
     ||| || |||||| ||||||||||||    
T  33235985 cttctccacctaaatcctcaatccaaa 33235959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 19278148 - 19278275
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||| | |||||||||| |||  ||||||||| |||||||||| |||||||| |||| |||||| ||| ||| ||||   || |||||    
T  19278148 tgataaacgatcatatgatacttcaatcagactaaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaa-taaaccctcccctcc 19278246  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||||||||||||| |||||||||||||    
T  19278247 cttcccctcctaaactctcaatccaaaca 19278275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 4097622 - 4097751
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttgg-aaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctc 99  Q
    |||||||| || |||||| ||||||||||||||| ||||||||||| ||||| ||| ||||| || |||| |||||| ||| ||| | ||   |  ||||    
T  4097622 tgataaacgatcatataatacttcaatcacacttaatttattttggaaaaaaaatgttatattgtccgtaatttaaaaaagaaaagtgaacccttccctc 4097721  T
Q  100 cattcccctcctaaaccctcaatccaaaca 129  Q
    | |||||||| |||||||||||||||||||    
T  4097722 ccttcccctcttaaaccctcaatccaaaca 4097751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 2893752 - 2893636
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| || |||||||||||| ||||||||| |||||||||| ||||||||  |||||||||| | | ||| |||| | ||  |||  ||||| ||| |    
T  2893752 atataatacatcaatcacacttaatttattttagaaaaacatgttatatagtctgtagtttaaaaacgaaaagtaaactctccgctcatttcccttccca 2893653  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  2893652 aaccctcaatccaaaca 2893636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 14515593 - 14515466
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| |||||| |||||||| ||||||||| || ||||||  ||| |||| |||| |||||| ||| |||  |||   || ||||| |||||||||||    
T  14515593 atataatacttcattcacacttaatttattttagagaaacat--tatctagtccgtaatttaaaaaagaaaaacaaaccctcccctcccttcccctccta 14515496  T
Q  113 aaccctcaatccaaacaaaaccttaaagtt 142  Q
    ||||||||||||||||| | ||||| ||||    
T  14515495 aaccctcaatccaaacacacccttagagtt 14515466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 16738118 - 16738242
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| |||| ||| ||||||  |||||||| |||||||||  |||||| |  ||| |||||| ||| ||| |||| | || ||||| ||||| |||||    
T  16738118 atataatacttaaataacacttactttattttagaaaaacattttatataatctgtaatttaaaaaagaaaagtaaactctcccctcc-ttcccatccta 16738216  T
Q  113 aaccctcaatccaaacaaaaccttaa 138  Q
    ||||||||||||||||||| ||||||    
T  16738217 aaccctcaatccaaacaaacccttaa 16738242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 10818316 - 10818225
Alignment:
Q  48 aaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctcaatccaaacaaaaccttaaa 139  Q
    |||||||| ||||| || |||| |||||| ||| ||| ||||   || ||||| |||||||||||||||||||||||||||| | |||||||    
T  10818316 aaaacatgttatattgtccgtaatttaaaaaagaaaaataaacaatcccctcccttcccctcctaaaccctcaatccaaacacacccttaaa 10818225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 33041590 - 33041476
Alignment:
Q  15 ataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaa 114  Q
    |||| ||||||||||||||| |||||||||  |||||||   ||||||||   || |||||| | | ||| |||||| || ||||| |||| ||||||||    
T  33041590 ataacacttcaatcacacttaatttattttaaaaaaacacattatatagtctataatttaaaaatgaaaaataaattctcccctcctttcctctcctaaa 33041491  T
Q  115 ccctcaatccaaaca 129  Q
    ||| |||||||||||    
T  33041490 cccccaatccaaaca 33041476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 5585433 - 5585486
Alignment:
Q  22 ttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaa 75  Q
    ||||||||||||| ||||||||| |||||||||| |||||||| |||| |||||    
T  5585433 ttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaa 5585486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 12811109 - 12811218
Alignment:
Q  20 acttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctc 119  Q
    ||||||||||||||| ||||||||| |||||||||  ||||||||   || |||||| ||| ||| |||    || ||||  ||||| ||||||||||||    
T  12811109 acttcaatcacacttaatttattttagaaaaacatattatatagtctctaatttaaagaagaaaagtaatccctcccctctcttcccatcctaaaccctc 12811208  T
Q  120 aatccaaaca 129  Q
    ||||||||||    
T  12811209 aatccaaaca 12811218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 15323267 - 15323231
Alignment:
Q  93 tctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||||||| ||||||||||||||||||||||||||||    
T  15323267 tctcctcccttcccctcctaaaccctcaatccaaaca 15323231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 15353406 - 15353370
Alignment:
Q  93 tctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||||||| ||||||||||||||||||||||||||||    
T  15353406 tctcctcccttcccctcctaaaccctcaatccaaaca 15353370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 34176456 - 34176408
Alignment:
Q  14 tataaaacttcaatcacacttgatttattttggaaaaacatgctatata 62  Q
    ||||| ||| ||||||||||||||||||||| |||||||||| ||||||    
T  34176456 tataatactgcaatcacacttgatttattttagaaaaacatgttatata 34176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25741541 - 25741478
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagt 64  Q
    |||||||| || ||||||||||||| |||| ||| |||||||||  ||||||||| ||||||||    
T  25741541 tgataaacgatcatataaaacttcagtcacgcttaatttattttaaaaaaacatgttatatagt 25741478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1300754 - 1300704
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaa 51  Q
    ||||||||||| |||||| ||||||||||||||| |||||| ||| |||||    
T  1300754 tgataaacaatcatataatacttcaatcacacttaatttatcttgaaaaaa 1300704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 6034200 - 6034302
Alignment:
Q  19 aacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccct 118  Q
    |||||||||||||||| ||||||||| |||||||||| |||| |||  | | |||||| ||| ||| |||||  |||  ||| || |||||| |||||||    
T  6034200 aacttcaatcacacttaatttattttagaaaaacatgttatacagtctgcaatttaaaaaagaaaagtaaatcctcttttccctttccctccgaaaccct 6034299  T
Q  119 caa 121  Q
    |||    
T  6034300 caa 6034302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 9051737 - 9051783
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaacaaaaccttaaagtt 142  Q
    ||||| |||||||| ||||||||||||||||||| | ||||||||||    
T  9051737 cctcccttcccctcttaaaccctcaatccaaacacacccttaaagtt 9051783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 9719070 - 9719037
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  9719070 cctcccttcccctcctaaaccctcaatccaaaca 9719037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 13583841 - 13583792
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatata 62  Q
    |||||| | ||||||||||||| ||||||||| |||||||||| ||||||    
T  13583841 atataatatttcaatcacacttaatttattttagaaaaacatgttatata 13583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 26167071 - 26166943
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| || ||||||| ||||||||  ||| |||||| ||| |||  ||| | || |||||    
T  26167071 tgataaacgatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtctgtaatttaaaaaagaaaaacaaactctcccctcc 26166972  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
    |||||||||||||||||||||||||||||    
T  26166971 attcccctcctaaaccctcaatccaaaca 26166943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 1968469 - 1968606
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| ||||||||||||| ||||||||||| |||||||||  |||||||| |||| |||||| | | ||| |||| | |  |||||    
T  1968469 tgataaacgatcatataatacttcaatcacacctgatttattttagaaaaacatattatatagtccgtaatttaaaaatgaaaattaaactcttccctcc 1968568  T
Q  101 attcccctcctaaaccctcaatccaaacaaaaccttaa 138  Q
     |||||||||||||||||||||||||||| | ||||||    
T  1968569 cttcccctcctaaaccctcaatccaaacacacccttaa 1968606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 54935203 - 54935064
Alignment:
Q  1 tgataaacaatgatataaa-acttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaa-ttttctcct 98  Q
    |||||||| || ||||||| ||||||||||||||| ||||||||| |||||||||| |||||||| |||| |||||| ||| ||| ||||   | | |||    
T  54935203 tgataaacgatcatataaatacttcaatcacacttaatttattttagaaaaacatgttatatagttcgtaatttaaaaaagaaaagtaaaccctccccct 54935104  T
Q  99 ccattcccctcctaaaccctcaatccaaacaaaaccttaa 138  Q
    || |||||||||||||||||||||||||||| | ||||||    
T  54935103 cccttcccctcctaaaccctcaatccaaacacacccttaa 54935064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 49735578 - 49735695
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| | ||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||| ||||||||   || |||||    
T  49735578 tgataaacgataatataatatttctatcacacttgatttattttagaaaaacatgttatatagtccgtagtttaaaaaagaaaactaaa-cctcccctcc 49735676  T
Q  101 attcccctcctaaaccctc 119  Q
     ||||||||||||||||||    
T  49735677 cttcccctcctaaaccctc 49735695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 31348431 - 31348559
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| | ||||||||||| | ||||||||| |||||||||| |||||||| |||  |||||| ||| ||| ||||   || |||||    
T  31348431 tgataaacaatcatataataattcaatcacacataatttattttagaaaaacatgttatatagtccgttatttaaaaaagaaaagtaaaccctcccctcc 31348530  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||||||||||||| |||||||||||||    
T  31348531 cttcccctcctaaactctcaatccaaaca 31348559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 45742024 - 45741896
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| |||||||||||| || ||||||||| |||||||| | |||||||| |||| |||||| ||  ||| |||||  || | | |    
T  45742024 tgataaacgatcatataatacttcaatcacatttaatttattttagaaaaacaagttatatagtccgtaatttaaaaaacaaaagtaaatcctcacattc 45741925  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
    |||||||||||||||||||||||||||||    
T  45741924 attcccctcctaaaccctcaatccaaaca 45741896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 54320568 - 54320431
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||| ||||||||||| ||||||||| |||||||||| ||||||||  ||| |||||| ||| |||  |||   || |||||    
T  54320568 tgataaacaatcatataatactccaatcacacttaatttattttagaaaaacatgatatatagtcggtaatttaaaaaagaaaatcaaaccctc-cctcc 54320470  T
Q  101 attcccctcctaaaccctcaatccaaacaaaaccttaaa 139  Q
     || ||||||||||||||||||||||||| | |||||||    
T  54320469 ctttccctcctaaaccctcaatccaaacacacccttaaa 54320431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 27735867 - 27735751
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||||||||| |||||||||  ||||||||| |||||||| |||| |||||| | | ||| ||||   |||| ||| |||||||||||    
T  27735867 atataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtaatttaaaaatgaaaattaaaccctctcttcccttcccctccta 27735768  T
Q  113 aaccctcaatccaaaca 129  Q
    ||||||| |||||||||    
T  27735767 aaccctcgatccaaaca 27735751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 6891492 - 6891373
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    |||||| || |||||| ||||||||||||||| ||||||||| |||||||||| |||||| |  ||| |||||| ||| ||| |||| | || ||||  |    
T  6891492 ataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatataatttgtattttaaaaaagaaaaataaactatcccctctct 6891393  T
Q  103 tcccctcctaaaccctcaat 122  Q
    |||||| |||||||||||||    
T  6891392 tccccttctaaaccctcaat 6891373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35248820 - 35248745
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    ||||||| ||| |||||| ||||||||||||||| ||||||||| |||||||||| |||||||| |||| ||||||    
T  35248820 tgataaataatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaa 35248745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 5730952 - 5731069
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaa-gcaaactaaattttctcctccattcccctcct 111  Q
    |||||| |||||||| |||||| ||||||||| || ||||||| |||||||| |||| |||||| || | |||  ||| | || ||||| ||||||||||    
T  5730952 atataatacttcaattacacttaatttattttagagaaacatgttatatagtccgtaatttaaaaaaagtaaaacaaactctcccctcccttcccctcct 5731051  T
Q  112 aaaccctcaatccaaaca 129  Q
    ||||||||||| ||||||    
T  5731052 aaaccctcaattcaaaca 5731069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 37711265 - 37711133
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcc-----tccattcccc 107  Q
    |||||| ||||||||||||||| ||||||||| || ||||||| |||||||| |||| |||||| ||| |||  |||   || ||     ||| ||||||    
T  37711265 atataatacttcaatcacacttaatttattttagagaaacatgttatatagtccgtaatttaaaaaagaaaaacaaaccctcccctcccttcccttcccc 37711166  T
Q  108 tcctaaaccctcaatccaaacaaaaccttaaag 140  Q
    |||||||||||||||||||||| | ||||||||    
T  37711165 tcctaaaccctcaatccaaacacacccttaaag 37711133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 46007823 - 46007939
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||| ||||| |||||||||  ||||||| | ||||||||  | | |||||| ||| ||| ||||   || ||||| |||||||||||    
T  46007823 atataatacttcaatctcacttaatttattttacaaaaacaagttatatagtctgcaatttaaaaaagaaaagtaaaccctcccctcccttcccctccta 46007922  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  46007923 aaccctcaatccaaaca 46007939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36151710 - 36151647
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagt 64  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| |||||||||| ||||||||    
T  36151710 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagt 36151647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 16400934 - 16400809
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| |||||||||| | || ||||||||| |||||||||| | ||||||  ||||| |||| ||  ||| | |||  || |||||    
T  16400934 tgataaacgatcatataatacttcaatcataattaatttattttagaaaaacatgttgtatagtttgtagtataaaaaataaaagtgaatcctcccctcc 16400835  T
Q  101 attcccctcctaaaccctcaatccaa 126  Q
     ||| |||||||||||||||||||||    
T  16400834 cttctcctcctaaaccctcaatccaa 16400809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 22921116 - 22920987
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacac-ttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctc 99  Q
    |||||||| || |||||| ||||||||||||| |||||||||| | |||||||||| ||| ||||  ||| |||||| ||| ||  |||||| ||  |||    
T  22921116 tgataaacgatcatataatacttcaatcacactttgatttattctagaaaaacatgttatgtagtttgtaatttaaaaaagaaacgtaaattctcctctc 22921017  T
Q  100 cattcccctcctaaaccctcaatccaaaca 129  Q
      || |||||||||||| ||||||||||||    
T  22921016 tttttccctcctaaaccatcaatccaaaca 22920987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 22970683 - 22970812
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacac-ttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctc 99  Q
    |||||||| || |||||| ||||||||||||| |||||||||| | |||||||||| ||| ||||  ||| |||||| ||| ||  |||||| ||  |||    
T  22970683 tgataaacgatcatataatacttcaatcacactttgatttattctagaaaaacatgttatgtagtttgtaatttaaaaaagaaacgtaaattctcctctc 22970782  T
Q  100 cattcccctcctaaaccctcaatccaaaca 129  Q
      || |||||||||||| ||||||||||||    
T  22970783 tttttccctcctaaaccatcaatccaaaca 22970812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2247913 - 2248039
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||||||||||||| | |||| |||| |||||||||| |||||| |  ||| |||||| ||| ||| |||| | || | ||     
T  2247913 tgataaacaattatataatacttcaatcacacat-attttttttagaaaaacatgttatata-tctgtaatttaaaaaagaaaagtaaactctcccttca 2248010  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||| ||||||||||||||||||||||||    
T  2248011 cttctcctcctaaaccctcaatccaaaca 2248039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 29798416 - 29798284
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    |||||| || |||||| |||||||||||||||||||||     |||||||||| ||||||||  ||| |||||| ||  ||| |||| | ||  |||  |    
T  29798416 ataaacgatcatataatacttcaatcacacttgatttaa----gaaaaacatgttatatagtctgtaatttaaaaaataaaagtaaactatcctctctct 29798321  T
Q  103 tcccctcctaaaccctcaatccaaacaaaaccttaaa 139  Q
    |||||||||||||| |||||||||||| | |||||||    
T  29798320 tcccctcctaaaccatcaatccaaacacacccttaaa 29798284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 41174467 - 41174416
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagt 64  Q
    |||||| || ||||||||| |||||||||||| |||||||||||||||||||    
T  41174467 atataatacatcaatcacatttgatttattttagaaaaacatgctatatagt 41174416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 47433820 - 47433947
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgcta-tatagtacgtagtttaaacaagcaaactaaattttctcctcca 101  Q
    |||||| || |||||| ||||||||||||||| |||||||||  ||||||||| || ||||||  ||| |||||| ||| ||| ||||   ||  ||||     
T  47433820 ataaacgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttattatagtctgtaatttaaaaaagaaaagtaaaccctcctctccc 47433919  T
Q  102 ttcccctcctaaaccctcaatccaaaca 129  Q
    ||||||||||||||| |||| |||||||    
T  47433920 ttcccctcctaaaccgtcaacccaaaca 47433947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 17938217 - 17938346
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattt-tggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctc 99  Q
    |||||||| || |||||| ||||||||||||||| ||||||||    ||||| ||| ||||||||  ||| |||||| ||| ||| |||| | ||  |||    
T  17938217 tgataaacgatcatataatacttcaatcacacttaatttatttaaaaaaaaatatgttatatagtttgtaatttaaaaaagaaaagtaaactctcatctc 17938316  T
Q  100 cattcccctcctaaaccctcaatccaaaca 129  Q
    | |||||||||||||  |||||||||||||    
T  17938317 ccttcccctcctaaattctcaatccaaaca 17938346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 44784124 - 44784037
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaat 90  Q
    |||||| || |||||| ||||||||||||||| ||||| ||| ||||||| || ||||| ||| ||| |||||| ||| ||| |||||    
T  44784124 ataaacgatcatataatacttcaatcacacttaatttactttagaaaaacctgttatatggtatgtaatttaaaaaagaaaagtaaat 44784037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 6938359 - 6938285
Alignment:
Q  57 tatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctcaatccaaacaaa 131  Q
    |||||||| |||| |||||| | | ||| |||||  |||||||| ||||||||||||| | ||||||||||||||    
T  6938359 tatatagtccgtaatttaaaaaggaaaaataaatcctctcctcccttcccctcctaaatcatcaatccaaacaaa 6938285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 27775616 - 27775587
Alignment:
Q  102 ttcccctcctaaaccctcaatccaaacaaa 131  Q
    ||||||||||||||||||||||||||||||    
T  27775616 ttcccctcctaaaccctcaatccaaacaaa 27775587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 49735507 - 49735474
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  49735507 cctcccttcccctcctaaaccctcaatccaaaca 49735474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 49735697 - 49735730
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  49735697 cctcccttcccctcctaaaccctcaatccaaaca 49735730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 54320639 - 54320672
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  54320639 cctcccttcccctcctaaaccctcaatccaaaca 54320672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 56135788 - 56135755
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  56135788 cctcccttcccctcctaaaccctcaatccaaaca 56135755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 7977702 - 7977746
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaacaaaaccttaaag 140  Q
    ||||| |||||||| ||||||||||||||||||| | ||||||||    
T  7977702 cctcctttcccctcataaaccctcaatccaaacacacccttaaag 7977746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 14539487 - 14539527
Alignment:
Q  102 ttcccctcctaaaccctcaatccaaacaaaaccttaaagtt 142  Q
    |||||||| ||||||||||||||||||| ||||||| ||||    
T  14539487 ttcccctcttaaaccctcaatccaaacacaaccttatagtt 14539527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 1281275 - 1281141
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    |||||| || |||||| ||||||| |||||||||||||| || |||||||||| ||||| || |||| |||||| ||| ||| ||||   |||| ||| |    
T  1281275 ataaacgataatataatacttcaaccacacttgatttatcttagaaaaacatgttatatcgtccgtaatttaaaaaagaaaagtaaaccctctcatccct 1281176  T
Q  103 tcccctcctaaaccctcaatccaaacaaaacctta 137  Q
    ||||||||||||||||||||||||||||| |||||    
T  1281175 tcccctcctaaaccctcaatccaaacaaatcctta 1281141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 30479839 - 30479955
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||||||||||||||||||| ||||||||||  |||||||  |||||||||| ||| ||||||||   ||  ||||||||| ||| ||    
T  30479839 atataatacttcaatcacacttgatttattttagaaaaacatgacatatagtctgtagtttaaaaaagaaaactaaaccctccgctccattcctctcata 30479938  T
Q  113 aaccctcaatccaaaca 129  Q
    |||||||||||||||||    
T  30479939 aaccctcaatccaaaca 30479955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 7979274 - 7979146
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||| ||| |||||| ||||||||  ||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||| |||| | ||  ||||    
T  7979274 tgataaataatcatataatacttcaattgcacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaactctcctctcc 7979175  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||| || ||||||||||||||||||||    
T  7979174 cttcctcttctaaaccctcaatccaaaca 7979146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 9718589 - 9718717
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| |||||||||||| || ||  ||||| |||||| ||| |||||||| | || |||||| ||| ||| |||| |||| |||||    
T  9718589 tgataaacaatcatataatacttcaatcacaattaatgaattttagaaaaatatgttatatagttcataatttaaaaaagaaaagtaaactttcccctcc 9718688  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||| ||||||||||||||||||||||||    
T  9718689 cttctcctcctaaaccctcaatccaaaca 9718717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 28083876 - 28083748
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||| ||||||||||| ||||||||| || ||||||| ||||| ||  ||| |||||| ||| |||  ||| | ||||||||    
T  28083876 tgataaacaatcatataatactccaatcacacttaatttattttagagaaacatgttatattgtctgtaatttaaaaaagaaaaacaaaatctctcctcc 28083777  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||||||||||||||||| ||||    
T  28083776 cttcccctcctaaaccctcaatccgaaca 28083748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 31543194 - 31543310
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||||||||| ||||||||| |||||||||| ||||| || | || |||||| ||| ||| ||||   || ||||| |||||||||||    
T  31543194 atataatacttcaatcacacttaatttattttagaaaaacatgttatatggtccataatttaaaaaagaaaagtaaaccctcccctcccttcccctccta 31543293  T
Q  113 aaccctcaatccaaaca 129  Q
    ||||||||||| |||||    
T  31543294 aaccctcaatcgaaaca 31543310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 2248563 - 2248458
Alignment:
Q  24 caatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctcaatc 123  Q
    ||||||||||||||||||||| |||||||||| ||||||   |||| |||||| ||| ||| | || | || ||||| |||||||||||||| |||||||    
T  2248563 caatcacacttgatttattttagaaaaacatgttatataaaccgtaatttaaaaaaggaaattgaactctcccctcccttcccctcctaaactctcaatc 2248464  T
Q  124 caaaca 129  Q
    ||||||    
T  2248463 caaaca 2248458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42650446 - 42650521
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||| |||||| | |||| ||||||    
T  42650446 tgataaacaatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatattccgtaatttaaa 42650521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 16653081 - 16652995
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaa 89  Q
    |||||| || |||||| |||||||||||||||||||||||||  ||||||||| |||||||| |||| |||||| ||| ||| ||||    
T  16653081 ataaacgatcatataatacttcaatcacacttgatttattttataaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaa 16652995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 10028241 - 10028116
Alignment:
Q  4 taaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccatt 103  Q
    ||||| || |||||| ||||||| ||||||| |||||||||  ||||| ||| ||||| || |||| |||||| ||| ||| |||| | || |||||  |    
T  10028241 taaacgatcatataagacttcaaccacacttaatttattttaaaaaaatatgttatatggtccgtaatttaaaaaagaaaagtaaaatctcacctcctat 10028142  T
Q  104 cccctcctaaaccctcaatccaaaca 129  Q
    |||||||||||||||| |||||||||    
T  10028141 cccctcctaaaccctcgatccaaaca 10028116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 7503064 - 7503192
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| |||| |||||||||| ||||||||| |||||||||| |||||| | | || |||||| | | ||| ||||   || |||||    
T  7503064 tgataaacaatcatataatactttaatcacacttaatttattttagaaaaacatgttatataatccataatttaaaaacgaaaagtaaaccctcccctcc 7503163  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
      |||||||| ||| ||||||||||||||    
T  7503164 cctcccctcccaaagcctcaatccaaaca 7503192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 40990306 - 40990421
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| |||||||||| |||| |||||||||  | ||||||| |||||||| |||| |||||| ||| |||  ||| | |||||||| |||| ||||||    
T  40990306 atataatacttcaatcagacttaatttattttaaagaaacatgttatatagtccgtaatttaaaaaagaaaaacaaactctctcctcccttcctctccta 40990405  T
Q  113 aaccctcaatccaaaca 129  Q
    | |||||||||||||||    
T  40990406 a-ccctcaatccaaaca 40990421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41103616 - 41103678
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatag 63  Q
    |||||||| || |||||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  41103616 tgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatag 41103678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6315196 - 6315128
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgta 69  Q
    |||||||| ||  ||||| ||||||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  6315196 tgataaacgatcgtataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgta 6315128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 11575516 - 11575644
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| |||| |||||||||| ||||||||| |||||||||| |||||| |  ||| |||||| | | ||| ||||   || |||||    
T  11575516 tgataaacgatcatataatactttaatcacacttaatttattttagaaaaacatgttatataatttgtaatttaaaaatgaaaagtaaaccctcccctcc 11575615  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||| | ||||||||||| ||||||||||    
T  11575616 cttctcatcctaaaccctgaatccaaaca 11575644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 13405075 - 13404985
Alignment:
Q  36 atttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctcaatccaa 126  Q
    ||||||||| |||||||||| ||||||||  ||  |||||| ||| ||| ||| || || | ||| |||||||||||||||||||||||||    
T  13405075 atttattttagaaaaacatgttatatagtctgttatttaaaaaagaaaagtaatttctcccatcccttcccctcctaaaccctcaatccaa 13404985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 11033551 - 11033425
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || ||||||   ||||||||||| | ||||||||| |||||||||| |||||||| |||  |||||| ||| ||| ||||    | |||||    
T  11033551 tgataaacgatcatataattattcaatcacacataatttattttagaaaaacatgatatatagtccgttatttaaaaaagaaaagtaaa--cccccctcc 11033454  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     |||| || ||||||||||||||||||||    
T  11033453 cttcctcttctaaaccctcaatccaaaca 11033425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 34633859 - 34633819
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaaca 53  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  34633859 atataatacttcaatcacacttgatttattttagaaaaaca 34633819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 30664483 - 30664436
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctata 60  Q
    |||||| ||||||||||||||| ||||||||| |||||||||| ||||    
T  30664483 atataatacttcaatcacacttaatttatttttgaaaaacatgttata 30664436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 29358462 - 29358524
Alignment:
Q  14 tataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    ||||| ||||||||||||||| ||||||| | |||||| ||| |||||| | |||||||||||    
T  29358462 tataatacttcaatcacacttaatttattctagaaaaatatgttatataatccgtagtttaaa 29358524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 7394666 - 7394699
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  7394666 cctcccttcccctcctaaaccctcaatccaaaca 7394699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 12022348 - 12022381
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  12022348 cctcctttcccctcctaaaccctcaatccaaaca 12022381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36308977 - 36308913
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttatttt-ggaaaaacatgctatatagt 64  Q
    ||||||||||| |||||| |||||||||||||||  ||||||||   ||||||||| ||||||||    
T  36308977 tgataaacaatcatataatacttcaatcacacttagtttattttataaaaaacatgttatatagt 36308913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 43732717 - 43732685
Alignment:
Q  97 ctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||| ||||||||||||||||||||||||||||    
T  43732717 ctcccttcccctcctaaaccctcaatccaaaca 43732685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 220509 - 220635
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    |||||||||  ||||| |||||||||| |||||||||||||| |||||||||| || ||||| |||| |||||| ||| ||| |||||| || ||||| |    
T  220509 ataaacaatcttataacacttcaatcatacttgatttattttagaaaaacatgttacatagtccgtaatttaaaaaagaaaagtaaattctcccctccct 220608  T
Q  103 tcccctcctaaaccctcaatccaaaca 129  Q
    || |||||||||||||| |||||||||    
T  220609 tctcctcctaaaccctccatccaaaca 220635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 14898109 - 14897982
Alignment:
Q  2 gataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcca 101  Q
    ||||||| || |||||| ||||||||||||||| ||||||||| ||||||||||  |||||||  ||| |||||| ||| ||| |||| ||||  ||||     
T  14898109 gataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgtcatatagtctgtaatttaaaaaagaaaagtaaaatttcctctccc 14898010  T
Q  102 ttcccctcctaaaccctcaatccaaaca 129  Q
    |||||||||||||| |||||||||||||    
T  14898009 ttcccctcctaaactctcaatccaaaca 14897982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 41110431 - 41110569
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||| ||| |||| |||| |||||| | | ||| ||||  |||  ||||    
T  41110431 tgataaacaatcatataatacttcaatcacacttaatttattttcgaaaaacatgttatctagtccgtaatttaaaaacgaaaagtaaaccttcctctcc 41110530  T
Q  101 attcccctcctaaaccctcaatccaaacaaaaccttaaa 139  Q
     ||||||||  |||||||||||||||||| | |||||||    
T  41110531 cttcccctcacaaaccctcaatccaaacacacccttaaa 41110569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 24560351 - 24560223
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| |||||||||||| || ||||||||| |||||||||| || ||||| |||| |||||| ||| |||  |||   || |||||    
T  24560351 tgataaacgatcatataatacttcaatcacatttaatttattttagaaaaacatgttacatagtccgtaatttaaaaaagaaaaacaaaccctcccctcc 24560252  T
Q  101 attcccctcctaaaccctcaatccaaaca 129  Q
     ||||||||||||||||| ||||||||||    
T  24560251 cttcccctcctaaacccttaatccaaaca 24560223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 28582621 - 28582747
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    |||||| || |||||| ||||||| |||||||||||||| || |||||||||| ||||| || |||| |||||| ||| ||| ||||   || ||||| |    
T  28582621 ataaacgataatataatacttcaaccacacttgatttatcttagaaaaacatgttatatcgtccgtaatttaaaaaagaaaagtaaaccctcccctccct 28582720  T
Q  103 tcccctcctaaaccctcaatccaaaca 129  Q
    |||||||||||| ||||| ||||||||    
T  28582721 tcccctcctaaatcctcagtccaaaca 28582747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 21773916 - 21773775
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    ||||||||||| ||||||  |||||||||||||| ||||||||| |||||||||| |||||||| |||| |||| | ||| ||| || |   |  | |||    
T  21773916 tgataaacaatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttagaaaagaaaagtatacccttccttcc 21773817  T
Q  101 attcccctcctaaaccctcaatccaaacaaaaccttaaagtt 142  Q
     ||||||||||||||| |||||||||||| | ||||| ||||    
T  21773816 cttcccctcctaaaccttcaatccaaacatacccttagagtt 21773775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 18654722 - 18654839
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaa-gcaaactaaattttctcctccattcccctcct 111  Q
    |||||| |||||||| |||||| ||||||||| || ||||||| |||||||| |||| |||||| || | |||  ||| | || ||||| ||||||||||    
T  18654722 atataatacttcaattacacttaatttattttagagaaacatgttatatagtccgtaatttaaaaaaagtaaaacaaactctcccctcccttcccctcct 18654821  T
Q  112 aaaccctcaatccaaaca 129  Q
    ||||||||||| ||||||    
T  18654822 aaaccctcaattcaaaca 18654839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 25655094 - 25655219
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||||||||| ||||||||| |||||||||| |||||||| |||| |||||| | | ||  ||||   || ||||| ||| |||| |     
T  25655094 atataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaatgaaagttaaaccctcccctcccttctcctcttc 25655193  T
Q  113 aaccctcaatccaaacaaaaccttaa 138  Q
    ||||||||||||||||| | ||||||    
T  25655194 aaccctcaatccaaacacacccttaa 25655219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16275815 - 16275875
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatat 61  Q
    ||||||||||  |||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  16275815 tgataaacaaccatataatacttcaatcacacttgatttattttagaaaaacatgttatat 16275875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 46205008 - 46204892
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| ||||||||||||||| ||||||||| |||||||||| |||||||| | || |||||| ||| ||| ||||   |||| ||  ||| ||| |||    
T  46205008 atataatacttcaatcacacttaatttattttagaaaaacatgttatatagttcataatttaaaaaagaaaagtaaacactctcatctcttctcctgcta 46204909  T
Q  113 aaccctcaatccaaaca 129  Q
    ||||||| |||||||||    
T  46204908 aaccctcgatccaaaca 46204892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 30200220 - 30200319
Alignment:
Q  20 acttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctc 119  Q
    |||| |||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||| ||||   |  ||||| ||||||||||| ||||||    
T  30200220 actttaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaacccttccctcccttcccctcctataccctc 30200319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 27542041 - 27542166
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctcc 100  Q
    |||||||| || |||||| |||||||||||| || ||||||||| |||||| ||| |||||||| | || |||||| ||| |||  ||| | || |||||    
T  27542041 tgataaacgatcatataatacttcaatcacagttaatttattttagaaaaatatgttatatagttcataatttaaaaaagaaaaacaaactctcccctcc 27542140  T
Q  101 attcccctcctaaaccctcaatccaa 126  Q
     | |||||| ||||||||| ||||||    
T  27542141 ctgcccctcgtaaaccctcgatccaa 27542166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 27541973 - 27541937
Alignment:
Q  93 tctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||||||| ||||||||||||||||||||||||||||    
T  27541973 tctcctcccttcccctcctaaaccctcaatccaaaca 27541937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 37102270 - 37102334
Alignment:
Q  13 atataaaacttcaatcacacttgatttatttt-ggaaaaacatgctatatagtacgtagtttaaa 76  Q
    |||||| ||||||| ||||||||||||||||| | ||||||||| |||||||| |||| ||||||    
T  37102270 atataatacttcaaccacacttgatttattttagaaaaaacatgttatatagtccgtaatttaaa 37102334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 46556265 - 46556189
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaa 89  Q
    |||||| ||||||||||||||  |||||||||||||||||||  ||||||||  ||| |||||| ||| ||| ||||    
T  46556265 atataatacttcaatcacactcaatttattttggaaaaacatattatatagtctgtaatttaaaaaagaaaattaaa 46556189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36569013 - 36569072
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctata 60  Q
    |||||||||||  ||||| | ||||||||||||| ||||||||| |||||||||| ||||    
T  36569013 tgataaacaatcgtataatagttcaatcacacttaatttattttagaaaaacatgatata 36569072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 55428554 - 55428617
Alignment:
Q  66 cgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    |||| |||||| ||| ||| |||||  || ||||| ||||||||||||||||||||||||||||    
T  55428554 cgtaatttaaagaagaaaagtaaatcatcccctcccttcccctcctaaaccctcaatccaaaca 55428617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 6803323 - 6803453
Alignment:
Q  13 atataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctccta 112  Q
    |||||| | ||||||||||| | |||||||||  |||||| |  |  |||||  ||| |||||| ||| ||| |||| | |||||||  |||||||||||    
T  6803323 atataatagttcaatcacacataatttattttataaaaacttattgcatagtctgtaatttaaaaaagaaaattaaactctctcctctcttcccctccta 6803422  T
Q  113 aaccctcaatccaaacaaaaccttaaagttt 143  Q
    |||| |||||||||||| |  ||||||||||    
T  6803423 aaccttcaatccaaacacacacttaaagttt 6803453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40463981 - 40464031
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaa 51  Q
    ||||||||||| |||||||| ||||||| ||||| ||||||||| ||||||    
T  40463981 tgataaacaatcatataaaaattcaatctcacttaatttattttagaaaaa 40464031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 46205097 - 46205138
Alignment:
Q  96 cctccattcccctcctaaaccctcaatccaaacaaaacctta 137  Q
    |||||||||||||||||||||||  ||||||||||| |||||    
T  46205097 cctccattcccctcctaaacccttcatccaaacaaaccctta 46205138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37807214 - 37807139
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttga-tttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    |||||||| || |||||| ||||||||||||||| | ||||||||  ||||| ||| |||||||| |||||||||||    
T  37807214 tgataaacgatcatataatacttcaatcacacttaattttattttttaaaaa-atgttatatagttcgtagtttaaa 37807139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 39320 - 39442
Alignment:
Q  21 cttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctca 120  Q
    |||||||||||||| ||||||||| |||||||||| || ||||| |||| |||||| ||| ||| ||||   || ||||| || |||| |||||||||||    
T  39320 cttcaatcacacttaatttattttagaaaaacatgttacatagtccgtaatttaaaaaagaaaagtaaaccctcccctccctttcccttctaaaccctca 39419  T
Q  121 atccaaacaaaaccttaaagttt 143  Q
    ||||||||| | |||||| ||||    
T  39420 atccaaacacacccttaatgttt 39442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15397 - 15322
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaa 76  Q
    ||||||||||| |||||| ||||||| ||||||| ||||||||| |||||||||| ||| || | |||||||||||    
T  15397 tgataaacaatcatataatacttcaaccacacttaatttattttagaaaaacatgttatgtaatccgtagtttaaa 15322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16406 - 16469
Alignment:
Q  1 tgataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagt 64  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||| || ||||||| ||||||||    
T  16406 tgataaacaatcatataatacttcaatcacacttaatttattttagacaaacatgttatatagt 16469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 6716 - 6590
Alignment:
Q  3 ataaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccat 102  Q
    |||||| || |||||| ||||||||||||||  ||||||||| ||| |||| | ||||||||  ||| |||||| ||| ||| ||||   || ||||| |    
T  6716 ataaacgatcatataatacttcaatcacactaaatttattttagaataacaagttatatagtctgtaatttaaaaaagaaaagtaaaccctcccctccct 6617  T
Q  103 tcccctcctaaaccctcaatccaaaca 129  Q
    || ||||||||| | ||||||||||||    
T  6616 tctcctcctaaaacttcaatccaaaca 6590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 1267 - 1178
Alignment:
Q  40 attttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattcccctcctaaaccctcaatccaaaca 129  Q
    ||||| ||| |||||| || ||||| |||| |||||| ||| ||| |||| | || ||||  ||||||||||||||||||||||||||||    
T  1267 attttagaataacatgttacatagtccgtaatttaaaaaagaaaagtaaactctcccctctcttcccctcctaaaccctcaatccaaaca 1178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 16080 - 15964
Alignment:
Q  5 aaacaatgatataaaacttcaatcacacttgatttattttggaaaaacatgctatatagtacgtagtttaaacaagcaaactaaattttctcctccattc 104  Q
    ||||||| ||| || ||||||||||||| | |||| ||||  ||||||||| ||||||||  ||| |||||| ||| ||| |||| | |||| ||   |     
T  16080 aaacaattataaaatacttcaatcacacataattttttttaaaaaaacatgttatatagtctgtaatttaaaaaagaaaagtaaactctctcatctcgtt 15981  T
Q  105 ccctcctaaaccctcaa 121  Q
    |||||||||||||||||    
T  15980 ccctcctaaaccctcaa 15964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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