View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_16 (Length: 376)
Name: NF20056_low_16
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 44385009 - 44384849
Alignment:
| Q |
202 |
atcaatttgaatcacgaacatttaaacatgtcaaatgattataaacaacaattttatatatgcttccaaaatcaactttctgtttcacgaaggtgaagtc |
301 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44385009 |
atcattttgaatcacgaacatttaaacatgtcaaatgattatatacaacaattttatatatgcttccaaaatcaactttctgtttcacgaaggtgaagtc |
44384910 |
T |
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| Q |
302 |
aaacatgcatgtagcagcagttgtaagaaaaggatttagggttataaaacccttctcaatt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44384909 |
aaacatgcatgtagcagcagttgtaagaaaaggatttagggttataaaacccttctcaatt |
44384849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44385060 - 44385016
Alignment:
| Q |
1 |
catagttacatgttgcttttaatatcatagtattggttttgtgag |
45 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44385060 |
catagttacatgttgcttttaatatcatagtattggttttgtgag |
44385016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 37693339 - 37693179
Alignment:
| Q |
202 |
atcaatttgaatcacgaacatttaaacatgtcaaatgattataaacaacaattttatatatgcttccaaaatcaactttctgtttcacgaaggtgaagtc |
301 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37693339 |
atcattttgaatcacgaacatttaaacatgtcaaatgattatatacaaaaattttatatatgcttccaaaatcaactttctgtttcatgaaggtgaagtc |
37693240 |
T |
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| Q |
302 |
aaacatgcatgtagcagcagttgtaagaaaaggatttagggttataaaacccttctcaatt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37693239 |
aaacatgcatgtagcagcagttgtaagaaaaggatttagggttataaaacccttctcaatt |
37693179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37693390 - 37693346
Alignment:
| Q |
1 |
catagttacatgttgcttttaatatcatagtattggttttgtgag |
45 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37693390 |
catagttacatgttgcttttaatatcatagtattggttttgtgag |
37693346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 4530688 - 4530528
Alignment:
| Q |
202 |
atcaatttgaatcacgaacatttaaacatgtcaaatgattataaacaacaattttatatatgcttccaaaatcaactttctgtttcacgaaggtgaagtc |
301 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4530688 |
atcattttgaatcacgaacatttaaacatgtcaaatgattatatacaataattttatatatgcttccaaaatcaactttctgtttcatgaaggtgaagtc |
4530589 |
T |
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| Q |
302 |
aaacatgcatgtagcagcagttgtaagaaaaggatttagggttataaaacccttctcaatt |
362 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4530588 |
aaacatgcatgtagcagcagttgtaagaaaaggatttagggttataaaacccttctcaatt |
4530528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 6541742 - 6541890
Alignment:
| Q |
37 |
ttttgtgagtttcacatctgggccattcatcgcagtttgcgttgtccacattaattatagattggaatccaaatcccttaagtagtgtgcatttgttcct |
136 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| | |
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| T |
6541742 |
ttttgttagtttcacatctcggccattcatcgcagtttgcgttgtccaaattaattactgcgtggaatccaaatcccttaagtagtgtgcatttgttctt |
6541841 |
T |
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| Q |
137 |
gctctttagagtttagtgtatctggtggtgtacggttgcaattgatgttgat |
188 |
Q |
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|||||||||| | ||||||||| ||| ||| ||||||| ||||||||||| |
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| T |
6541842 |
gctctttagactctagtgtatc---tggagtatggttgcacttgatgttgat |
6541890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 324
Target Start/End: Original strand, 6541982 - 6542113
Alignment:
| Q |
189 |
aattagaggtaaaatcaatttgaatcacgaacatttaaacatgtcaaatgattataaacaacaattttatatatgcttccaaaatcaactttctgtttca |
288 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||| || ||| ||||||||||||||||| ||| | ||| | |
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| T |
6541982 |
aattagaggtaaaatcaatttgaatcatgaacatttaaacatgtcaaataactatcaacagcatttt----tatgcttccaaaatcaattttatatttaa |
6542077 |
T |
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| Q |
289 |
cgaaggtgaagtcaaacatgcatgtagcagcagttg |
324 |
Q |
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|||||||||| | |||||||||||||||||| |||| |
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| T |
6542078 |
cgaaggtgaatttaaacatgcatgtagcagctgttg |
6542113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4530739 - 4530695
Alignment:
| Q |
1 |
catagttacatgttgcttttaatatcatagtattggttttgtgag |
45 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4530739 |
catagttacatgttgcttttaatatcatagtattggttttgtgag |
4530695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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