View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_17 (Length: 370)
Name: NF20056_low_17
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 26540830 - 26541172
Alignment:
| Q |
18 |
attgcaactgctacccttctgttctcaaagtgatctttggaatgcttaagaagcaaaccctgctagccacttatatgacagtgccgtcctctattgtcgc |
117 |
Q |
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| T |
26540830 |
attgcaactgctacccttctgttctcaaagtgatctttggaatgcttgagaagcaaaccctgctagccacttatataacagtgccgtcctctattgtcgc |
26540929 |
T |
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| Q |
118 |
tttctccattacaattgtgattcctgatcggatgtaaaatccatcttctggtctatctgcttcttgaacaccctacatacaaagcatttgaatggtaata |
217 |
Q |
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| T |
26540930 |
tttctccattacaattgtgattcctgatcggatgtaaaatccatcttctggtctatctgcttcttgaacaccctacatacaaagcatttgaatggtaata |
26541029 |
T |
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| Q |
218 |
tatcagatagatgatacttatgtttgatgctttgttcatgatgatcttacgaaagaaaaccactaactaacaaaatggactgaaatgtaaaagaaatata |
317 |
Q |
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| T |
26541030 |
tatcagatagatgatacttatgtttgatgcttcgttcatgatgatcttacgcaagaaaaccactaactaacaaaatggactgaaatgtaaaagaaatata |
26541129 |
T |
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| Q |
318 |
aggtaaagggggagccatgctcacatctttgttcatgatgatg |
360 |
Q |
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| T |
26541130 |
aggtaaagggggagccatgctcacatctttgttcatgatgatg |
26541172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 54643481 - 54643587
Alignment:
| Q |
88 |
ttatatgacagtgccgtcctctattgtcgctttctccattacaattgtgattcctgatcggatgtaaaatccatcttctggtctatctgcttcttgaaca |
187 |
Q |
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| T |
54643481 |
ttatatgacagttccatcttctattgttgccttctccattacgattgtgattcctgctcggatgtagaacccatcttctggtctatctgcttcttgtacg |
54643580 |
T |
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| Q |
188 |
ccctaca |
194 |
Q |
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| T |
54643581 |
ccctaca |
54643587 |
T |
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