View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_18 (Length: 340)
Name: NF20056_low_18
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_18 |
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| [»] scaffold0853 (2 HSPs) |
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| [»] scaffold0301 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 153 - 303
Target Start/End: Original strand, 23205674 - 23205824
Alignment:
| Q |
153 |
ttctatgaaatacatatgattttgttaagaaatatataaaagacataaagcaaatgtaattgaagaattatttcataatacctctatgtcctccatgtta |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
23205674 |
ttctatgaaatacatatgattttgttaagaaatatataaaagacataaaacaaatgtaattgaagaattaattcataatacctctatgccctccatgtta |
23205773 |
T |
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| Q |
253 |
tgactatcttcttcggcatttgattttggactttccattgttatgtgactt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23205774 |
tgactatcttcttcggcatttgattttggactttccattgttatgtgactt |
23205824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 23205522 - 23205636
Alignment:
| Q |
1 |
tcatcaagagagtcaaattccatatcaatacaaggattaatatttcgatgctcatgaacatctaagtcatgctcagggtttcttctttcttgagaatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23205522 |
tcatcaagagagtcaaattccatatcaatacaaggatcaatattttgatgctcatgaacatctaagtcatgctcagggtttcttctttcttgagaatttt |
23205621 |
T |
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| Q |
101 |
cattgcactatatat |
115 |
Q |
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||||||||||||||| |
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| T |
23205622 |
cattgcactatatat |
23205636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0853 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0853
Description:
Target: scaffold0853; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 153 - 303
Target Start/End: Complemental strand, 1191 - 1041
Alignment:
| Q |
153 |
ttctatgaaatacatatgattttgttaagaaatatataaaagacataaagcaaatgtaattgaagaattatttcataatacctctatgtcctccatgtta |
252 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
1191 |
ttctttgaaatacatatgattttgttaagaaatatataaaagacataaatcaaatgtaattgaagaattatttcataatacctctttgtccttcatgtta |
1092 |
T |
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| Q |
253 |
tgactatcttcttcggcatttgattttggactttccattgttatgtgactt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091 |
tgactatcttcttcggcatttgattttggactttccattgttatgtgactt |
1041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0853; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1343 - 1229
Alignment:
| Q |
1 |
tcatcaagagagtcaaattccatatcaatacaaggattaatatttcgatgctcatgaacatctaagtcatgctcagggtttcttctttcttgagaatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1343 |
tcatcaagagagtcaaattccatatcaatacaaggatcaatattttgatgctcatgaacatctaagtcatgctcagggtttcttctttcttgagaatttt |
1244 |
T |
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| Q |
101 |
cattgcactatatat |
115 |
Q |
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||||||||||||||| |
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| T |
1243 |
cattgcactatatat |
1229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 42987022 - 42987168
Alignment:
| Q |
156 |
tatgaaatacatatgattttgttaagaaatatataaaagacataaagcaaatgtaattgaagaattatttcataatacctctatgtcctccatgttatga |
255 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| |||||| || ||||||||| |
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| T |
42987022 |
tatgaaatacatgtgattttgttaagaaatatataaaagacataaaacaaatgtaattcaaaaattaattcataatacctttatgtcatctatgttatga |
42987121 |
T |
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| Q |
256 |
ctatcttcttcggcatttgattttggactttccattgttatgtgact |
302 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| |||||| |
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| T |
42987122 |
ctatcttcttcggcatttgattttagactttctattgttacgtgact |
42987168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 42986913 - 42986981
Alignment:
| Q |
47 |
gatgctcatgaacatctaagtcatgctcagggtttcttctttcttgagaattttcattgcactatatat |
115 |
Q |
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|||||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||| |
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| T |
42986913 |
gatgctcatggacatctaagacatgcttatagtttcttctttcttgagaattttcattgccctatatat |
42986981 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 172 - 303
Target Start/End: Complemental strand, 21866085 - 21865954
Alignment:
| Q |
172 |
ttttgttaagaaatatataaaagacataaagcaaatgtaattgaagaattatttcataatacctctatgtcctccatgttatgactatcttcttcggcat |
271 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
21866085 |
ttttgttaagaaatatataaaagacataaaacaaatgtaattgaagaattaattaataatacctttatgtcctctatgttatgaccatcttcttcggcat |
21865986 |
T |
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| Q |
272 |
ttgattttggactttccattgttatgtgactt |
303 |
Q |
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||||||||| |||||||||||||| ||||||| |
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| T |
21865985 |
ttgattttgaactttccattgttacgtgactt |
21865954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 21866173 - 21866086
Alignment:
| Q |
19 |
tccatatcaatacaaggattaatatttcgatgctcatgaacatctaagtcatgctcagggtttcttctttcttgagaattttcattgc |
106 |
Q |
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||||||||||||||||| | |||| || |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |
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| T |
21866173 |
tccatatcaatacaagggtcaatactttgatgctcatgaacatctaagacatgcttagagtttcttctttcttgagaattttcattgc |
21866086 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 153 - 302
Target Start/End: Original strand, 21155 - 21304
Alignment:
| Q |
153 |
ttctatgaaatacatatgattttgttaagaaatatataaaagacataaagcaaatgtaattgaagaattatttcataatacctctatgtcctccatgtta |
252 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||| |||||||||||| ||||||||| |||||| |
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| T |
21155 |
ttctatgaattacatatgattttgttaagaaatatataaaagatataaaataaatgtaattcaaaaattaattcataatacctttatgtcctctatgtta |
21254 |
T |
|
| Q |
253 |
tgactatcttcttcggcatttgattttggactttccattgttatgtgact |
302 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| ||||||| |||||| |
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| T |
21255 |
tgaccatcttcttcggcatttgattttagactttctattgttaagtgact |
21304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 21049 - 21117
Alignment:
| Q |
47 |
gatgctcatgaacatctaagtcatgctcagggtttcttctttcttgagaattttcattgcactatatat |
115 |
Q |
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|||||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||| |
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| T |
21049 |
gatgctcatggacatctaagacatgcttatagtttcttctttcttgagaattttcattgccctatatat |
21117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 24484657 - 24484701
Alignment:
| Q |
246 |
catgttatgactatcttcttcggcatttgattttggactttccat |
290 |
Q |
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|||||||||| ||||||||| |||||||||||||| ||||||||| |
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| T |
24484657 |
catgttatgattatcttctttggcatttgattttgaactttccat |
24484701 |
T |
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