View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20056_low_2 (Length: 589)

Name: NF20056_low_2
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20056_low_2
NF20056_low_2
[»] chr7 (15 HSPs)
chr7 (215-574)||(12820013-12820372)
chr7 (17-225)||(12820616-12820823)
chr7 (225-326)||(19351408-19351509)
chr7 (225-326)||(19779208-19779309)
chr7 (226-266)||(15572348-15572388)
chr7 (219-326)||(19888074-19888181)
chr7 (225-268)||(22028261-22028304)
chr7 (228-266)||(13417351-13417389)
chr7 (435-533)||(19326123-19326221)
chr7 (212-266)||(19326396-19326450)
chr7 (433-495)||(19344751-19344813)
chr7 (222-270)||(19721618-19721666)
chr7 (460-495)||(19374626-19374661)
chr7 (228-260)||(1986399-1986431)
chr7 (222-266)||(22080471-22080515)
[»] chr6 (6 HSPs)
chr6 (217-317)||(14748991-14749091)
chr6 (222-266)||(6935641-6935685)
chr6 (435-495)||(24254602-24254662)
chr6 (228-266)||(6954954-6954992)
chr6 (222-266)||(6943377-6943421)
chr6 (222-266)||(24254846-24254890)
[»] chr5 (2 HSPs)
chr5 (128-193)||(29641889-29641954)
chr5 (128-166)||(29821105-29821143)
[»] chr4 (1 HSPs)
chr4 (228-271)||(2910630-2910673)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 215 - 574
Target Start/End: Complemental strand, 12820372 - 12820013
Alignment:
Q  215 gcttaggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12820372 gcttaggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtt 12820273  T
Q  315 tggagaaatattagttttcatgttgttatttatcttggcattatgtttaatgaaggtgtgtatttgaatggcactgtttactggttttccaatccaaata 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12820272 tggagaaatattagttttcatgttgttatttatcttggcattatgtttaatgaaggtgtgtatttgaatggcactgtttactggttttccaatccgaata 12820173  T
Q  415 agagttttaagtatagtgagaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacatacacgcgcttgttgccccctcg 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  12820172 agagttttaagtatagtgagaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagatatacacgcgcttgctgccccctcg 12820073  T
Q  515 tgaggttgatgaagtgccagttgttcaacaaagtcttgctgtattaagggaccgcctttg 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12820072 tgaggttgatgaagtgccagttgttcaacaaagtcttgctgtattaagggaccgcctttg 12820013  T

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Target: chr7; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 12820823 - 12820616
Alignment:
Q  17 cagcgactgttacaaacgactcgagtttaataacttcacccgaatggttggttcatgtaatggattgctatgtttgtttggtacttctaacacaactgag 116  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  12820823 cagcgactgttacaaac-actcgagtttaataatttcacccgaatggttggttcatgtaatggattgctatgtttgtttggtagttctaacacaactgaa 12820725  T
Q  117 catcgaaactactggttccatatctggaacccagccactaggaaaatatctgaaagattatgatcttttcaccaacccctaaagcctgtaagtgccaggc 216  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||    
T  12820724 tatcaaaactactggttccatatctggaacccagccactaggaaaatatctgaaagattaggatcttttcaccgaccccgaaagcttgtaagtgccaggc 12820625  T
Q  217 ttaggttca 225  Q
    |||||||||    
T  12820624 ttaggttca 12820616  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 326
Target Start/End: Complemental strand, 19351509 - 19351408
Alignment:
Q  225 acatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttggagaaata 324  Q
    |||||||| ||||||| ||||| ||||||||| ||||||||| |||    | |||| |||||||| |||| ||||||  ||||||||||||||||| |||    
T  19351509 acatttggctatgatatttcaaatgacacttataaggtggtgtcctacaatgccaatgaggtgaaagtttttagtttgagtgataatgtttggagagata 19351410  T
Q  325 tt 326  Q
    ||    
T  19351409 tt 19351408  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 19779208 - 19779309
Alignment:
Q  225 acatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttggagaaata 324  Q
    |||||||| ||||||| ||||| ||||||||| |||||||||||||||||| || | ||||| ||  |||  |||||  |||||||| |||||||| |||    
T  19779208 acatttggatatgatatttcaaatgacacttataaggtggtggccttttctgccgacgaggtcaaaattttcagtttgagtgataatatttggagagata 19779307  T
Q  325 tt 326  Q
    ||    
T  19779308 tt 19779309  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 15572388 - 15572348
Alignment:
Q  226 catttggttatgataattcaactgacacttacaaggtggtg 266  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  15572388 catttggttatgataattcaaccgacacttacaaggtggtg 15572348  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 19888181 - 19888074
Alignment:
Q  219 aggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttgga 318  Q
    ||||| |||||||| ||||||| ||||| ||||||||| ||||||||||| |||||| |  | ||||| ||  ||| ||||||  |||||||| ||||||    
T  19888181 aggttaacatttggatatgatatttcaaatgacacttataaggtggtggctttttctgcagacgaggtcaaactttttagtttgagtgataatatttgga 19888082  T
Q  319 gaaatatt 326  Q
    || |||||    
T  19888081 gagatatt 19888074  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 22028261 - 22028304
Alignment:
Q  225 acatttggttatgataattcaactgacacttacaaggtggtggc 268  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  22028261 acatttggttatgataattcaactgatacttacaaggtagtggc 22028304  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 13417389 - 13417351
Alignment:
Q  228 tttggttatgataattcaactgacacttacaaggtggtg 266  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  13417389 tttggttatgataattcaacggacacttacaaggtggtg 13417351  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 533
Target Start/End: Complemental strand, 19326221 - 19326123
Alignment:
Q  435 aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacatacacgcgcttgttgccccctcgtgaggttgatgaagtgcca 533  Q
    |||||| |||| || || ||| ||||||||||||||||||||||| |||| |||||||||| ||  ||   | |||||||||  |||||||||||||||    
T  19326221 aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcgtggtgttgatgaagtgcca 19326123  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 19326450 - 19326396
Alignment:
Q  212 caggcttaggttcacatttggttatgataattcaactgacacttacaaggtggtg 266  Q
    |||||| |||||||||||||| ||||||||||||||||  ||||| |||||||||    
T  19326450 caggctcaggttcacatttgggtatgataattcaactggaacttataaggtggtg 19326396  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 19344813 - 19344751
Alignment:
Q  433 agaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacataca 495  Q
    |||||||| |||||||||   || || |||||||||||||||||||| |||||||||||||||    
T  19344813 agaaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacataca 19344751  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 19721618 - 19721666
Alignment:
Q  222 ttcacatttggttatgataattcaactgacacttacaaggtggtggcct 270  Q
    ||||||||||||||||||| ||||||| | ||||| |||||||||||||    
T  19721618 ttcacatttggttatgatatttcaactaaaacttataaggtggtggcct 19721666  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 495
Target Start/End: Original strand, 19374626 - 19374661
Alignment:
Q  460 tgattatctcccttgatcttagtaccgagacataca 495  Q
    |||||||||||||||||||| |||||||||||||||    
T  19374626 tgattatctcccttgatcttggtaccgagacataca 19374661  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 1986431 - 1986399
Alignment:
Q  228 tttggttatgataattcaactgacacttacaag 260  Q
    |||||||||||||||||||| ||||||||||||    
T  1986431 tttggttatgataattcaacagacacttacaag 1986399  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 22080471 - 22080515
Alignment:
Q  222 ttcacatttggttatgataattcaactgacacttacaaggtggtg 266  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||    
T  22080471 ttcacgtttggttatgataattcaacagaaacttataaggtggtg 22080515  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 14748991 - 14749091
Alignment:
Q  217 ttaggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttg 316  Q
    ||||||| |||||||| ||||||| |||||  |||||||| ||||||||||||||||||  | | ||||| || ||||  |||||| |||||||||||||    
T  14748991 ttaggttaacatttggatatgatatttcaaacgacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttg 14749090  T
Q  317 g 317  Q
    |    
T  14749091 g 14749091  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 6935685 - 6935641
Alignment:
Q  222 ttcacatttggttatgataattcaactgacacttacaaggtggtg 266  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||    
T  6935685 ttcacttttggttatgataattcaacagacacttacaagttggtg 6935641  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 495
Target Start/End: Complemental strand, 24254662 - 24254602
Alignment:
Q  435 aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacataca 495  Q
    |||||| |||| ||||| ||| | ||||||||||||||||||||| |||| ||||||||||    
T  24254662 aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacataca 24254602  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 6954992 - 6954954
Alignment:
Q  228 tttggttatgataattcaactgacacttacaaggtggtg 266  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  6954992 tttggttatgataattcaacagacacttacaagatggtg 6954954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 6943421 - 6943377
Alignment:
Q  222 ttcacatttggttatgataattcaactgacacttacaaggtggtg 266  Q
    ||||| ||||||||||||||||||||  ||||||||||| |||||    
T  6943421 ttcacttttggttatgataattcaacaaacacttacaagttggtg 6943377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 24254890 - 24254846
Alignment:
Q  222 ttcacatttggttatgataattcaactgacacttacaaggtggtg 266  Q
    ||||||||||| ||||||||||||||||  ||||| |||||||||    
T  24254890 ttcacatttgggtatgataattcaactggaacttataaggtggtg 24254846  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 29641889 - 29641954
Alignment:
Q  128 ctggttccatatctggaacccagccactaggaaaatatctgaaagattatgatcttttcaccaacc 193  Q
    |||||||| |||||||||||||||||| |||| |||||| |||| |||| || ||| |||||||||    
T  29641889 ctggttccgtatctggaacccagccacaaggataatatcggaaaaattaggaacttgtcaccaacc 29641954  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 29821143 - 29821105
Alignment:
Q  128 ctggttccatatctggaacccagccactaggaaaatatc 166  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  29821143 ctggttccagatctggaacccagccactaggataatatc 29821105  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 2910630 - 2910673
Alignment:
Q  228 tttggttatgataattcaactgacacttacaaggtggtggcctt 271  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||||    
T  2910630 tttggttatgataattcaactcacacttataaggttgtggcctt 2910673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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