View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_20 (Length: 335)
Name: NF20056_low_20
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 55309548 - 55309373
Alignment:
| Q |
18 |
agttttgagctggtttaattaagtgtaataggattgattgcacattgtgtcatgccgaatttgaactctctaattagttagtt-----gcaaagcaatag |
112 |
Q |
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| T |
55309548 |
agttttgagctggtttaattaagtgtaataggattgattgcacattgtgtcatgccgaatttgaactctctaattagttagttctctggcaaagcaatag |
55309449 |
T |
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| Q |
113 |
aaaactctatgtttggatatgtatgccacattcactgtcaatctaaacatgcacttatagacactttgttaagtta |
188 |
Q |
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| T |
55309448 |
aaaactctatgtttggatatgtatgccacattcactgtcaatctaaacatgcacttatagacactttgttaagtta |
55309373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 55309212 - 55309081
Alignment:
| Q |
185 |
gttagattatatttgataaaccacataaaatcgctgtgtgcattcttcttctgtgttcttctatagtttctgtttactcttgtttctatcttaacaatag |
284 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55309212 |
gttagattatatttgataaaccacataaaatcgttgtgtgcattcttcttctgtgttcttctatagtttctgtttactcttgtttctatcttaacaatag |
55309113 |
T |
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| Q |
285 |
tttacagaacaaactgatttagctatagttat |
316 |
Q |
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| T |
55309112 |
tttacagaacaaactgatttagctatagttat |
55309081 |
T |
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