View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20056_low_21 (Length: 331)

Name: NF20056_low_21
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20056_low_21
NF20056_low_21
[»] chr3 (11 HSPs)
chr3 (20-242)||(4773020-4773242)
chr3 (194-320)||(4779678-4779804)
chr3 (233-320)||(4773693-4773780)
chr3 (33-107)||(25343171-25343245)
chr3 (133-194)||(4641947-4642008)
chr3 (120-194)||(4779410-4779485)
chr3 (145-194)||(4660948-4660997)
chr3 (194-254)||(4642295-4642355)
chr3 (194-248)||(4697403-4697457)
chr3 (149-190)||(4584274-4584314)
chr3 (143-179)||(4766071-4766107)
[»] chr4 (2 HSPs)
chr4 (21-107)||(43398399-43398485)
chr4 (28-108)||(43814709-43814789)
[»] chr5 (1 HSPs)
chr5 (21-107)||(29304695-29304781)
[»] chr6 (1 HSPs)
chr6 (21-104)||(2090562-2090645)
[»] chr8 (1 HSPs)
chr8 (21-70)||(3641084-3641133)
[»] chr7 (1 HSPs)
chr7 (50-79)||(28405839-28405868)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 4773020 - 4773242
Alignment:
Q  20 ggcattactgtctgacaagattaattactgagaggaatagttcgtgcaattaggcacgaaaattttgttgtgccttttatcattttccattattaattta 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  4773020 ggcattactctctgacaagattaattactgagaggaatagttcgtgcaattaggcacgaaaattttatcgtgccttttatcattttccattattaattta 4773119  T
Q  120 aaatgactattcaatcatttaatgattttttaagagtctatgttttggatgagaaaggtaataaatatatggtcattgaagttatatggggtcggtctct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  4773120 aaatgactattcaatcatttaatgattttttaagagtctatgttttggatgaaaaaggtaataaatatatggtcattgaagttatatggggtcggtcttt 4773219  T
Q  220 aaatataatgtgatattcttaaa 242  Q
    |||||||||||||||||||||||    
T  4773220 aaatataatgtgatattcttaaa 4773242  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 194 - 320
Target Start/End: Original strand, 4779678 - 4779804
Alignment:
Q  194 attgaagttatatggggtcggtctctaaatataatgtgatattcttaaattaaaggccatgctggaaatccaagaataaccaatagaaaacaatttaatt 293  Q
    ||||||||||||||||||  |  ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||    
T  4779678 attgaagttatatggggtatgcttctaaatataatgtgatattcttaaattaaaggtcatgctgtaaatccaagaatatgcaatagaaaacaatttaatt 4779777  T
Q  294 aaaatattattttgtactttatttcat 320  Q
    ||||||||||||||||| |||||||||    
T  4779778 aaaatattattttgtaccttatttcat 4779804  T

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Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 4773693 - 4773780
Alignment:
Q  233 tattcttaaattaaaggccatgctggaaatccaagaataaccaatagaaaacaatttaattaaaatattattttgtactttatttcat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4773693 tattcttaaattaaaggccatgctggaaatccaagaataaccaatagaaaacaatttaattaaaatattattttgtactttatttcat 4773780  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 25343245 - 25343171
Alignment:
Q  33 gacaagattaattactgagaggaatagttcgtgcaattaggcacgaaaattttgttgtgccttttatcattttcc 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  25343245 gacaagattaattactgagaggattagttcgtgcaattaggcacgaaaattttctcgtgtcttttatcattttcc 25343171  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 4641947 - 4642008
Alignment:
Q  133 atcatttaatgattttttaagagtctatgttttggatgagaaaggtaataaatatatggtca 194  Q
    ||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  4641947 atcatttgaagattttttaatagtctatattttggatgagaaaggtaataaatatatggtca 4642008  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 4779410 - 4779485
Alignment:
Q  120 aaatgactattcaatcatttaatgattttttaagagtctatg-ttttggatgagaaaggtaataaatatatggtca 194  Q
    |||||| ||||||||||||| | ||||||||||||||||||| |||| ||||||||| |||||| |||||||||||    
T  4779410 aaatgagtattcaatcatttgaagattttttaagagtctatgttttttgatgagaaatgtaatacatatatggtca 4779485  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 4660948 - 4660997
Alignment:
Q  145 ttttttaagagtctatgttttggatgagaaaggtaataaatatatggtca 194  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  4660948 ttttttaagagtctatgttttcgttgagaaaggtgataaatatatggtca 4660997  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 4642295 - 4642355
Alignment:
Q  194 attgaagttatatggggtcggtctctaaatataatgtgatattcttaaattaaaggccatg 254  Q
    |||||||||||||| ||| ||||| ||| |||||| | |||||||||||||||||| ||||    
T  4642295 attgaagttatatgcggtaggtctgtaagtataatatcatattcttaaattaaaggtcatg 4642355  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 4697403 - 4697457
Alignment:
Q  194 attgaagttatatggggtcggtctctaaatataatgtgatattcttaaattaaag 248  Q
    |||||||||||||| ||| ||||| |||||||||| | |||||||||| ||||||    
T  4697403 attgaagttatatgtggtaggtctttaaatataatttcatattcttaagttaaag 4697457  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 4584274 - 4584314
Alignment:
Q  149 ttaagagtctatgttttggatgagaaaggtaataaatatatg 190  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  4584274 ttaagagtctat-ttttggatgagaaaggtaataaagatatg 4584314  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 4766071 - 4766107
Alignment:
Q  143 gattttttaagagtctatgttttggatgagaaaggta 179  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  4766071 gattttttaagattctatattttggatgagaaaggta 4766107  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 43398485 - 43398399
Alignment:
Q  21 gcattactgtctgacaagattaattactgagaggaatagttcgtgcaattaggcacgaaaattttgttgtgccttttatcattttcc 107  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  43398485 gcattactgtttgacaagattaattactgagaggaataattcgtgcaattaggcacgaaaattttgtcgtgccttttatcattttcc 43398399  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 43814709 - 43814789
Alignment:
Q  28 tgtctgacaagattaattactgagaggaatagttcgtgcaattaggcacgaaaattttgttgtgccttttatcattttcca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  43814709 tgtctgacaagattaattactgagaggaatagttcgtgcaattaggcacgaaaattttgtcgtgctttttatcattttcca 43814789  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 29304695 - 29304781
Alignment:
Q  21 gcattactgtctgacaagattaattactgagaggaatagttcgtgcaattaggcacgaaaattttgttgtgccttttatcattttcc 107  Q
    ||||||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||    
T  29304695 gcattactgtctgtcaagattaactactgagaggaatagtttgtacaattaggcacgaaaattttgtcgtgccttttatcattttcc 29304781  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 2090562 - 2090645
Alignment:
Q  21 gcattactgtctgacaagattaattactgagaggaatagttcgtgcaattaggcacgaaaattttgttgtgccttttatcattt 104  Q
    ||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  2090562 gcattactgtctgtcaatattaattaataagaggaatagttcgtgcaattaggcacaaaaattttgtcgtgccttttatcattt 2090645  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 3641084 - 3641133
Alignment:
Q  21 gcattactgtctgacaagattaattactgagaggaatagttcgtgcaatt 70  Q
    ||||||| |||| ||||||||||||||  |||||||| ||||||||||||    
T  3641084 gcattaccgtctaacaagattaattacaaagaggaatggttcgtgcaatt 3641133  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 28405868 - 28405839
Alignment:
Q  50 agaggaatagttcgtgcaattaggcacgaa 79  Q
    ||||||||||||||||||||||||||||||    
T  28405868 agaggaatagttcgtgcaattaggcacgaa 28405839  T

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