View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20056_low_25 (Length: 251)

Name: NF20056_low_25
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20056_low_25
NF20056_low_25
[»] scaffold0853 (1 HSPs)
scaffold0853 (17-251)||(1616-1850)
[»] chr7 (4 HSPs)
chr7 (17-160)||(38060430-38060573)
chr7 (17-160)||(31179300-31179443)
chr7 (20-86)||(8487261-8487328)
chr7 (20-86)||(8512935-8513002)
[»] chr4 (3 HSPs)
chr4 (17-160)||(46618885-46619028)
chr4 (20-86)||(45920045-45920111)
chr4 (30-78)||(41695938-41695987)
[»] chr3 (4 HSPs)
chr3 (17-160)||(47168417-47168560)
chr3 (20-86)||(20200404-20200470)
chr3 (20-86)||(20202588-20202654)
chr3 (20-80)||(53949877-53949938)
[»] chr2 (3 HSPs)
chr2 (14-160)||(13328187-13328333)
chr2 (20-85)||(39629273-39629338)
chr2 (20-86)||(42849253-42849319)
[»] chr5 (5 HSPs)
chr5 (17-160)||(42521153-42521296)
chr5 (17-119)||(21146407-21146509)
chr5 (157-249)||(23205155-23205247)
chr5 (68-160)||(21146513-21146605)
chr5 (30-90)||(31219530-31219590)
[»] chr1 (4 HSPs)
chr1 (17-160)||(7012496-7012639)
chr1 (17-160)||(39848339-39848482)
chr1 (20-86)||(47374273-47374339)
chr1 (20-86)||(5496774-5496840)
[»] chr8 (3 HSPs)
chr8 (17-156)||(29267241-29267380)
chr8 (17-119)||(5331365-5331467)
chr8 (68-160)||(5331471-5331563)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-86)||(106049-106116)


Alignment Details
Target: scaffold0853 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 1850 - 1616
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  1850 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaatttataccgcgatgatcgaaatccgtaacacaacatct 1751  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaagccctcttgatcaaactgttcaactagattctttgcagccccacccannnnnnnatg 216  Q
    ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||    
T  1750 gtacaaaccgaaatcacaaaatcctacatgccacactaaccaagccctcttgatcaaactgttcaactagattctttgctgccccacccatttttttatg 1651  T
Q  217 gcacctaagatagtttatactcttagggctaacca 251  Q
    |||||||||||||||||||||||| ||||||||||    
T  1650 gcacctaagatagtttatactcttggggctaacca 1616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 38060573 - 38060430
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||    
T  38060573 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgggacgatcgaaatccgtaacacaacatct 38060474  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  38060473 gtatcaaccgaaatcacaaaatcctacaggccaccgtaaccaag 38060430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 31179443 - 31179300
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||    
T  31179443 attaacaaagtgaataatgactaattccctaatttaagttctttatgcaatgttatgagtaattcataccacgatgatcgaaatccataacgcaacatct 31179344  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  31179343 gtaccaaccgaaatcacaaaatcctacaggccaccgtaaccaag 31179300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 8487328 - 8487261
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgc-aatgttatgagtaattcatacc 86  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  8487328 aacaaaatgaataatgactaattctctaatttaagttctttatgcaaatgttgtgagtaattcatacc 8487261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 8513002 - 8512935
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgc-aatgttatgagtaattcatacc 86  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  8513002 aacaaaatgaataatgactaattctctaatttaagttctttatgcaaatgttgtgagtaattcatacc 8512935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 46618885 - 46619028
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||    
T  46618885 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgacgatcgaaatccgtaacgcaacatct 46618984  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    |||  |||| |||||||||||||||||||||||| |||||||||    
T  46618985 gtaccaaccaaaatcacaaaatcctacatgccaccgtaaccaag 46619028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 45920045 - 45920111
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 86  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  45920045 aacaaaatgaataatgactaattctctaatgtaagttctttatgcaatgttgtgagtaattcatacc 45920111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 41695938 - 41695987
Alignment:
Q  30 ataatgactaattctctaatttaagttctttatgc-aatgttatgagtaa 78  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  41695938 ataatgactaattctctaatttaagttctttatgcaaatgttgtgagtaa 41695987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 47168417 - 47168560
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||    
T  47168417 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgacgatcgaaatccgtaacgcaacatct 47168516  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  47168517 gtatcaaccgaaatcacaaaatcctacaggccaccgtaaccaag 47168560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 20200404 - 20200470
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 86  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  20200404 aacaaaatgaataatgactaattctctaatgtaagttctttatgcaatgttgtgagtaattcatacc 20200470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 20202588 - 20202654
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 86  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  20202588 aacaaaatgaataatgactaattctctaatgtaagttctttatgcaatgttgtgagtaattcatacc 20202654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 53949877 - 53949938
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgc-aatgttatgagtaatt 80  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  53949877 aacaaaatgaataatgactaattctctaatttaagttctttttgcaaatgttgtgagtaatt 53949938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 13328333 - 13328187
Alignment:
Q  14 aatattaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaaca 113  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  13328333 aatattaacaaagtgaataatgactagttctctaatttaagttctttatgcaatgatatgagtaattcataccgcgatgatcgaaatccgtaacgcaaca 13328234  T
Q  114 actgtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
     |||||  ||||||||||||||||||||||| ||||| |||||||||    
T  13328233 tctgtaccaaccgaaatcacaaaatcctacaggccaccgtaaccaag 13328187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 39629273 - 39629338
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatac 85  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  39629273 aacaaaatgaataatgactaattctctaatgtaagttctttatgtaatgttgtgagtaattcatac 39629338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 42849253 - 42849319
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 86  Q
    |||||| |||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  42849253 aacaaaatgaataatgattaattttctaatgtaagttctttatgcaatgttgtgagtaattcatacc 42849319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 42521153 - 42521296
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||    
T  42521153 attaacgaagtgaataatgactaattctctaatttaagttctttatgcaatgctatgagtaattcataccgcgatgatcgaaatccgtaacgcaacatct 42521252  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  42521253 gtaccaaccgaaatcacaaaatcctacaagccaccgtaaccaag 42521296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21146407 - 21146509
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||| ||    
T  21146407 attaacaaagtgaataatgaataattatctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccataatgcaacatct 21146506  T
Q  117 gta 119  Q
    |||    
T  21146507 gta 21146509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 23205155 - 23205247
Alignment:
Q  157 caagccctcttgatcaaactgttcaactagattctttgcagccccacccannnnnnnatggcacctaagatagtttatactcttagggctaac 249  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||       ||||||||||||||||||||||||||| ||||||||    
T  23205155 caagccctcttgatcaaactgttcaactagattctttgctgtcccacccatttttttatggcacctaagatagtttatactcttggggctaac 23205247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 21146513 - 21146605
Alignment:
Q  68 gttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaactgtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |||||  |||| |||||| ||||||||||| ||||| |||||||||    
T  21146513 gttatgagtaattcataccgcgatgattgaaatccgtaacgcaacatctgtaccaaccaaaatcagaaaatcctacaggccaccgtaaccaag 21146605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 31219590 - 31219530
Alignment:
Q  30 ataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcga 90  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||    
T  31219590 ataatgactaattctctaatttaagttctttgtgcaatgttgtgagtaatttataccgcga 31219530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 7012496 - 7012639
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||    
T  7012496 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgatatgagtaattcataccgcgatgatcgaaatccgtaacgcaacatct 7012595  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    |||  ||| |||||||||||||||||||  |||| |||||||||    
T  7012596 gtaccaactgaaatcacaaaatcctacagtccaccgtaaccaag 7012639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 39848339 - 39848482
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| ||    
T  39848339 attaactaagtgaataatgactaattctctaatttaagttctttatgcaatgctatgagtaattcataccacgatgatcgaaatccataacgcaacatct 39848438  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  39848439 gtaccaaccgaaatcacaaaatcctacaagccaccgtaaccaag 39848482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 47374339 - 47374273
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 86  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  47374339 aacaaaatgaataatgactaattctctaatgtaagttctttatgcaatgttgtgagtaattcatacc 47374273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 5496840 - 5496774
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 86  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  5496840 aacaaaatgaataatgactaattctttaatgtaagttctttatgcaatgttgtgagtaattcatacc 5496774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 29267380 - 29267241
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  |    
T  29267380 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgacgatcgaaatccgtaacgcaacattt 29267281  T
Q  117 gtagaaaccgaaatcacaaaatcctacatgccacggtaac 156  Q
    |||  ||||||||||||||||||||| | ||||| |||||    
T  29267280 gtaccaaccgaaatcacaaaatcctataggccaccgtaac 29267241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 5331365 - 5331467
Alignment:
Q  17 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 116  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||| ||    
T  5331365 attaacaaagtgaataatgattaattatctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccttaatgcaacatct 5331464  T
Q  117 gta 119  Q
    |||    
T  5331465 gta 5331467  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 5331471 - 5331563
Alignment:
Q  68 gttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaactgtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 160  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||| |||||  |||| |||||| ||||||||||| | ||| |||||||||    
T  5331471 gttatgagtaattcataccgcgatgattgaaatccttaacgcaacatctgtaccaaccaaaatcagaaaatcctacaggtcaccgtaaccaag 5331563  T

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Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 106049 - 106116
Alignment:
Q  20 aacaaagtgaataatgactaattctctaatttaagttctttatgc-aatgttatgagtaattcatacc 86  Q
    |||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  106049 aacaaaatgaataatgactaattctctaatttaagttctttattcaaatgttgtgagtaattcatacc 106116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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