View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_26 (Length: 251)
Name: NF20056_low_26
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 21123493 - 21123710
Alignment:
| Q |
22 |
tatgcttcactcatatattcttctttagagaagttattaccttttggaagtctcaagtatgt--tgttcctacaaaacttggtgagtgcctcccatttaa |
119 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21123493 |
tatgcttcactcatatactcttctttagagaagttattaccttttggaagtctcaagtatgtgctgttcctacaaaacttggtgagtgcctcccatttaa |
21123592 |
T |
|
| Q |
120 |
caattgtagctttgtataacatttgaatatattttggccttcttcatatttgtattggaatcccatacaattacaatcttgtaaacataaactctcacaa |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21123593 |
caattgtagctttgtataacatttgaaaatattttggccttcttcatatttgtattggaatcccatacaattacaatcttgtaaacataaactctcacaa |
21123692 |
T |
|
| Q |
220 |
tttttgtaggtactattt |
237 |
Q |
| |
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|||||||||||||||||| |
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| T |
21123693 |
tttttgtaggtactattt |
21123710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 18659225 - 18659438
Alignment:
| Q |
24 |
tgcttcactcatatattcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaat |
123 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
18659225 |
tgctacactcatatactcttctttagagaagttattaccttttggaaatctcaagtatgttgttcctacaaaacttggcgagtgcctcccgtttaacaat |
18659324 |
T |
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| Q |
124 |
tgtagctttgtataacatttgaatatattttggccttcttcatatttgtattggaatcccatacaattacaatcttgtaaacataaactctcacaatttt |
223 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||| ||||||||||| |||||||||||||||||||||| |
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| T |
18659325 |
tgtagctttgtataacatttgaagatattttggccctcttcatatgagtattggaatgccgtacagttacaatcttgcaaacataaactctcacaatttt |
18659424 |
T |
|
| Q |
224 |
tgtaggtactattt |
237 |
Q |
| |
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|||||||||||||| |
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| T |
18659425 |
tgtaggtactattt |
18659438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 21112119 - 21112316
Alignment:
| Q |
40 |
tcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaattgtagctttgtataac |
139 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||| || ||||||||||||| |||||||||||||||||||| |
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| T |
21112119 |
tcttccttagagaagttattaccttttggaagtctcaagaatgttttgcctataaaacttggggaatgcctcccatttagcaattgtagctttgtataac |
21112218 |
T |
|
| Q |
140 |
atttgaatatattttggccttcttcatatttgtattggaatcccatacaattacaatcttgtaaacataaactctcacaatttttgtaggtactattt |
237 |
Q |
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| T |
21112219 |
attggaagatgttttggtcctcttcatatgagtattggaatcctgtacagttgcaagcttgcaaacataaactctcacaattttcgtaggtactattt |
21112316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 21131068 - 21131272
Alignment:
| Q |
29 |
cactcatatattcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaattgtag |
128 |
Q |
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|
|||||||| |||||| ||| ||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||| | ||||||||| | |||||||| |
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| T |
21131068 |
cactcatagattcttgtttgtagaagttattaccttttgggagtctcaagtaagttattccttgaaaacttggtgaatacctcccattcagcaattgtat |
21131167 |
T |
|
| Q |
129 |
ctttgtataacatttgaatatattttggccttcttcatatttgtattggaatcccatacaattacaatcttgtaaacataaactctcacaatttttgtag |
228 |
Q |
| |
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||||||| | |||| ||| || || | | ||| ||||| ||||||| |||||| |||| |||||||||||||||||| || |||||||| |||||||| |
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| T |
21131168 |
ctttgtaaagcattggaagatgcctttgtcctctgcatatgtgtattgaaatcccttacagttacaatcttgtaaacatgaagtctcacaaattttgtag |
21131267 |
T |
|
| Q |
229 |
gtact |
233 |
Q |
| |
|
||||| |
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|
| T |
21131268 |
gtact |
21131272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 21107754 - 21107652
Alignment:
| Q |
38 |
attcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaattgtagctttgtata |
137 |
Q |
| |
|
||||||||||||||||| |||||||||| || | |||||||| |||| ||||||||| |||||| ||||| |||||| ||||||| |||||||| |
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| T |
21107754 |
attcttctttagagaaggtattacctttaggtaacctcaagtaggttgatcctacaaagaatggtgaatgccttccatttcgcaattgtgtttttgtata |
21107655 |
T |
|
| Q |
138 |
aca |
140 |
Q |
| |
|
||| |
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|
| T |
21107654 |
aca |
21107652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 39131668 - 39131460
Alignment:
| Q |
29 |
cactcatatattcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggtgagtgcctcccatttaacaattgtag |
128 |
Q |
| |
|
|||||||| | |||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||||| ||||| | ||| |
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| T |
39131668 |
cactcatagactcttgtttagtgaagttattaccttttggaagtctcaagtaagttgttcctcgaaaacttggtgaatacctcccattcaacaaatttag |
39131569 |
T |
|
| Q |
129 |
ctttgtataacatttgaatatattttggccttcttcatatttgtattggaatcccatacaattacaatcttgtaaacataaactctcacaatttttgtag |
228 |
Q |
| |
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||||||||| |||||||| || |||| | |||| || ||| ||||||||| | || ||||||||||| ||||||||| |||| |||||||||||| |
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| T |
39131568 |
ctttgtatagcatttgaagatgccttggtccctttcaaatgtgtgttggaatcctttgcagttacaatcttgcaaacataaagtctcgcaatttttgtag |
39131469 |
T |
|
| Q |
229 |
gtactattt |
237 |
Q |
| |
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||||||||| |
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|
| T |
39131468 |
gtactattt |
39131460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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