View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_4 (Length: 480)
Name: NF20056_low_4
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 176 - 461
Target Start/End: Original strand, 28771161 - 28771447
Alignment:
| Q |
176 |
caacaccttgtccgcaactcattccggacataacnnnnnnnn--tgtatttggtctaaattctgtatcgaattctaaacattcaaaaataaattcaactg |
273 |
Q |
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| T |
28771161 |
caacaccttgtccgcaactcattccggacataacaaaaaaaaaatctatttggtctaaattctgtatcgaattctaaacattcaaaaataaattcaactg |
28771260 |
T |
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| Q |
274 |
ctattttttacaaagataaattcaattgctagnnnnnnncatgaatacaaaaatggtaaccaagcattacccacttgtttattcatattttcatagactt |
373 |
Q |
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| T |
28771261 |
ctattttttacaaagataaattcaattgctagaaaaaaacatgaatacaaaaatggtaaccaagcattacccacttgtttattcatattt-catagactt |
28771359 |
T |
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| Q |
374 |
agctagctgagggtaatctttaagtagttttccatctgaaagggtctcatcctctttctgtggggtccataatacctcaccagcctga |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28771360 |
agctagctgagggtaatctttaagtagttttccatctgaaagggtctcatcctctttctgtggggtccataatacctcaccagcctga |
28771447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 28771027 - 28771167
Alignment:
| Q |
11 |
cagagagctttttggcatgatgattgggagtctttgcagcaagataaactcccaactttggatcaaagaaaattaaaactcatttgcaagttgatcgttg |
110 |
Q |
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|||||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28771027 |
cagagagctttttggcatgatgatcgggagtcttagcaacaggataaactcccaactttggatcaaagaaaattaaaactcatttgcaagttgatcattg |
28771126 |
T |
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| Q |
111 |
aggcaagcaagtgacagtcgactggaaaagagctcaacacc |
151 |
Q |
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| T |
28771127 |
aggcaaacaagtgatagtcgactggaaaagagctcaacacc |
28771167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 360 - 460
Target Start/End: Original strand, 28764493 - 28764593
Alignment:
| Q |
360 |
attttcatagacttagctagctgagggtaatctttaagtagttttccatctgaaagggtctcatcctctttctgtggggtccataatacctcaccagcct |
459 |
Q |
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||||||||||||||||||| |||| |||| ||||||||||| ||| ||||||| | ||| |||| ||||||||||||||||||||| || |||||||||| |
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| T |
28764493 |
attttcatagacttagctaactgaaggtagtctttaagtagctttgcatctgagacggtgtcattctctttctgtggggtccataacacttcaccagcct |
28764592 |
T |
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| Q |
460 |
g |
460 |
Q |
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| T |
28764593 |
g |
28764593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 457
Target Start/End: Original strand, 28743341 - 28743418
Alignment:
| Q |
380 |
ctgagggtaatctttaagtagttttccatctgaaagggtctcatcctctttctgtggggtccataatacctcaccagc |
457 |
Q |
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|||| |||| || |||||||| ||||| | ||| ||||| | |||||| |||||||||||||||| ||||||||||| |
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| T |
28743341 |
ctgaaggtagtcattaagtagctttccttatgagagggtatgatcctccttctgtggggtccatagcacctcaccagc |
28743418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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