View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20056_low_5 (Length: 450)

Name: NF20056_low_5
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20056_low_5
NF20056_low_5
[»] chr2 (13 HSPs)
chr2 (16-433)||(37264872-37265294)
chr2 (78-150)||(27412826-27412898)
chr2 (78-150)||(29798507-29798579)
chr2 (78-141)||(7302141-7302203)
chr2 (79-150)||(37413169-37413240)
chr2 (84-150)||(12599855-12599921)
chr2 (78-150)||(2256970-2257042)
chr2 (90-150)||(6765621-6765681)
chr2 (77-141)||(7640656-7640720)
chr2 (78-126)||(31166121-31166169)
chr2 (98-150)||(31397779-31397831)
chr2 (78-150)||(31815877-31815949)
chr2 (110-146)||(42475104-42475140)
[»] chr5 (9 HSPs)
chr5 (84-150)||(781868-781934)
chr5 (85-150)||(34767178-34767243)
chr5 (78-147)||(40837896-40837965)
chr5 (110-150)||(1257144-1257184)
chr5 (90-138)||(2705518-2705566)
chr5 (78-150)||(8544979-8545051)
chr5 (102-150)||(21376695-21376743)
chr5 (78-150)||(29695014-29695086)
chr5 (78-150)||(40782355-40782427)
[»] chr1 (13 HSPs)
chr1 (92-149)||(33382249-33382306)
chr1 (79-150)||(11410627-11410698)
chr1 (77-146)||(4806789-4806858)
chr1 (79-150)||(33153870-33153941)
chr1 (89-139)||(7652111-7652161)
chr1 (80-126)||(28219061-28219107)
chr1 (78-150)||(8269358-8269430)
chr1 (78-126)||(11701965-11702013)
chr1 (77-149)||(16580790-16580862)
chr1 (90-150)||(23915500-23915560)
chr1 (90-150)||(32923829-32923889)
chr1 (90-150)||(40227840-40227900)
chr1 (110-150)||(41950074-41950114)
[»] chr4 (15 HSPs)
chr4 (78-150)||(5318829-5318901)
chr4 (79-150)||(16067911-16067982)
chr4 (78-147)||(35050535-35050604)
chr4 (79-150)||(19908692-19908763)
chr4 (78-149)||(44221446-44221517)
chr4 (77-142)||(7371546-7371611)
chr4 (90-147)||(35021460-35021517)
chr4 (102-150)||(2431020-2431068)
chr4 (98-150)||(9028062-9028114)
chr4 (90-142)||(10564463-10564515)
chr4 (91-150)||(12145011-12145071)
chr4 (81-121)||(23928463-23928503)
chr4 (77-137)||(43539813-43539873)
chr4 (77-125)||(51298711-51298759)
chr4 (90-150)||(53617845-53617905)
[»] chr3 (10 HSPs)
chr3 (78-146)||(2186421-2186489)
chr3 (85-147)||(1111834-1111896)
chr3 (85-150)||(7827514-7827579)
chr3 (85-150)||(7829902-7829967)
chr3 (78-150)||(7464481-7464553)
chr3 (85-150)||(7824813-7824878)
chr3 (110-150)||(4947816-4947856)
chr3 (90-150)||(5117219-5117279)
chr3 (77-137)||(8121740-8121800)
chr3 (90-150)||(27185488-27185548)
[»] chr7 (10 HSPs)
chr7 (84-150)||(37235316-37235382)
chr7 (89-150)||(18773746-18773807)
chr7 (90-150)||(7994874-7994934)
chr7 (78-148)||(24225973-24226043)
chr7 (85-139)||(35165539-35165593)
chr7 (79-149)||(38779980-38780050)
chr7 (84-150)||(40187626-40187692)
chr7 (78-150)||(429168-429240)
chr7 (78-150)||(7720192-7720264)
chr7 (90-150)||(35142139-35142199)
[»] chr6 (6 HSPs)
chr6 (78-140)||(23507391-23507453)
chr6 (101-138)||(9987212-9987249)
chr6 (82-150)||(10278456-10278524)
chr6 (80-149)||(11528743-11528814)
chr6 (90-150)||(12232172-12232232)
chr6 (90-149)||(34828317-34828377)
[»] chr8 (8 HSPs)
chr8 (84-149)||(29546898-29546963)
chr8 (90-150)||(32944830-32944890)
chr8 (77-147)||(11040412-11040481)
chr8 (85-150)||(12800890-12800955)
chr8 (78-150)||(6038265-6038337)
chr8 (90-150)||(6314313-6314373)
chr8 (90-150)||(11771718-11771777)
chr8 (101-141)||(34073754-34073794)
[»] scaffold0050 (1 HSPs)
scaffold0050 (78-150)||(53370-53442)
[»] scaffold1327 (1 HSPs)
scaffold1327 (90-149)||(567-626)
[»] scaffold0350 (1 HSPs)
scaffold0350 (78-150)||(1247-1319)
[»] scaffold0027 (1 HSPs)
scaffold0027 (78-150)||(42724-42796)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 37265294 - 37264872
Alignment:
Q  16 atggggcatactcaagaaaagacatactataatcactttaattagttatcctaattaa-gtgccgtgaacttaattcagttgatagggacaataaataaa 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||    
T  37265294 atggggcatacttaagaaaagacatactataatcactttaattagttatactaataaatgtgccgtgaacttaattcagttgataaggacaatacataaa 37265195  T
Q  115 atatgtaaggtctgacgttcgaaccccgaccaccacnnnnnnntgtgtctatcccatatatatccaaccacaattagtaaagtcatattgtttctcaacc 214  Q
    |||||||||||||||||||||||| ||| |||||||       ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  37265194 atatgtaaggtctgacgttcgaactccggccaccaccaaaaaatgtgtctatcccatatatatcaaaccacagttagtaaagtcatattgtttctcaacc 37265095  T
Q  215 ttcccttcacatgcatcttgcgttttcatcataacattttttatcaccttaaataa--acacaaattttacagaggaaaatcatgtgtgttcattaattg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||    
T  37265094 ttcccttcacatgcatcttgcgttttcatcataacattttttatcaccttaaataaagacacaaattttacagaggaaaatcatgtgtgtgcattaattg 37264995  T
Q  313 ggtgcttccaattaatttccattggaaataatggata--tttttnnnnnnnnttaatggaataaatattgtaaaatactacaaagttgagatactttacc 410  Q
    |||| ||||||||||||||||||||||||||||||||  |||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37264994 ggtgtttccaattaatttccattggaaataatggatattttttttaaaaaaattaatggaataaatattgtaaaatactacaaagttgagatactttacc 37264895  T
Q  411 aaatagaaagagaatcaagagcc 433  Q
    |||||||||||||||||||||||    
T  37264894 aaatagaaagagaatcaagagcc 37264872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 27412898 - 27412826
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| ||||||| ||| ||||||  |||| ||||||||||||||  |||| |||||||||||||||    
T  27412898 cgtgagcttaactcagttggtagagacaatgcataatatatgtaaggtctgttgttcaaaccccgaccaccac 27412826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 29798579 - 29798507
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| ||||||| || |||||||  ||||||||| ||||||| |  ||||||||||||||||||||    
T  29798579 cgtgagcttaactcagttggtatggacaatgcataaaatatttaaggtcaggggttcgaaccccgaccaccac 29798507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 7302203 - 7302141
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaacccc 141  Q
    ||||||||||  ||||||||||||||||||  |||||||||| ||||||||  |||||||||||    
T  7302203 cgtgaacttagctcagttgatagggacaatgcataaaatatgcaaggtctg-ggttcgaacccc 7302141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 37413240 - 37413169
Alignment:
Q  79 gtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||| |||||||| ||||||||||  |||||||||| ||||||| |  ||||| |||||||||||||    
T  37413240 gtgaatttagttcagttggtagggacaatgcataaaatatgcaaggtctaaaattcgagccccgaccaccac 37413169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 12599921 - 12599855
Alignment:
Q  84 cttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||||  || |||||||| |||| ||||| ||||||||  ||||||||||||||||||||    
T  12599921 cttaactcagttagtatggacaatacataatatatgcaaggtctggggttcgaaccccgaccaccac 12599855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 2256970 - 2257042
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| ||||||| || |||||||  |||| ||||| ||||||||  |||||||||||| |||||||    
T  2256970 cgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtctggggttcgaaccccggccaccac 2257042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 6765621 - 6765681
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| || |||||||  ||||||||||||||||| |  ||||||||| ||||||||||    
T  6765621 tcagttggtatggacaatgcataaaatatgtaaggtccggggttcgaaccacgaccaccac 6765681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 7640656 - 7640720
Alignment:
Q  77 ccgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaacccc 141  Q
    |||||| ||||| ||| ||| || |||||||| |||| |||||||||| |||| |||||||||||    
T  7640656 ccgtgagcttaactcaattggtaaggacaatacataatatatgtaaggcctgaggttcgaacccc 7640720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 31166169 - 31166121
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtc 126  Q
    ||||||||||||||||||||||| || |||  |||| ||||||||||||    
T  31166169 cgtgaacttaattcagttgatagagataatgtataatatatgtaaggtc 31166121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 31397831 - 31397779
Alignment:
Q  98 tagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||  ||||||||||||||||| ||  ||||||||||| |||||||    
T  31397831 tagggacaatgcataaaatatgtaaggtccgagattcgaaccccggccaccac 31397779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 31815949 - 31815877
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| ||||||| ||||||||||  |||| ||||| |||||| |  |||| |||||||||||||||    
T  31815949 cgtgagcttaactcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccccgaccaccac 31815877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 42475140 - 42475104
Alignment:
Q  110 ataaaatatgtaaggtctgacgttcgaaccccgacca 146  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  42475140 ataaaatatgcaaggtctgaggttcgaaccccgacca 42475104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 781868 - 781934
Alignment:
Q  84 cttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||||||||||||||||  |||||||||| ||||||||  |||||||||| |||||||||    
T  781868 cttaactcagttgatagggacaatgtataaaatatgcaaggtctggggttcgaaccctgaccaccac 781934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 34767243 - 34767178
Alignment:
Q  85 ttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||||| || | |||||| ||||||||||||||||| || |||| ||||||| |||||||    
T  34767243 ttaattcagttgttatgaacaatacataaaatatgtaaggtccgaagttcaaaccccggccaccac 34767178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 40837965 - 40837896
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccac 147  Q
    ||||||||||| ||||||| || |||||||| |||||||||| |||||| |  |||| ||||||||||||    
T  40837965 cgtgaacttaactcagttggtatggacaatatataaaatatgcaaggtccggggttcaaaccccgaccac 40837896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 1257184 - 1257144
Alignment:
Q  110 ataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||||||||||||  ||||||||||| ||||||||    
T  1257184 ataaaatatgtaaggtctggggttcgaaccccaaccaccac 1257144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 2705566 - 2705518
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaac 138  Q
    |||||||||| | |||||| |||| ||||||||||||||| ||||||||    
T  2705566 tcagttgataagaacaatacataatatatgtaaggtctgaggttcgaac 2705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 8545051 - 8544979
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| |||||||||| |||||||  |||| ||||| |||||| |  |||||||| |||||||||||    
T  8545051 cgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtccggagttcgaactccgaccaccac 8544979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 21376695 - 21376743
Alignment:
Q  102 gacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| |||  ||||||||| ||||| ||||||||||||||||||||    
T  21376695 gacaatacatactatatgtaagatctgaggttcgaaccccgaccaccac 21376743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 29695014 - 29695086
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| |||||||||| |||||||  |||| |||||||||||  |  |||| |||||||||||||||    
T  29695014 cgtgaccttaactcagttgatatggacaatgcataatatatgtaaggttcgtggttcaaaccccgaccaccac 29695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 40782355 - 40782427
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| |||||  ||||| |||||| |||| |||||||||||| |  ||| ||||||||||||||||    
T  40782355 cgtgagcttaactcagtcaataggaacaatacataatatatgtaaggtcaggggtttgaaccccgaccaccac 40782427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 33382306 - 33382249
Alignment:
Q  92 agttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccacca 149  Q
    |||||||||||| ||||||||| ||||||||||||||  |||| ||||||||||||||    
T  33382306 agttgatagggataataaataatatatgtaaggtctggtgttcaaaccccgaccacca 33382249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 11410627 - 11410698
Alignment:
Q  79 gtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||| ||||| ||||||| || | |||||| |||||||||||||||||||  ||||||| ||||||||||||    
T  11410627 gtgagcttaactcagttggtatgaacaatacataaaatatgtaaggtctggggttcgaatcccgaccaccac 11410698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 4806858 - 4806789
Alignment:
Q  77 ccgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgacca 146  Q
    |||||||||||||||||||| ||| ||||||  |||| ||||||||||| ||| |||| |||| ||||||    
T  4806858 ccgtgaacttaattcagttggtagagacaatgtataatatatgtaaggtttgaggttcaaacctcgacca 4806789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 33153941 - 33153870
Alignment:
Q  79 gtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||| ||||| ||||||| ||||||||||  |||| |||||||||||| || |||| |||||||| ||||||    
T  33153941 gtgagcttaactcagttggtagggacaatgcataatatatgtaaggtccgaggttcaaaccccgaacaccac 33153870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 7652111 - 7652161
Alignment:
Q  89 ttcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaacc 139  Q
    |||||||| || |||||||| |||| ||||||||||||||| |||||||||    
T  7652111 ttcagttggtatggacaatacataatatatgtaaggtctgaagttcgaacc 7652161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 28219107 - 28219061
Alignment:
Q  80 tgaacttaattcagttgatagggacaataaataaaatatgtaaggtc 126  Q
    ||||||||||||| ||||||||||||||  |||| ||||||||||||    
T  28219107 tgaacttaattcaattgatagggacaatgtataatatatgtaaggtc 28219061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 8269430 - 8269358
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||  ||||||| || |||||||| |||| ||||| |||||| |  |||| |||||||||||||||    
T  8269430 cgtgaacttagctcagttggtaaggacaatacataatatatgcaaggtccggggttcaaaccccgaccaccac 8269358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 11701965 - 11702013
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtc 126  Q
    ||||| ||||||||||||| | ||||||||  |||||||||||||||||    
T  11701965 cgtgagcttaattcagttggttgggacaatgcataaaatatgtaaggtc 11702013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 16580862 - 16580790
Alignment:
Q  77 ccgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccacca 149  Q
    |||||| ||||||||||||| || |||||||  |||| ||||| ||||||||  ||||||| ||| |||||||    
T  16580862 ccgtgagcttaattcagttggtatggacaatgtataatatatgcaaggtctggggttcgaatcccaaccacca 16580790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 23915560 - 23915500
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||| | |||||  |||| ||||| ||||| ||||||||||| ||||||||||||    
T  23915560 tcagttgatatgaacaatgcataatatatggaaggtgtgacgttcgaatcccgaccaccac 23915500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 32923829 - 32923889
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| ||||||||||  |||| ||||| ||||||||| |||| ||| |||||||||||    
T  32923829 tcagttggtagggacaatgcataatatatgaaaggtctgaagttcaaactccgaccaccac 32923889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 40227840 - 40227900
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| || |||||||  |||||||||  ||||||||  ||||||||||||||||||||    
T  40227840 tcagttggtatggacaatgcataaaatatacaaggtctggggttcgaaccccgaccaccac 40227900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 41950114 - 41950074
Alignment:
Q  110 ataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||| ||||| ||||||||| ||||||||||||||||||||    
T  41950114 ataatatatgcaaggtctgaggttcgaaccccgaccaccac 41950074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 5318829 - 5318901
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||||| |||||| |||| |||||| |||||| |||||||||| |   |||||||||||||||||||    
T  5318829 cgtgaacttaatacagttggtaggaacaatacataaaaaatgtaaggtccgggcttcgaaccccgaccaccac 5318901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 16067982 - 16067911
Alignment:
Q  79 gtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||||||  |||||| | |||||| |||||||||| |||||| || |||||||| |||||||||||    
T  16067982 gtgaacttaattctattgatatgaacaatacataaaatatgcaaggtccgaggttcgaactccgaccaccac 16067911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 35050604 - 35050535
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccac 147  Q
    ||||||||||||||||||| || | |||||  |||| ||||||||||| ||| |||| ||||||||||||    
T  35050604 cgtgaacttaattcagttggtatgtacaatttataatatatgtaaggtttgaagttcaaaccccgaccac 35050535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 19908692 - 19908763
Alignment:
Q  79 gtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||| ||||| ||||||| || |||||||  |||| ||||| |||||| || ||||||||||||||||||||    
T  19908692 gtgagcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttcgaaccccgaccaccac 19908763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 44221446 - 44221517
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccacca 149  Q
    ||||| ||||||||||||| || |||||||  |||| ||||| ||||||||| |||||||||| ||| ||||    
T  44221446 cgtgagcttaattcagttggtatggacaatgcataatatatgcaaggtctgaggttcgaaccctgactacca 44221517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 7371611 - 7371546
Alignment:
Q  77 ccgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccg 142  Q
    |||||| ||||| |||||||||| |||||||| |||| ||||| |||||| |  ||||||||||||    
T  7371611 ccgtgagcttaactcagttgataaggacaatacataatatatgcaaggtccggggttcgaaccccg 7371546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 35021517 - 35021460
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccac 147  Q
    |||||||||| |||||||| |||||||||| |||||  |  |||||||||||||||||    
T  35021517 tcagttgatatggacaatacataaaatatgcaaggttcggggttcgaaccccgaccac 35021460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 2431020 - 2431068
Alignment:
Q  102 gacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| |||||||||| ||||| ||| |||| |||||||||||||||    
T  2431020 gacaatacataaaatatgcaaggtatgaggttcaaaccccgaccaccac 2431068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 9028114 - 9028062
Alignment:
Q  98 tagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||  |||||||||||||||||||  ||||||| ||| ||||||||    
T  9028114 tagggacaatgcataaaatatgtaaggtctggggttcgaatcccaaccaccac 9028062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 10564515 - 10564463
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccg 142  Q
    ||||||| || |||||||| |||| ||||||||||||||| |||| |||||||    
T  10564515 tcagttggtatggacaatacataatatatgtaaggtctgaggttcaaaccccg 10564463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 12145071 - 12145011
Alignment:
Q  91 cagttgatagggacaataaataaaatatgtaaggtctgacgttcgaa-ccccgaccaccac 150  Q
    |||||||||| ||||||  |||| ||||||||||||||| ||| ||| |||||||||||||    
T  12145071 cagttgatagagacaatgtataatatatgtaaggtctgaagtttgaacccccgaccaccac 12145011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 23928463 - 23928503
Alignment:
Q  81 gaacttaattcagttgatagggacaataaataaaatatgta 121  Q
    |||||||||||||||||||| ||||||| |||| |||||||    
T  23928463 gaacttaattcagttgatagagacaatacataatatatgta 23928503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 43539813 - 43539873
Alignment:
Q  77 ccgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaa 137  Q
    |||||| |||| |||||||| ||||||||||| |||| ||||||| || |||| |||||||    
T  43539813 ccgtgagcttagttcagttggtagggacaatacataatatatgtaggggctgaggttcgaa 43539873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 51298759 - 51298711
Alignment:
Q  77 ccgtgaacttaattcagttgatagggacaataaataaaatatgtaaggt 125  Q
    |||||||||||| |||||||||| |||||||| |||| ||||| |||||    
T  51298759 ccgtgaacttaactcagttgataaggacaatatataatatatgcaaggt 51298711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 53617845 - 53617905
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| ||||||||||  |||| |||| |||||||||  |||| |||||||||||||||    
T  53617845 tcagttggtagggacaatgcataatatatttaaggtctgctgttcaaaccccgaccaccac 53617905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 2186489 - 2186421
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgacca 146  Q
    ||||||||||| ||||||| || |||||||| |||| ||||||||||||||  |||| |||||||||||    
T  2186489 cgtgaacttaactcagttggtatggacaatacataatatatgtaaggtctggggttcaaaccccgacca 2186421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 1111896 - 1111834
Alignment:
Q  85 ttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccac 147  Q
    |||| ||||||||||||||||||| |||| ||||| ||||||||  |||| ||||||||||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtctggggttcaaaccccgaccac 1111834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 7827514 - 7827579
Alignment:
Q  85 ttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||| |||||||||| |||||||  |||| ||||||||||||||  ||||||| ||||||||||||    
T  7827514 ttaactcagttgatatggacaatgcataatatatgtaaggtctggagttcgaaacccgaccaccac 7827579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 7829902 - 7829967
Alignment:
Q  85 ttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||| |||||||||| |||||||  |||| ||||||||||||||| |||||||  |||||||||||    
T  7829902 ttaactcagttgatatggacaatgcataatatatgtaaggtctgaagttcgaaatccgaccaccac 7829967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 7464553 - 7464481
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| ||||||| ||||||||||  |||| |||||||||||| |  |||| |||||||||||||||    
T  7464553 cgtgagcttaactcagttggtagggacaatgcataatatatgtaaggtccggggttcaaaccccgaccaccac 7464481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 7824813 - 7824878
Alignment:
Q  85 ttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||| ||||||||||  ||||||| |||| ||||| ||||||||  ||||||| ||||||||||||    
T  7824813 ttaactcagttgatatagacaatacataatatatgcaaggtctggagttcgaaacccgaccaccac 7824878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 4947856 - 4947816
Alignment:
Q  110 ataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||||||||||||  ||| ||||||||||||||||    
T  4947856 ataaaatatgtaaggtctggggtttgaaccccgaccaccac 4947816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 5117219 - 5117279
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||| |||||||| |||| ||||||||||| ||| |||||||  || ||||||||    
T  5117219 tcagttgataaggacaatacataatatatgtaaggtttgaggttcgaagtccaaccaccac 5117279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 8121740 - 8121800
Alignment:
Q  77 ccgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaa 137  Q
    |||||| |||| |||||||| || ||||||||  ||| ||||||||||||||| |||||||    
T  8121740 ccgtgaccttagttcagttggtaaggacaatatttaatatatgtaaggtctgaagttcgaa 8121800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 27185488 - 27185548
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| ||||||||||| |||| ||||| ||||||||  |||| |||| ||||||||||    
T  27185488 tcagttggtagggacaatacataatatatgcaaggtctggggttcaaacctcgaccaccac 27185548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 37235316 - 37235382
Alignment:
Q  84 cttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||||||||| |||||||  || | ||||| ||||||||| ||| ||||||||||||||||    
T  37235316 cttaattcagttgatatggacaatgcatgatatatgcaaggtctgaagtttgaaccccgaccaccac 37235382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 18773807 - 18773746
Alignment:
Q  89 ttcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||| |||||||  ||||||||||||||||| |  |||| |||||||||||||||    
T  18773807 ttcagttgatatggacaatgcataaaatatgtaaggtccggggttcaaaccccgaccaccac 18773746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 7994934 - 7994874
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| ||||||||| | |||| ||||||||||||||  |||| |||||||||||||||    
T  7994934 tcagttggtagggacaaaacataatatatgtaaggtctggggttcaaaccccgaccaccac 7994874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 24226043 - 24225973
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccacc 148  Q
    ||||||||||  ||||||  || |||||||  ||||||||||||||||| || ||||||||| ||||||||    
T  24226043 cgtgaacttagctcagttcgtatggacaatgcataaaatatgtaaggtccgaggttcgaacctcgaccacc 24225973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 35165539 - 35165593
Alignment:
Q  85 ttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaacc 139  Q
    |||| ||||||||||  ||||||| |||| ||||||||||||||| |||||||||    
T  35165539 ttaactcagttgataacgacaatacataatatatgtaaggtctgaggttcgaacc 35165593  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 38779980 - 38780050
Alignment:
Q  79 gtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccacca 149  Q
    |||| ||||| ||||||| |||| ||||||||||| ||||||||||| ||   ||| ||||||||||||||    
T  38779980 gtgagcttaactcagttggtaggaacaataaataatatatgtaaggtttgggattcaaaccccgaccacca 38780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 40187692 - 40187626
Alignment:
Q  84 cttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||||| ||||||||||  |||| ||||||||||||||  |||| |||||||| ||||||    
T  40187692 cttaactcagttggtagggacaatgcataatatatgtaaggtctgcggttcaaaccccgaacaccac 40187626  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 429240 - 429168
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| |||||||||| ||| |||| |||| ||||| ||||| ||  || |||||||||||||||||    
T  429240 cgtgagcttaactcagttgatatggataatacataatatatgcaaggtttggagtccgaaccccgaccaccac 429168  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 7720264 - 7720192
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| ||| |||||||||| |||||||| |||| |||||||| || |   |||| |||||||||||||||    
T  7720264 cgtgaacctaactcagttgatatggacaatatataatatatgtaaagttttgagttcaaaccccgaccaccac 7720192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 35142199 - 35142139
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||| |||||||  |||| ||||| || || ||| ||||||||||||||||||||    
T  35142199 tcagttgatatggacaatgcataatatatgcaaagtttgaggttcgaaccccgaccaccac 35142139  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 23507453 - 23507391
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccc 140  Q
    |||||||||| |||||||| || |||||||| |||||||||||||||| ||  ||||||||||    
T  23507453 cgtgaacttagttcagttggtaaggacaatacataaaatatgtaaggtttggggttcgaaccc 23507391  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 9987212 - 9987249
Alignment:
Q  101 ggacaataaataaaatatgtaaggtctgacgttcgaac 138  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  9987212 ggacaatatataaaatatgtaaggtctgaggttcgaac 9987249  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 10278456 - 10278524
Alignment:
Q  82 aacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| ||| |||||| |||||||  |||| ||||| ||| ||||| ||||||||||| ||||||||    
T  10278456 aacttaactcaattgatatggacaatgcataatatatgcaagatctgaagttcgaaccccaaccaccac 10278524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 11528743 - 11528814
Alignment:
Q  80 tgaacttaattcagttgatagggacaataaataaaatatgtaaggtct--gacgttcgaaccccgaccacca 149  Q
    |||||||| |||||||| ||||||||||  || | |||||||||||||  || |||| ||||||||||||||    
T  11528743 tgaacttagttcagttggtagggacaatttatgatatatgtaaggtctaagatgttcaaaccccgaccacca 11528814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 12232232 - 12232172
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||||||||||  |||| ||||| |  |||||  ||||||||||||||||||||    
T  12232232 tcagttgatagggacaatgcataatatatgcagtgtctggggttcgaaccccgaccaccac 12232172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 34828317 - 34828377
Alignment:
Q  90 tcagttgatagggacaataaataa-aatatgtaaggtctgacgttcgaaccccgaccacca 149  Q
    ||||||| || |||||||  |||| |||||||||||||||| |||||||||||| ||||||    
T  34828317 tcagttggtatggacaatgcataataatatgtaaggtctgaggttcgaaccccggccacca 34828377  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 29546898 - 29546963
Alignment:
Q  84 cttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccacca 149  Q
    ||||| ||||||||||||||||||| |||| ||||| ||||||||  |||| ||||| ||||||||    
T  29546898 cttaactcagttgatagggacaatagataatatatgcaaggtctggggttcaaaccctgaccacca 29546963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 32944890 - 32944830
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||| || |||||||  |||||||||| ||||||||| |||| |||||||||||||||    
T  32944890 tcagttggtatggacaatgcataaaatatgcaaggtctgaggttcaaaccccgaccaccac 32944830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 11040481 - 11040412
Alignment:
Q  77 ccgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccac 147  Q
    |||||| ||||| ||||||||| || |||||  ||||||||||||||||| || |||| ||||||||||||    
T  11040481 ccgtgagcttaactcagttgattgg-acaatgcataaaatatgtaaggtccgaagttcaaaccccgaccac 11040412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 12800955 - 12800890
Alignment:
Q  85 ttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||||| || |||||||| |||| ||||| |||||| |  |||| |||||||||||||||    
T  12800955 ttaattcagttggtatggacaatacataatatatgcaaggtccggggttcaaaccccgaccaccac 12800890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 6038337 - 6038265
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||  |||||||||| |||||||  |||| ||||||||||||||  |||| ||| ||| |||||||    
T  6038337 cgtgaacttagctcagttgatatggacaatgcataatatatgtaaggtctggagttcaaactccggccaccac 6038265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 6314373 - 6314313
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    |||||||||| |||||||  |||||||||| |||||| ||  ||||||||||| |||||||    
T  6314373 tcagttgataaggacaatgcataaaatatgcaaggtccgaaattcgaaccccggccaccac 6314313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 11771718 - 11771777
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||| ||||||| |||| ||||| |||||| || ||||||||| ||||||||||    
T  11771718 tcagttgatagagacaatacataatatatgcaaggtccga-gttcgaacctcgaccaccac 11771777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 34073794 - 34073754
Alignment:
Q  101 ggacaataaataaaatatgtaaggtctgacgttcgaacccc 141  Q
    |||||||  |||| |||||||||||||||||||||||||||    
T  34073794 ggacaatgcataatatatgtaaggtctgacgttcgaacccc 34073754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 53442 - 53370
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||| ||||| |||||||  |||||||||  |||||||||| ||||||||  |||| |||||||||||||||    
T  53442 cgtgagcttaactcagttggaagggacaatgcataaaatatgcaaggtctggggttcaaaccccgaccaccac 53370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 567 - 626
Alignment:
Q  90 tcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccacca 149  Q
    |||||||||| ||||| |  |||| ||||||||||||||||| | |||||||||||||||    
T  567 tcagttgataaggacagtgtataatatatgtaaggtctgacgcttgaaccccgaccacca 626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 1247 - 1319
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||  |||||||||| |||||||  |||| ||||||||||||||  |||| ||| ||| |||||||    
T  1247 cgtgaacttagctcagttgatatggacaatgcataatatatgtaaggtctggagttcaaactccggccaccac 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 42724 - 42796
Alignment:
Q  78 cgtgaacttaattcagttgatagggacaataaataaaatatgtaaggtctgacgttcgaaccccgaccaccac 150  Q
    ||||||||||| |||||||  ||  |||||| |||| ||||||||||||||  |||| ||||| |||||||||    
T  42724 cgtgaacttaactcagttggaagaaacaatatataatatatgtaaggtctgtagttcaaacccggaccaccac 42796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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