View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20056_low_7 (Length: 430)
Name: NF20056_low_7
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20056_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 3602291 - 3601972
Alignment:
| Q |
17 |
aaaaattgtattatgtcaaccaacatttttgcgtgtgaataacaacctattatttcattttcaaggcagtataacaaaac---ttaaatcaaatacctgt |
113 |
Q |
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| T |
3602291 |
aaaaattgtattatgtcaaccaacatttttgcgtgtgaataacaacctattatttcattttcaaggcagtataacaaaacaacttaaatcaaatacctgt |
3602192 |
T |
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| Q |
114 |
accctcaggggtattaaaaggagaaggtgcatcagagcttagaagataaggtttccttgcccaatactcttgaaacctctgtttcgcatactccttgtag |
213 |
Q |
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| T |
3602191 |
accctcaggggtattaaaaggagaaggtgcatcagagcttagaagataaggtttccttgcccaatactcttgaaacctctgtttcgcatactccttgtag |
3602092 |
T |
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| Q |
214 |
tcaaattcaattgtatttacttgtccctgagcaaaataatcagaagatgagacactgtagaagtaaaacttcctcgaaaccaaaagtactttgttgtagt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602091 |
tcaaattcaattgtatttacttgtccctgagcaaaataatcagaagatgagacgctgtagaagtaaaacttcctcgaaaccaaaagtactttgttgtagt |
3601992 |
T |
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| Q |
314 |
ttccgccgaacattaaaatt |
333 |
Q |
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|||||||||||||||||||| |
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| T |
3601991 |
ttccgccgaacattaaaatt |
3601972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 327 - 429
Target Start/End: Complemental strand, 3601946 - 3601844
Alignment:
| Q |
327 |
taaaatttatattgatgagaagcccacttatggctaattcatattcaaaagtttagtcacgagagaaatatttatttgaaaaacataatactccaagcca |
426 |
Q |
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| T |
3601946 |
taaaatttatattgatgagaagcccacttatggctaattcatattcaaaagtttagtcacgaaagaaatatttatttgaaaagcataatactccaagcca |
3601847 |
T |
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| Q |
427 |
ttt |
429 |
Q |
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||| |
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| T |
3601846 |
ttt |
3601844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 15545120 - 15545180
Alignment:
| Q |
165 |
tttccttgcccaatactcttgaaacctctgtttcgcatactccttgtagtcaaattcaatt |
225 |
Q |
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|||||||| ||| |||||||||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
15545120 |
tttccttgaccagtactcttgaaacctttgttttgcatactccttgtagtcaaaatcaatt |
15545180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 15325738 - 15325798
Alignment:
| Q |
165 |
tttccttgcccaatactcttgaaacctctgtttcgcatactccttgtagtcaaattcaatt |
225 |
Q |
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|||||||| ||| ||||||| | |||| ||||| ||||||||||| |||||||| |||||| |
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| T |
15325738 |
tttccttgaccagtactcttaagacctttgttttgcatactccttatagtcaaaatcaatt |
15325798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 15506107 - 15506167
Alignment:
| Q |
165 |
tttccttgcccaatactcttgaaacctctgtttcgcatactccttgtagtcaaattcaatt |
225 |
Q |
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|||||||| ||| ||||||| | |||| ||||| ||||||||||| |||||||| |||||| |
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| T |
15506107 |
tttccttgaccagtactcttaagacctttgttttgcatactccttatagtcaaaatcaatt |
15506167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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