View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20056_low_8 (Length: 429)

Name: NF20056_low_8
Description: NF20056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20056_low_8
NF20056_low_8
[»] chr1 (1 HSPs)
chr1 (1-410)||(37584186-37584599)


Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 37584186 - 37584599
Alignment:
Q  1 atagattttgtcaacatagttttgtccgaagaatgaaataccacaaacacaatccagaaccccttgcaatccaggaatctcgtaagcagattattacgcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||    
T  37584186 atagattttgtcaacatagttttgtccgaagaatgaaataccacaaacacaatccagatccccctgcaatccatgaatcttgtaagcagattattacgcc 37584285  T
Q  101 acatcggtactttaaattacttgattttttagggttgggacaattcaaaaattgttctgttcttgacaacttcttttctttcttaaaaaatatg----ta 196  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    ||    
T  37584286 acatctgtactttaaattacttgattttttagggttgggacaattcaaaaattgttctgttcttgacaacttcttttctttctataaaaatatgtatgta 37584385  T
Q  197 ctcaaataaaaaccaatgtccaattcactttgatacaaaatcatagcaacaaacaagtgcaaatcctattctattatcatcatccaaaattttcaactac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37584386 ctcaaataaaaaccaatgtccaattcactttgatacaaaatcatagcaacaaacaagtgcaaatcctattctattatcatcatccaaaattttcaactac 37584485  T
Q  297 aatcaacaactggattacaaaaataaaattgaagaaactaattcacccaacacaacttataaaggggaaaaactactcaagagaagaaaaaacgccagat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37584486 aatcaacaactggattacaaaaataaaattgaagaaactaattcacccaacacaacttataaaggggaaaaactactcaagagaagaaaaaacgccagat 37584585  T
Q  397 tcacatgcatgagg 410  Q
    ||||||||||||||    
T  37584586 tcacatgcatgagg 37584599  T

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