View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_high_10 (Length: 430)
Name: NF20057_high_10
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 30850392 - 30850797
Alignment:
| Q |
9 |
agcagagaggtacctgaaggtggaagattacaagtaaactgagcgtaaaggagttgaaacttccagtcttagagttattgattttatgtgctttggccca |
108 |
Q |
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| T |
30850392 |
agcagagaggtacctgaaggtggaagattacaagtaaactgagcgtaaaggagttgaaacttccagtcttagagttattgattttatgtgctttggccca |
30850491 |
T |
|
| Q |
109 |
ctccttcacctacacaagccagaaagaatgaatcaaacccaagcaattgttagcccagcccagccacccaagttattgaaacttcagccacaagaacgta |
208 |
Q |
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| T |
30850492 |
ctccttcacctacacaagccagaaagaatgaatcaaacccaagcaattgttagcccagcctagccacccaagttattgaaacttcagccacaagaacgta |
30850591 |
T |
|
| Q |
209 |
ccactacaaccagatcatgaaagcggccatctatcctgttgatccaaagcaagaatttggatttcatcaagcccggcaggttattgatcgaaacatcaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30850592 |
ccactacaaccagatcatgaaagcggccatctatcctgttgatccaaagcaagaatttggatttcatcaagcccggcaggttattgatcgaaacatcaca |
30850691 |
T |
|
| Q |
309 |
agatatgccttgtcggacacttttaaattttagaatgggaactcttgccttggggatgaactgaaagttcatgtatccacctgtaaagcagtgttataac |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30850692 |
agatatgccttgtcggacacttttaaattttagaatgggaactcttgccttggggatgaactgaaagttcatgtacccacctgtaaagcagtgttataac |
30850791 |
T |
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| Q |
409 |
caaatg |
414 |
Q |
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|||||| |
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| T |
30850792 |
caaatg |
30850797 |
T |
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