View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20057_high_13 (Length: 396)
Name: NF20057_high_13
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 1564506 - 1564828
Alignment:
| Q |
13 |
attctcaaccgttcaataacaagtaaaataatattataataataatcaagaaattgattnnnnnnntcagattgtgaagttgacatcaatcttcgttgga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
1564506 |
attctcaaccgttcaataacaagtaaaataatattataataataatcaagaaattgattaaaaaaatcagattgtgaagttgacatcaatcttcattgga |
1564605 |
T |
|
| Q |
113 |
agtagaagtcagctagaatttatggtctaaagaagaatactaccaaacaaaagtttgaaaaagtttatgttattttttatatcatgatggctatttgaga |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1564606 |
agtagaagtctgctagaatttatggtctaaagaagaatactaccaaacaaaagtttgaaaaagtttatgttattttttatatcatgatggctatttgaga |
1564705 |
T |
|
| Q |
213 |
tggtaacatgaccaattcttcaacctattaaattatgcatatgcagagtcaatatcaattacaaagtcctaacttatgatgaaactgatattttaacttt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1564706 |
tggtaacatgaccaattcttcaacctattaaattatgcatatgcagagtcaatatcaattacaaagtcctaactt---atgaaactgatattttaacttt |
1564802 |
T |
|
| Q |
313 |
tcaatagcttctaatagtgacaaaaa |
338 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1564803 |
tcaatagcttctaatagtgacaaaaa |
1564828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University