View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_high_18 (Length: 334)
Name: NF20057_high_18
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 37533578 - 37533769
Alignment:
| Q |
19 |
aagattaatcaacactgaatattgttgaaacttgaaaagcaaaatgaagagataggagacacgaattacaaggtgtgaaaacgaccatggctataataga |
118 |
Q |
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| T |
37533578 |
aagattaatcaacactgaatattgttgaaacttgaaaagcaaaatgaagagataggagacacgaattacaaggtgtgaaaacgaccatggctataataga |
37533677 |
T |
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| Q |
119 |
aaaggaagaatgagagagacctcacagttaatgacnnnnnnnctggggactactaattttgggattgtgattgtcacactcttcttatatac |
210 |
Q |
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| T |
37533678 |
aaaggaagaatgagagagacctcacagttaatgacaaaaaaactggggactactaattttgggattgtgattgtcccactctttttatatac |
37533769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 37534078 - 37534135
Alignment:
| Q |
221 |
cattcacattttcttcacgtttaaggggacttcattttgattgtggaccactactcca |
278 |
Q |
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| T |
37534078 |
cattcacattttcttcacgtttaaggggacttcattttgattgtggaccactactcca |
37534135 |
T |
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