View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_high_20 (Length: 320)
Name: NF20057_high_20
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 20687574 - 20687268
Alignment:
| Q |
1 |
ttaaagattaatgttaaggtaagttgtccagtaaataatctgcatgttccaatgtttttatgtgattgctaccacgttttaaacatttagttcttgattg |
100 |
Q |
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| T |
20687574 |
ttaaagattaatgttaaggtaagttgtccagtaaataatctgcatgttccaatgtttttatgtgattgctaccacgttttaaacatttagttcttgattg |
20687475 |
T |
|
| Q |
101 |
tctaggttggtggtcgtaacaccgtgctgaatgatgcagttatatataatattcccctagtaactgataaaccaactataatatttggagcggatgtaac |
200 |
Q |
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| T |
20687474 |
tctaggttggtggtcgtaacaccgtgctgaatgatgcagttatatataatattcccctagtaactgataaaccaactataatatttggagcggatgtaac |
20687375 |
T |
|
| Q |
201 |
acaccctcatccaggagaagactcaagtccttctatagctgcagtaagc--tgtctttttgcgtacgtatttgcagnnnnnnnatgaaatcatatttata |
298 |
Q |
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| T |
20687374 |
acaccctcatccaggagaagactcaagtccttctatagctgcagtaagctttgtctttttgcgtacttatttgcagtttttttatgaaatcatatttata |
20687275 |
T |
|
| Q |
299 |
tatttgt |
305 |
Q |
| |
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||||||| |
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| T |
20687274 |
tatttgt |
20687268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 20663137 - 20663048
Alignment:
| Q |
161 |
taactgataaaccaactataatatttggagcggatgtaacacaccctcatccaggagaagactcaagtccttctatagctgcagtaagct |
250 |
Q |
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|||||||| |||||| ||||||||||| |||||||||||||| ||||| ||||||||||| || |||||| |||||||||||||||| |
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| T |
20663137 |
taactgatgtaccaacgataatatttggtgcggatgtaacacatcctcagccaggagaagattcgtctccttcaatagctgcagtaagct |
20663048 |
T |
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