View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_high_21 (Length: 319)
Name: NF20057_high_21
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 27644105 - 27644399
Alignment:
| Q |
10 |
aagaaaatcaggctgcttcaaggctttggctaggcttagcccagccattcccgttactccaaccactagtgctacggaatttcgtacattcatcacttca |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644105 |
aagacaatcaggctgcttcaaggctttggctaggcttagcccagccattcccgttactccaaccactagtgctacggaatttcgtacattcatcacttca |
27644204 |
T |
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| Q |
110 |
cagtgctataatggagaaaaaacttagtggcggtgtctgtttatataaaagcattagtgtattgacgggtgattagtgatgttaccttgcagataattat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27644205 |
cagtgctataatggagaaaaaacttagtggcggtgtctgtttatataaaagcattagtgtattgacgggtgattagtgatgttaccttgcaaataattat |
27644304 |
T |
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| Q |
210 |
atcaaaaaataaacaaagtggatggatatactaattgaatctgggtgttttttcctatagaaaattatagattattaatcggtggttgataagat |
304 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644305 |
atcaaaaaataaacaaagtggatggatatgctaattgaatctgggtgttttttcctatagaaaattatagattattaatcggtggttgataagat |
27644399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 50253918 - 50253847
Alignment:
| Q |
15 |
aatcaggctgcttcaaggctttggctaggcttagcccagccattcccgttactccaaccactagtgctacgg |
86 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
50253918 |
aatcaggctgcttcaaggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgg |
50253847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 50246781 - 50246712
Alignment:
| Q |
15 |
aatcaggctgcttcaaggctttggctaggcttagcccagccattcccgttactccaaccactagtgctac |
84 |
Q |
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||||||||||||||||||||| ||||| |||||| ||| |||||||||| ||||| || ||||||||||| |
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| T |
50246781 |
aatcaggctgcttcaaggcttcggctaagcttagtccaaccattcccgtaactccgacaactagtgctac |
50246712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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