View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_high_27 (Length: 263)
Name: NF20057_high_27
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 35358013 - 35358255
Alignment:
| Q |
5 |
gacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagctctcatgagttccgcatcacaatcacca |
104 |
Q |
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| T |
35358013 |
gacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagctctcatgagttccgcatcacaatcacca |
35358112 |
T |
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| Q |
105 |
tttctacttttcaaggctaactcagcaggtgcacaccccattggtcccgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgcattg |
204 |
Q |
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| T |
35358113 |
tttctacttttcaaggctaactcagcaggtgcacaccccattggtcctgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgcatcg |
35358212 |
T |
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| Q |
205 |
atcgttaacgtgtgttaagcattctcataacagtcgaaaactt |
247 |
Q |
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| T |
35358213 |
atcgttaacgtgtgttaagcattctcataacagtcgaatactt |
35358255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 35376591 - 35376787
Alignment:
| Q |
5 |
gacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagctctcatgagttccgcatcacaatcacca |
104 |
Q |
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| T |
35376591 |
gacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagctctcacgagttccacatcacaatcacca |
35376690 |
T |
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| Q |
105 |
tttctacttttcaaggctaactcagcaggtgcacaccccattggtcccgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgca |
201 |
Q |
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| T |
35376691 |
tttctacttctcaaagctaactctgcaggtacacaccccattggtcccgtgcccgttacaagaaccttacgacctcccaaatcataaagtttctgca |
35376787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 35365047 - 35365145
Alignment:
| Q |
5 |
gacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagctctcatgagttccgcatcacaatcacc |
103 |
Q |
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| T |
35365047 |
gacatcagcaccaatctctgtgttgagttctttgatcatttcgacaaattgtcgatcatataaagaggcagcactcacgagttcaacatcacaatcacc |
35365145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 35354323 - 35354372
Alignment:
| Q |
27 |
ttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagc |
76 |
Q |
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| T |
35354323 |
ttgagttctgtgatcaactgaacaagttttggattgtataaggacgcagc |
35354372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 35365186 - 35365246
Alignment:
| Q |
141 |
cccattggtcccgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgca |
201 |
Q |
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| T |
35365186 |
cccattggtcccatgcccattacaagaacattacgacctcccaaatcataaaatttctgca |
35365246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 48084851 - 48084781
Alignment:
| Q |
132 |
ggtgcacaccccattggtcccgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgcat |
202 |
Q |
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| T |
48084851 |
ggtgcacaccccattggtcctgttcccgttacaagaaccctacgagctcccaaatcataaagcctctgcat |
48084781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 48102074 - 48102009
Alignment:
| Q |
136 |
cacaccccattggtcccgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgca |
201 |
Q |
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| T |
48102074 |
cacaccccaatggtccggtgcctgtcacaagaactctacgagctcctatatcatatagtctctgca |
48102009 |
T |
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