View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20057_high_6 (Length: 513)
Name: NF20057_high_6
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_high_6 |
 | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 258 - 496
Target Start/End: Complemental strand, 48883707 - 48883469
Alignment:
| Q |
258 |
gctacacagtgagaagaagcttaagcgagaaggggcaaattgtaccaaaaccctttctccataaaccctaatttttcatttctcaaccacaatggaacac |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48883707 |
gctacacagtgagaagaagcttaagcgagaaggggcaaattgtaccaaaaccctttctccataaaccctaatttttcatttctcaaccacaatggaacac |
48883608 |
T |
|
| Q |
358 |
ataggttcaagcaaagatgctaacaacaccaactacacagaaatggacattgaccttgacgacgatgaagatcaatccaacgccgaaatcctcaacgaac |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48883607 |
ataggttcaagcaaagatgctaacaacaccaactacacagaaatggacattgaccttgacgacgatgaagatcaatccaacgccgaaatcctcaacgaac |
48883508 |
T |
|
| Q |
458 |
tcggcgacgatatggtcaaatacttttgcaagaaagctt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48883507 |
tcggcgacgatatggtcaaatacttttgcaagaaagctt |
48883469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 48883941 - 48883750
Alignment:
| Q |
15 |
atgaagcaataaacggcagtgggaagaagaactttgggagactgtaattaggagtaacgctttaccatatacaccccctataaagtattaatattaccnn |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48883941 |
atgaagcaataaacggcagtgggaagaagaactttgggagactgtaattaggagtaacgctttaccatatacaccccctataaagtattaatattaccaa |
48883842 |
T |
|
| Q |
115 |
nnnnntgctgattattattgaacaacacgagtagtactgtaacactacactacactacacatttccgcaaaaactcaaaaggtttttggcgtttcaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48883841 |
aaaaatgctgattattattgaacaacacgagtagtactgta-----acactacactacacatttccgcaaaaactcaaaaggtttttggcgtttcaa |
48883750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 294 - 488
Target Start/End: Original strand, 30025 - 30211
Alignment:
| Q |
294 |
aaattgtaccaaaaccctttctccataaaccctaatttttcatttctcaaccacaatggaa---cacataggttcaagcaaagatgctaacaacaccaac |
390 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||| || || | ||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
30025 |
aaattgtaccaaaatcctttctccataaaccctaattttccatctccttacta--atggaggatcacataggttcaagcaaagacgctaacatc------ |
30116 |
T |
|
| Q |
391 |
tacacagaaatggacattgaccttgacgacgatgaagatcaatccaacgccgaaatcctcaacgaactcggcgacgatatggtcaaatacttttgcaa |
488 |
Q |
| |
|
||||| ||||||||||| ||||| | |||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
30117 |
tacactgaaatggacatcgacct---caacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaa |
30211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University