View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_high_9 (Length: 434)
Name: NF20057_high_9
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 5 - 418
Target Start/End: Original strand, 7088571 - 7088984
Alignment:
| Q |
5 |
atcaggcatttgtcccgtgaatgaattatgcgagagatcgatgaaccttattgaactaatgttgacaaaagaaagaggtaatggaccagaaaatgagttg |
104 |
Q |
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| T |
7088571 |
atcaggcatttgtcccgcgaacgaattatgcgagagatcaatgaaccttattgaactcatgttgacaaaagaaagaggtaatggaccagaaaatgagttg |
7088670 |
T |
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| Q |
105 |
tgactaaggtttagtttttgaagagtgttggaaagtgtaagtgaaggactaatagttccactgaaattgttgtgtgaaagtgataatgttactaaatgtt |
204 |
Q |
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| T |
7088671 |
tgactaaggtttagtttttgaagagtgttggaaagtgtaagtgaaggactaatagttccactgaaattgttgtgtgaaagtgataatgttactaaatgtt |
7088770 |
T |
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| Q |
205 |
gcaatttttcaagacttcttcctaatttacctgataagcctaaaccatctaaggaaagttctgagactctttgagtttgtggattgcatttcacatattg |
304 |
Q |
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| T |
7088771 |
gcaatttttcaagacttcttcctaatttacctgataagcctaaaccatctaaggaaagttctgagactctttgagtttgtggattgcatttcacatattg |
7088870 |
T |
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| Q |
305 |
ccatgaacatggattgatatcatcttcattccatgaagaaaggtaagatgaagggtcttggaggtctgatttgaacacaattaaaccgaggacgtcgtcg |
404 |
Q |
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| T |
7088871 |
ccatgaacatggattgatatcatcttcattccatgaagaaaggtaagatgaagggtcttggaggtctgatttgaacacaattaaaccgaggacgtcgtcg |
7088970 |
T |
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| Q |
405 |
tttaactgaatcgt |
418 |
Q |
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| T |
7088971 |
tttaactgaatcgt |
7088984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 7076091 - 7076157
Alignment:
| Q |
349 |
aagatgaagggtcttggaggtctgatttgaacacaattaaaccgaggacgtcgtcgtttaactgaat |
415 |
Q |
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| T |
7076091 |
aagataaagggttatgaaggtctgatttgaacacaattaagccgaggacgtcgtcgtttaactgaat |
7076157 |
T |
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