View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20057_low_1 (Length: 737)

Name: NF20057_low_1
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20057_low_1
NF20057_low_1
[»] chr1 (9 HSPs)
chr1 (18-699)||(9168255-9168927)
chr1 (131-317)||(28664975-28665163)
chr1 (186-317)||(15629325-15629458)
chr1 (181-317)||(15630119-15630257)
chr1 (131-317)||(6696015-6696199)
chr1 (238-318)||(2071561-2071642)
chr1 (220-317)||(2073379-2073479)
chr1 (220-317)||(2076911-2077011)
chr1 (246-318)||(2075099-2075172)
[»] chr3 (10 HSPs)
chr3 (131-317)||(18088060-18088244)
chr3 (131-317)||(42531289-42531475)
chr3 (186-317)||(50294658-50294787)
chr3 (139-269)||(30057133-30057263)
chr3 (220-317)||(46691463-46691559)
chr3 (220-317)||(50297460-50297557)
chr3 (175-317)||(814354-814498)
chr3 (233-316)||(16462968-16463050)
chr3 (227-317)||(42530590-42530679)
chr3 (227-317)||(814260-814349)
[»] chr7 (14 HSPs)
chr7 (131-295)||(6840532-6840695)
chr7 (148-317)||(15614192-15614361)
chr7 (123-317)||(46964337-46964529)
chr7 (131-317)||(2628168-2628354)
chr7 (131-317)||(46962991-46963175)
chr7 (233-316)||(21814428-21814510)
chr7 (182-244)||(5763704-5763766)
chr7 (188-271)||(44337393-44337476)
chr7 (131-169)||(22554693-22554731)
chr7 (223-317)||(44339050-44339144)
chr7 (241-317)||(6841471-6841547)
chr7 (191-317)||(30867102-30867229)
chr7 (148-257)||(39349344-39349454)
chr7 (248-317)||(21811668-21811737)
[»] chr4 (8 HSPs)
chr4 (135-317)||(16543360-16543542)
chr4 (131-317)||(16871651-16871835)
chr4 (124-317)||(54146612-54146800)
chr4 (123-310)||(16869513-16869702)
chr4 (175-320)||(14458536-14458681)
chr4 (175-268)||(24131825-24131918)
chr4 (131-320)||(54148272-54148454)
chr4 (143-282)||(37945519-37945655)
[»] chr2 (9 HSPs)
chr2 (123-318)||(8985573-8985766)
chr2 (178-317)||(32291155-32291294)
chr2 (150-317)||(8986927-8987092)
chr2 (131-213)||(29408968-29409050)
chr2 (244-318)||(29409109-29409183)
chr2 (245-317)||(32276940-32277011)
chr2 (206-317)||(38583491-38583602)
chr2 (181-320)||(1172740-1172878)
chr2 (220-269)||(38588212-38588261)
[»] scaffold0511 (1 HSPs)
scaffold0511 (125-317)||(11187-11377)
[»] chr6 (13 HSPs)
chr6 (125-317)||(18792764-18792954)
chr6 (131-316)||(33423902-33424087)
chr6 (135-317)||(21862689-21862869)
chr6 (150-279)||(22868499-22868628)
chr6 (123-317)||(10740574-10740762)
chr6 (182-317)||(18984497-18984632)
chr6 (131-288)||(9290584-9290736)
chr6 (188-317)||(10741772-10741901)
chr6 (182-268)||(13166484-13166569)
chr6 (184-256)||(9365085-9365156)
chr6 (129-179)||(9363118-9363168)
chr6 (123-165)||(21858191-21858233)
chr6 (284-317)||(21858039-21858072)
[»] chr5 (6 HSPs)
chr5 (151-315)||(11343870-11344032)
chr5 (131-315)||(24137600-24137784)
chr5 (113-168)||(28432144-28432199)
chr5 (220-318)||(11320489-11320586)
chr5 (200-315)||(40784160-40784275)
chr5 (131-250)||(6643430-6643547)
[»] chr8 (10 HSPs)
chr8 (120-314)||(33199412-33199604)
chr8 (130-277)||(44374651-44374797)
chr8 (230-317)||(43615458-43615545)
chr8 (188-271)||(20241071-20241154)
chr8 (188-271)||(20251913-20251996)
chr8 (223-317)||(20242727-20242821)
chr8 (223-317)||(20250339-20250433)
chr8 (135-257)||(43516186-43516305)
chr8 (175-320)||(16578749-16578896)
chr8 (130-216)||(14699336-14699422)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-317)||(406215-406356)
[»] scaffold0325 (1 HSPs)
scaffold0325 (220-318)||(14540-14639)


Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 699
Target Start/End: Original strand, 9168255 - 9168927
Alignment:
Q  18 aaagggggagaagtgcaatgcaatccatcagaagaatnnnnnnnnngggagaagtgcaatgagtcagaagaaataatagggggagaagtgcaatcaacta 117  Q
    |||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168255 aaagggggggaagtgcaatgcaatccatcagaagaattaaaaaaaggggagaagtgcaatgagtcagaagaaataatagggggagaagtgcaatcaacta 9168354  T
Q  118 ggctctgataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgata 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168355 ggctctgataccatgttaacaatacatatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgata 9168454  T
Q  218 tcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9168455 tcacaaaatgttataagagaatatataataaaac---------tgtaacttactgatataaaggttcaatagcttaagtgcaatactttattatctaaca 9168545  T
Q  318 catttttgaattggtcatttgtgccttctgttgaaattgaaaacattctcgtccttaataagccagaagatcaattgacagatgctaaatctaagaaagt 417  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168546 cctttttgaattggtcatttgtgccttctattgaaattgaaaacattcccgtccttaataagccagaagatcaattgacagatgctaaatctaagaaagt 9168645  T
Q  418 tcaatatgatatgaaggtgtgaaacatactcattgcttcccttggaatcaagagtactatcgttcctcgcatggagataatgctaaagcgatttaggata 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9168646 tcaatatgatatgaaggtgtgaaacatactcattgcttcccttggaatcaagagtactatcgttcctcacatggagataatgctaaagcgatttaggata 9168745  T
Q  518 cctttcaagtcatccacaaggagacaattgtggtaaaacaatcgaagataaatacacttgttcaaagatatgagctctttcgtatgatgcacaatgaaat 617  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168746 ccttacaagtcatccacaaggagacaattgtggtaaaacaatcgaagataaatacacttgttcaaagatatgagctctttcgtatgatgcacaatgaaat 9168845  T
Q  618 tgtttgcagatttgcaaaagagattttctcacggtgtgaataagcttgctagacttcgtgaaaccatacctaatgctaacaa 699  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9168846 tgtttgcagatttgcaaaagagattttctcatggtgtgaataagcttgctagacttcgtgaaaccttacctaatgctaacaa 9168927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 131 - 317
Target Start/End: Complemental strand, 28665163 - 28664975
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttca-taaaatatcaataacttgatatcacaaaatgtt 229  Q
    |||||| |||||||||||||||| ||||||||||||||| |   ||||| |||||||||||||||| || |||| ||||| ||| |||| ||||||||||    
T  28665163 tgttaagaatacagatacaaaatggagaaagagagaatagg---aacaacgacggctagggtttcattagaataacaatagcttaatattacaaaatgtt 28665067  T
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatataaaggt----tc-aatagcttaagcgcaatactttattatctaaca 317  Q
    || |||||||||||||| |||||||||| ||| ||||||||| ||||||||||    || ||||| |||||| ||||||||||||||||||||    
T  28665066 atgagagaatatataat-aaacctaatggactctaacttactaatataaaggtctaatctaatagtttaagctcaatactttattatctaaca 28664975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 15629325 - 15629458
Alignment:
Q  186 ctagggtttcataaaatat--caataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggtt 283  Q
    |||||||||||||||||||  ||||| ||| |||| |||||| |||||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||     
T  15629325 ctagggtttcataaaatatttcaatagcttaatattacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatataaaggtc 15629424  T
Q  284 caatagcttaagcgcaatactttattatctaaca 317  Q
    ||||| ||||||| ||||| ||||||||||||||    
T  15629425 caataacttaagcccaatattttattatctaaca 15629458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 181 - 317
Target Start/End: Original strand, 15630119 - 15630257
Alignment:
Q  181 gacggctagggtttcataaaatat--caataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataa 278  Q
    ||||||||||||||||||||||||  ||||||||| ||||  ||||| ||||||||||||||||||||||||||||||  ||| ||||||||| ||||||    
T  15630119 gacggctagggtttcataaaatatttcaataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaacttactaatataa 15630218  T
Q  279 aggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||  |||||  |||||| |||||||||||||| |||||    
T  15630219 aggcccaataatttaagctcaatactttattatttaaca 15630257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 131 - 317
Target Start/End: Complemental strand, 6696199 - 6696015
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaa-tatcaataacttgatatcacaaaatgtt 229  Q
    ||||||||||||||||| ||||| ||||||||||||||| || ||||   |||||||| | |||||| | | || ||||| ||| | || |||||| |||    
T  6696199 tgttaacaatacagatataaaatggagaaagagagaataggaacaac---gacggctacgatttcattagactaacaatagcttaacattacaaaaggtt 6696103  T
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||||||||| |||||||| |||||| ||| ||||||||| ||||||| |  ||||| |||||||  |||||||||||||||||||    
T  6696102 ataagagaatatttaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaaca 6696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 2071561 - 2071642
Alignment:
Q  238 atatataataaaacctaatgtacta-taacttactgatataaaggttcaatagcttaagcgcaatactttattatctaacac 318  Q
    ||||||| |||||||||||| |||  ||||||||| |||| ||||  ||||||||||||| ||||| |||||||||||||||    
T  2071561 atatatactaaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaacac 2071642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 2073379 - 2073479
Alignment:
Q  220 acaaaatgttataagagaatatataa--taaaacctaatgtacta-taacttactgatataaaggttcaatagcttaagcgcaatactttattatctaac 316  Q
    |||||| ||||||||||||||||||   |||||||||||| |||  ||||||||| |||| ||||   |||||||||||| ||||| |||||||||||||    
T  2073379 acaaaaagttataagagaatatatatactaaaacctaatggactgctaacttactaatattaaggactaatagcttaagcccaatattttattatctaac 2073478  T
Q  317 a 317  Q
    |    
T  2073479 a 2073479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 2076911 - 2077011
Alignment:
Q  220 acaaaatgttataagagaatatataa--taaaacctaatgtacta-taacttactgatataaaggttcaatagcttaagcgcaatactttattatctaac 316  Q
    |||||| ||||||||||||||||||   |||||||||||| |||  ||||||||| |||| ||||   |||||||||||| ||||| |||||||||||||    
T  2076911 acaaaaagttataagagaatatatatactaaaacctaatggactgctaacttactaatattaaggactaatagcttaagcccaatattttattatctaac 2077010  T
Q  317 a 317  Q
    |    
T  2077011 a 2077011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 2075099 - 2075172
Alignment:
Q  246 taaaacctaatgtacta-taacttactgatataaaggttcaatagcttaagcgcaatactttattatctaacac 318  Q
    |||||||||||| |||  ||||||||| |||| ||||  ||||||||||||| ||||| |||||||||||||||    
T  2075099 taaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaacac 2075172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 131 - 317
Target Start/End: Original strand, 18088060 - 18088244
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgtta 230  Q
    |||||| |||||  ||||||||||||||||||||||||| |   |||||| ||||||||||||||||| ||| |||||| |||| ||| |||||||||||    
T  18088060 tgttaaaaataccaatacaaaatagagaaagagagaatagggaaaacaaa-acggctagggtttcatagaatgtcaatagcttgctattacaaaatgtta 18088158  T
Q  231 taagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    | |||||||||||||| |||||||||| ||| ||||||||| |||||||||   |||||||||||| ||||||||||||||| ||||    
T  18088159 tgagagaatatataat-aaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatccaaca 18088244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 131 - 317
Target Start/End: Complemental strand, 42531475 - 42531289
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgtta 230  Q
    ||||||||| |||||||||||||  ||||||||| |||  ||  ||||| |  ||||||||||||||| |||||||||  ||| | || |||||| ||||    
T  42531475 tgttaacaaaacagatacaaaatcaagaaagagaaaatgagaataacaacggaggctagggtttcatacaatatcaatggcttaacattacaaaaggtta 42531376  T
Q  231 taagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||||| || ||||| || |||| |||| |||||||||||||||    
T  42531375 taagagaatatataataaaacctaatgaactttaacttactaatataaaagtccaataactcaagcccaatcctttattatctaaca 42531289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 50294787 - 50294658
Alignment:
Q  186 ctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttca 285  Q
    ||||||||||  | ||||| ||| |||| |||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||| | ||||||||| |||    
T  50294787 ctagggtttccaataatattaattacttaatattacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaagg-tca 50294689  T
Q  286 atagcttaagcgcaatactttattatctaaca 317  Q
    ||| ||||||| ||||||||||| ||||||||    
T  50294688 ataacttaagc-caatactttatcatctaaca 50294658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 30057263 - 30057133
Alignment:
Q  139 atacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaa 238  Q
    ||||| |||||||||||||||  ||||||||||| ||||||||||| ||||| ||||| | || ||||||| ||| | || ||||||  |||||||||||    
T  30057263 atacaaatacaaaatagagaacaagagaatatgaacaacaaagacgactaggatttcagagaacatcaatagcttaacattacaaaagattataagagaa 30057164  T
Q  239 tatataataaaacctaatgtactataactta 269  Q
    ||||||| |||| |||||| ||| |||||||    
T  30057163 tatataacaaaatctaatggactctaactta 30057133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 46691463 - 46691559
Alignment:
Q  220 acaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| |||||||||  ||||||||| ||||| ||||||  ||||||||||||||||||||    
T  46691463 acaaaaggttataagagaatatataataaaac-taatggactctaacttactagtataaaggtccaataacttaagttcaatactttattatctaaca 46691559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 50297557 - 50297460
Alignment:
Q  220 acaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||| |||||||| ||| |||||||||||| ||||| ||| ||||||||| ||||||||  |||||| ||||||| ||||||||||||||||||||    
T  50297557 acaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatataaagactcaataacttaagcacaatactttattatctaaca 50297460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 175 - 317
Target Start/End: Original strand, 814354 - 814498
Alignment:
Q  175 aacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataata--aaacctaatgtactataacttactg 272  Q
    ||||||||| ||||| |||||||| |||| ||||| ||| | || |||| | ||||||||||||||||||  |  |||||||||| ||| |||||||||     
T  814354 aacaaagacagctagagtttcatagaataccaatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttacta 814453  T
Q  273 atataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||| |  ||||| ||||||  ||||||||||||||||||||    
T  814454 atataaatgcccaataacttaagtccaatactttattatctaaca 814498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 16463050 - 16462968
Alignment:
Q  233 agagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaac 316  Q
    ||||||||||||||||| ||||||| ||| ||||||||| ||||||||| | |||| ||||||| |||||||||||||||||||    
T  16463050 agagaatatataataaa-cctaatggactctaacttactaatataaaggcttaatatcttaagctcaatactttattatctaac 16462968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 42530679 - 42530590
Alignment:
Q  227 gttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||| | ||| || || |||  ||||||||||||||||||||    
T  42530679 gttataagagaatatataataaaacctaatgaactttaatttactaatataaaag-tcactaactcaagtccaatactttattatctaaca 42530590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 814349 - 814260
Alignment:
Q  227 gttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||||||||||||| ||  |||||||||| ||| ||||||||| ||||||| |  ||||| ||||||  ||||||||||||||||||||    
T  814349 gttataagagaatata-aacgaaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattatctaaca 814260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 131 - 295
Target Start/End: Original strand, 6840532 - 6840695
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgtta 230  Q
    ||||||||||| |||||||||||||||||| ||||||||| |  ||||||||||| || |||||||||||||||||||| ||| | || |||||| ||||    
T  6840532 tgttaacaatatagatacaaaatagagaaacagagaatataag-aacaaagacggttatggtttcataaaatatcaatagctttacattacaaaaggtta 6840630  T
Q  231 taagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaag 295  Q
    ||| ||||||||||||||||||||| | ||| |||||||||||||||||||  ||||| ||||||    
T  6840631 taaaagaatatataataaaacctaacggactctaacttactgatataaaggcccaataacttaag 6840695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 148 - 317
Target Start/End: Original strand, 15614192 - 15614361
Alignment:
Q  148 caaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataata 247  Q
    ||||||||||||||||| |||   | | | ||||||  ||||||||||||| |||| ||||| ||| |||| |||||| ||||||| |||||||||||||    
T  15614192 caaaatagagaaagagataatcaaaacgataaagacaactagggtttcatagaataacaatagcttaatattacaaaaggttataaaagaatatataata 15614291  T
Q  248 aaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||||||| ||| |||||| || |||||||||| ||||| ||||||| ||||||||||||||||||||    
T  15614292 aaacctaatggactctaacttgctaatataaaggtccaataacttaagcccaatactttattatctaaca 15614361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 123 - 317
Target Start/End: Original strand, 46964337 - 46964529
Alignment:
Q  123 tgataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaa-tatcaataacttgatatcac 221  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||   |||||||| | |||||| | | || ||||| ||| |||| ||    
T  46964337 tgataccatgttaacaatacagatataaaatggagaaagagagaataggaacaac---gacggctacgatttcattagactaacaatagcttaatattac 46964433  T
Q  222 aaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||| |||||||||||||||||||||||| |||||| ||| |||| |||| ||||||| |  ||||| |||||||  ||| |||||||||||||||    
T  46964434 aaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatgcccaataacttaagcctaatcctttattatctaaca 46964529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 131 - 317
Target Start/End: Original strand, 2628168 - 2628354
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgtta 230  Q
    ||||||||| |||||||||||||  | ||||||| |||  ||  ||||| |  || |||||||||||| ||||||||||  || | || ||||||  |||    
T  2628168 tgttaacaaaacagatacaaaatcaaaaaagagaaaatgagaataacaacggaggttagggtttcatataatatcaatagtttaacattacaaaaaatta 2628267  T
Q  231 taagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    | ||||||||||||||||||||||||| ||| ||||||||| ||||||||  |||||| ||||||| ||||||||||||||||||||    
T  2628268 tgagagaatatataataaaacctaatggactctaacttactaatataaagactcaataacttaagctcaatactttattatctaaca 2628354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 131 - 317
Target Start/End: Original strand, 46962991 - 46963175
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataa-aatatcaataacttgatatcacaaaatgtt 229  Q
    ||||||||||||||||| ||||| ||||||||||||||| || ||||   |||||||| | |||||| | |||| ||||| ||| | || |||||| |||    
T  46962991 tgttaacaatacagatataaaatggagaaagagagaataggaacaac---gacggctacgatttcattataataacaatagcttaacattacaaaaggtt 46963087  T
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||||||||| |||||||| |||||| ||| ||||||||| ||||||| |  ||||| |||||||  |||||||||||||||||||    
T  46963088 ataagagaatatctaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaaca 46963175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 21814510 - 21814428
Alignment:
Q  233 agagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaac 316  Q
    ||||||||||||||||| ||||||| ||| ||||||||| ||||||||| | |||| ||||||| |||||||||||||||||||    
T  21814510 agagaatatataataaa-cctaatggactctaacttactaatataaaggcttaatatcttaagctcaatactttattatctaac 21814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 5763766 - 5763704
Alignment:
Q  182 acggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatata 244  Q
    |||||| |||| |||||||||||||||| ||| |||| ||||||||||| |||||||||||||    
T  5763766 acggcttgggtgtcataaaatatcaatatcttaatattacaaaatgttacaagagaatatata 5763704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 44337476 - 44337393
Alignment:
Q  188 agggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttact 271  Q
    |||||||||||||||| ||||| | |   || || |||||||||||||||||||||||||||| |||| | ||| |||||||||    
T  44337476 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataaaatctaacggactctaacttact 44337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 22554693 - 22554731
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaata 169  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  22554693 tgttaacaatacagatacaaaatagacaaagagagaata 22554731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 44339144 - 44339050
Alignment:
Q  223 aaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||| ||||||||||||||||  |||   ||| ||||||||| |||||||||| ||||| |||||   ||||| |||||||| |||||    
T  44339144 aaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaaca 44339050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 6841471 - 6841547
Alignment:
Q  241 tataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||||||| |||| | ||| |||||||||||||||||||  ||||| ||||||  | ||| ||||||||||||||    
T  6841471 tataataaaatctaacggactctaacttactgatataaaggcccaataacttaagtccgatattttattatctaaca 6841547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 191 - 317
Target Start/End: Complemental strand, 30867229 - 30867102
Alignment:
Q  191 gtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtacta---taacttactgatataaaggttcaat 287  Q
    |||| ||| |||||||||||||| |||| |||||| || | |||||||||||||   |||||||||| ||||   ||||| | | ||| ||||| || ||    
T  30867229 gttttatagaatatcaataacttaatattacaaaaagtcacaagagaatatata--gaaacctaatgaactatattaactaagtaatacaaagggtcgat 30867132  T
Q  288 agcttaagcgcaatactttattatctaaca 317  Q
    || |||||  ||||||||||||||||||||    
T  30867131 agtttaaggtcaatactttattatctaaca 30867102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 39349344 - 39349454
Alignment:
Q  148 caaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatata-at 246  Q
    ||||||| | |||||||||||  || |||||| |  ||| ||||||||||| |||| || |||||||| || |||||| |||| | ||||||||||| ||    
T  39349344 caaaataaataaagagagaatgggaacaacaatggaggcaagggtttcatagaatagcattaacttgacattacaaaaggttacaggagaatatatatat 39349443  T
Q  247 aaaacctaatg 257  Q
    ||| |||||||    
T  39349444 aaatcctaatg 39349454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 21811737 - 21811668
Alignment:
Q  248 aaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||||||  ||| ||||||||| |||||||||   |||||||||| | |||||| |||||||||||||    
T  21811737 aaacctaattgactctaacttactaatataaaggcctaatagcttaaacccaatacattattatctaaca 21811668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 135 - 317
Target Start/End: Complemental strand, 16543542 - 16543360
Alignment:
Q  135 aacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataag 234  Q
    ||||| ||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||| | ||  ||||| |||| | |    
T  16543542 aacaaaacaaatacaaattagagaaagagacaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatg 16543443  T
Q  235 agaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||||| |  ||||| ||||||  || |||||||||||||||||    
T  16543442 agaatatataataaaacttaatgaactctaacttactaatataaaaggccaataacttaagtccattactttattatctaaca 16543360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 131 - 317
Target Start/End: Complemental strand, 16871835 - 16871651
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaa-tatcaataacttgatatcacaaaatgtt 229  Q
    ||||||||||||||||||||||| ||||||||||||| | || ||||   ||||||||||||||||| | | || ||||| ||| | || |||||| |||    
T  16871835 tgttaacaatacagatacaaaatggagaaagagagaacaagaacaac---gacggctagggtttcattagactaacaatagcttaacattacaaaaggtt 16871739  T
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||| |||||||||||||| |||||| ||| ||||||||| ||||||| |  ||||| |||||||  |||||||||||||||||||    
T  16871738 ataagataatatataataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaaca 16871651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 124 - 317
Target Start/End: Complemental strand, 54146800 - 54146612
Alignment:
Q  124 gataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcat-aaaatatcaataacttgatatcaca 222  Q
    |||| |||||||||||||||  |||||||||| |||||| |||  |    ||||||||||||||||| |||||| |||||||||||| ||| |||| |||    
T  54146800 gatatcatgttaacaataca--tacaaaatagggaaagatagataa----caacaaagacggctagg-tttcattaaaatatcaatagcttaatattaca 54146708  T
Q  223 aaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttc--aatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||| ||||||||||| || ||| |||||| ||| ||||||||| |||||||||  |  ||||| ||||||  |||||||||||||||||||    
T  54146707 aaatgttatgagagaatatatgat-aaatctaatggactctaacttactaatataaaggcgcctaatagtttaagcttaatactttattatctaaca 54146612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 123 - 310
Target Start/End: Complemental strand, 16869702 - 16869513
Alignment:
Q  123 tgataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataa-aatatcaataacttgatatcac 221  Q
    ||||||||||||||||||||||||| || || ||||||||||||||| || ||||   |||||||| | |||||| | |||| ||||| ||| |  | ||    
T  16869702 tgataccatgttaacaatacagatataacatggagaaagagagaataggaacaac---gacggctacgatttcattataataacaatagcttaacgttac 16869606  T
Q  222 aa----aatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttatta 310  Q
    ||    || ||||||||||| |||||||||||| |||||| ||| ||||||||| ||||||| |  ||||| ||||||| |||||||||||||    
T  16869605 aacaaaaaagttataagagagtatataataaaatctaatgaactctaacttactaatataaaagcccaataacttaagctcaatactttatta 16869513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 175 - 320
Target Start/End: Complemental strand, 14458681 - 14458536
Alignment:
Q  175 aacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtacta-taacttactga 273  Q
    |||||||||||| ||||||||||| ||   ||||||||| ||||||||||| |||| |||||||| ||| ||||||||||||  |||| ||||||| | |    
T  14458681 aacaaagacggcaagggtttcatagaaatccaataacttaatatcacaaaaggttacaagagaatgtat-ataaaacctaatagactactaacttagtaa 14458583  T
Q  274 tataaaggttcaatagcttaagcgcaatactttattatctaacacat 320  Q
    |||||||   ||||||||||||| |||| | |||| |||||||||||    
T  14458582 tataaagacacaatagcttaagcccaattccttatgatctaacacat 14458536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 24131918 - 24131825
Alignment:
Q  175 aacaaagacggctagggtttcat-aaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataactt 268  Q
    |||||||||| |||||||||||| ||||||| ||| | || | || ||||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  24131918 aacaaagacgactagggtttcattaaaatat-aatgatttaacattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 320
Target Start/End: Complemental strand, 54148454 - 54148272
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcat-aaaatatcaataacttgatatcacaaaatgtt 229  Q
    |||||||||||||  ||||||||||||||||| |||  |    |||| |||||||| ||| |||| | |||||||||||| ||| |||  ||||| ||||    
T  54148454 tgttaacaataca--tacaaaatagagaaagatagataa----caacgaagacggccaggatttcgttaaaatatcaatagcttaataatacaaa-tgtt 54148362  T
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaacacat 320  Q
    || ||||||||||||||||| | || || ||| ||||||||| ||||||| |   |||||||||||| |||| |||| |||||||||||||    
T  54148361 atgagagaatatataataaatc-tattggactctaacttactaatataaaagcctaatagcttaagctcaatgctttgttatctaacacat 54148272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 282
Target Start/End: Complemental strand, 37945655 - 37945519
Alignment:
Q  143 agatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcat-aaaatatcaataacttgatatcacaaaatgttataagagaatat 241  Q
    |||||||||||| |||||||||||  |    ||| || ||| ||||| ||||||| |||||||||||   || | || |||||| |||||||||||||||    
T  37945655 agatacaaaataaagaaagagagataa----caagaacgacagctagagtttcattaaaatatcaattgattaacattacaaaaggttataagagaatat 37945560  T
Q  242 ataataaaacctaatgtactataacttactgatataaaggt 282  Q
    |||||||||  ||||| ||| ||||||||| ||||||||||    
T  37945559 ataataaaatttaatggactctaacttactaatataaaggt 37945519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 123 - 318
Target Start/End: Complemental strand, 8985766 - 8985573
Alignment:
Q  123 tgataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaa-tatcaataacttgatatcac 221  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||   |||||||| | |||||| | | || ||||| ||| | || ||    
T  8985766 tgataccatgttaacaatacagatataaaatggagaaagagagaataggaacaac---gacggctacgatttcattagactaacaatagcttaacattac 8985670  T
Q  222 aaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaacac 318  Q
    |||| |||||||||||||||||||||||| |||||| ||| ||||||||| ||||||| || ||||| |||||||  ||||||||||||||||||||    
T  8985669 aaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatgtccaataacttaagcctaatactttattatctaacac 8985573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 178 - 317
Target Start/End: Complemental strand, 32291294 - 32291155
Alignment:
Q  178 aaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatata 277  Q
    ||||||||||| ||||||||| |||||||||  |||   || |||||| ||||||||||||||||||||||| | ||||| ||| ||||||||| |||||    
T  32291294 aaagacggctatggtttcatagaatatcaattgcttttcattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatata 32291195  T
Q  278 aaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||   ||||| ||||||| ||||||||||||||||||||    
T  32291194 aagacacaataacttaagctcaatactttattatctaaca 32291155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 150 - 317
Target Start/End: Complemental strand, 8987092 - 8986927
Alignment:
Q  150 aaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaa-tatcaataacttgatatcacaaaatgttataagagaatatataataa 248  Q
    |||| ||||||||||||||| || ||||   |||||||| | |||||| | | || ||||| ||| | || |||||| ||||||||||||||||||||||    
T  8987092 aaatggagaaagagagaataggaacaac---gacggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataa 8986996  T
Q  249 aacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||  ||||| ||| ||||||||| ||||||| |  ||||| |||||||  |||||||||||||||||||    
T  8986995 aatttaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaaca 8986927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 29408968 - 29409050
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataactt 213  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||  ||| ||||||| ||||  ||||||||    
T  29408968 tgttaacaatacatatacaaaatagagaaagagagaataagaacaacaaagacggtcaggatttcatagaataataataactt 29409050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 29409109 - 29409183
Alignment:
Q  244 aataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaacac 318  Q
    |||||||  ||||| ||| ||||||||| | ||||| | |||||||||||||| |||||||||||||||||||||    
T  29409109 aataaaatttaatggactctaacttactaaaataaatgctcaatagcttaagcacaatactttattatctaacac 29409183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 32277011 - 32276940
Alignment:
Q  245 ataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||||| ||| ||||||||| |||||||||| ||||| ||||||| |||||| | |||||||||||    
T  32277011 ataaaacctaatggactctaacttactaatataaaggtccaataacttaagctcaatac-taattatctaaca 32276940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 38583491 - 38583602
Alignment:
Q  206 aataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactt 305  Q
    ||||| |||| || |||||| |||||||| ||||||||||||||| |||| |   | ||||||||| |||||||||  |||||  ||||||  |||| ||    
T  38583491 aataaattgacattacaaaaggttataagcgaatatataataaaatctaacgggttctaacttactaatataaaggcccaataatttaagcctaatattt 38583590  T
Q  306 tattatctaaca 317  Q
    ||||||||||||    
T  38583591 tattatctaaca 38583602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 320
Target Start/End: Original strand, 1172740 - 1172878
Alignment:
Q  181 gacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaag 280  Q
    ||||| |||||||||||| ||||  ||||  |  |||| | |||||||||| ||||||||||||||||| |  |||| ||| ||| ||| | |||| |||    
T  1172740 gacggttagggtttcatagaatactaatagatcaatattataaaatgttatgagagaatatataataaatcg-aatggactctaatttattaatattaag 1172838  T
Q  281 gttcaatagcttaagcgcaatactttattatctaacacat 320  Q
    |   ||||| |||||  |||||||||||||||||||||||    
T  1172839 gcctaatagtttaagtacaatactttattatctaacacat 1172878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 38588212 - 38588261
Alignment:
Q  220 acaaaatgttataagagaatatataataaaacctaatgtactataactta 269  Q
    |||||| ||||||||| |||||||||||||||||||  |||| |||||||    
T  38588212 acaaaaggttataagaaaatatataataaaacctaacctactctaactta 38588261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 125 - 317
Target Start/End: Complemental strand, 11377 - 11187
Alignment:
Q  125 ataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaa 224  Q
    |||| |||||||||||| ||||||||||||||||||||||  |||  | ||||||| |||||||| |||||||||||||||||||  || | || |||||    
T  11377 atacaatgttaacaatatagatacaaaatagagaaagaga--ataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaa 11280  T
Q  225 atgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    | |||||||||||||||| |||||||| ||||| ||| ||||||||| |||||  || |||||| || |||| ||||| ||||||||||||||    
T  11279 aggttataagagaatatacaataaaacttaatgcactttaacttactaatatattggctcaataactgaagcccaatagtttattatctaaca 11187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 125 - 317
Target Start/End: Original strand, 18792764 - 18792954
Alignment:
Q  125 ataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaa 224  Q
    |||| |||||||||||| ||||||||||||||||||||||  |||  | ||||||| |||||||| |||||||||||||||||||  || | || |||||    
T  18792764 atacaatgttaacaatatagatacaaaatagagaaagaga--ataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaa 18792861  T
Q  225 atgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    | |||||||||||||||| |||||||| ||||| ||| ||||||||| |||||  || |||||| || |||| ||||| ||||||||||||||    
T  18792862 aggttataagagaatatacaataaaacttaatgcactttaacttactaatatattggctcaataactgaagcccaatagtttattatctaaca 18792954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 131 - 316
Target Start/End: Original strand, 33423902 - 33424087
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgtta 230  Q
    ||||||||||| |||||||||||||||||||||||||    | ||| |||||||||||||||||| || |||| ||||| ||  | || |||||  ||||    
T  33423902 tgttaacaatatagatacaaaatagagaaagagagaacgataacaataaagacggctagggtttcgtagaataacaatagctcaacattacaaagggtta 33424001  T
Q  231 taagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaac 316  Q
    |  |||||||||||||||||||||||| ||| ||||||||| ||||||||   ||||| ||||||| |||||||||||||||||||    
T  33424002 tgggagaatatataataaaacctaatgaactttaacttactaatataaagacgcaataacttaagctcaatactttattatctaac 33424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 135 - 317
Target Start/End: Complemental strand, 21862869 - 21862689
Alignment:
Q  135 aacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataag 234  Q
    |||||||||||||||||||| |||| |||||  |||||| || || |  ||||||||||||||| |||| ||||  ||| |||| |||||  ||||  ||    
T  21862869 aacaatacagatacaaaataaagaacgagag--tatgacaaaaaacggtggctagggtttcatagaataacaattgcttaatattacaaagagttactag 21862772  T
Q  235 agaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||||||||||||||| ||| |||||| || ||||||||   ||||||||||||| ||||||||||||||||||||    
T  21862771 agaatatataataaaacctaatgcactctaacttgctaatataaagacccaatagcttaagctcaatactttattatctaaca 21862689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 22868628 - 22868499
Alignment:
Q  150 aaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaa 249  Q
    ||||||||| ||| |||||| || ||||||||| ||||||||||||||| |||||||||| | | | || |||||| |||||||||||||||||||||||    
T  22868628 aaatagagagagaaagaataggaacaacaaagatggctagggtttcatagaatatcaatagcataacattacaaaaagttataagagaatatataataaa 22868529  T
Q  250 acctaatgtactataacttactgatataaa 279  Q
    |||||||| ||| ||||||||| |||||||    
T  22868528 acctaatggactctaacttactaatataaa 22868499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 123 - 317
Target Start/End: Complemental strand, 10740762 - 10740574
Alignment:
Q  123 tgataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttca-taaaatatcaataacttgatatcac 221  Q
    ||||||||||||||||| ||  ||||||||    ||||||||||||| ||  | ||| |  ||||||||||||| || |||||||||||||| |||| ||    
T  10740762 tgataccatgttaacaaaactcatacaaaa----gaaagagagaataagaatagcaacggaggctagggtttcaatagaatatcaataacttaatattac 10740667  T
Q  222 aaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||||||| |||||||||||||| |||| ||||| ||| ||| || || ||||||||   ||||| ||||||| ||||| ||||||||||||||    
T  10740666 aaaatgttatgagagaatatataat-aaacgtaatggactctaatttgctaatataaag--acaataacttaagcccaatattttattatctaaca 10740574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 182 - 317
Target Start/End: Complemental strand, 18984632 - 18984497
Alignment:
Q  182 acggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaagg 281  Q
    |||||||||||||||||||||| ||||| | |   || || ||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||    
T  18984632 acggctagggtttcataaaataacaatagcattgcattactaaaggttataagagaatatataataaaacataatgtactctaacttactaatataaagg 18984533  T
Q  282 ttcaatagcttaagcgcaatactttattatctaaca 317  Q
      |||||   ||||| ||||| |||||||| |||||    
T  18984532 cccaataatctaagcccaatattttattatttaaca 18984497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 131 - 288
Target Start/End: Original strand, 9290584 - 9290736
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataa-aatatcaataacttgatatcacaaaatgtt 229  Q
    |||||||||||||||||||||||| ||||||||| ||      ||| || ||||||||||||||||| | |||| ||||    | | || |||||| |||    
T  9290584 tgttaacaatacagatacaaaataaagaaagagataa------caagaatgacggctagggtttcattagaataacaattgtctaacattacaaaaggtt 9290677  T
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaata 288  Q
    |||||||||||||||||||||||||||| ||| ||||||| | ||||||||| ||||||    
T  9290678 ataagagaatatataataaaacctaatggactctaacttattaatataaaggctcaata 9290736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 188 - 317
Target Start/End: Complemental strand, 10741901 - 10741772
Alignment:
Q  188 agggtttca-taaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaa 286  Q
    ||||||||| || |||||||||  ||| |||| |||||||||||| |||||||||||||| ||| |||||| ||| |||||| || ||||||||   |||    
T  10741901 agggtttcaatagaatatcaattgcttaatattacaaaatgttatgagagaatatataat-aaatctaatggactctaactttctaatataaagacccaa 10741803  T
Q  287 tagcttaagcgcaatactttattatctaaca 317  Q
    || ||||||| ||||| ||||||||||||||    
T  10741802 taacttaagcccaatattttattatctaaca 10741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 13166569 - 13166484
Alignment:
Q  182 acggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataactt 268  Q
    |||||||||||||||||||||||||||  ||| | || | |||| ||||| |||||||||||||||| || ||||| ||| ||||||    
T  13166569 acggctagggtttcataaaatatcaatggcttaacatta-aaaaggttatgagagaatatataataacacttaatgaactctaactt 13166484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 9365085 - 9365156
Alignment:
Q  184 ggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaat 256  Q
    ||||||| |||| || |||||||||||||| | || |||||| |||| |||||||||||| ||||||||||||    
T  9365085 ggctaggatttcctataatatcaataacttaacattacaaaaggttacaagagaatatat-ataaaacctaat 9365156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 9363118 - 9363168
Alignment:
Q  129 catgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaa 179  Q
    ||||||||||||||| ||||||||| | ||||||||||||| || ||||||    
T  9363118 catgttaacaatacaaatacaaaatcgtgaaagagagaataggaacaacaa 9363168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 21858233 - 21858191
Alignment:
Q  123 tgataccatgttaacaatacagatacaaaatagagaaagagag 165  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||    
T  21858233 tgataccatgttaactatatagatacaaaataaagaaagagag 21858191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 21858072 - 21858039
Alignment:
Q  284 caatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||||| ||||||||||||||||||||    
T  21858072 caatagcttaagctcaatactttattatctaaca 21858039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 151 - 315
Target Start/End: Original strand, 11343870 - 11344032
Alignment:
Q  151 aatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcac-aaaatgttataagagaatatataataaa 249  Q
    ||||||||||||||||| ||||  |||||||||||||| |||||||||||| ||||||| ||| | || || |||||||||||||||| |||||||||||    
T  11343870 aatagagaaagagagaacatgaataacaaagacggctaaggtttcataaaa-atcaatagcttaacattacaaaaatgttataagagagtatataataaa 11343968  T
Q  250 acctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaa 315  Q
    || ||||| ||| ||||||||| |||||||    |||||  |||||| ||||||||||||||||||    
T  11343969 acttaatg-actctaacttactaatataaatagccaata-attaagcccaatactttattatctaa 11344032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 131 - 315
Target Start/End: Complemental strand, 24137784 - 24137600
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagaga-atatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgtt 229  Q
    ||||||||| ||| |||||||||||||||||||| | | | ||  ||||| |  ||||||| ||||||| |||||||||  ||| | || ||| || |||    
T  24137784 tgttaacaaaacaaatacaaaatagagaaagagaaagagaggaataacaacggaggctagg-tttcatataatatcaattgcttaacattacagaaggtt 24137686  T
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaa 315  Q
    |||||||||||||||||||||||||||  ||| |||||||||  | ||||||  ||||| || |||| |||||||||||| |||||    
T  24137685 ataagagaatatataataaaacctaatagactctaacttactagtgtaaaggcccaataactgaagctcaatactttattgtctaa 24137600  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 28432144 - 28432199
Alignment:
Q  113 aactaggctctgataccatgttaacaatacagatacaaaatagagaaagagagaat 168  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||    
T  28432144 aactcggctctcataccatattaacaatatagatacaaaatagagaatgagagaat 28432199  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 11320489 - 11320586
Alignment:
Q  220 acaaaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaacac 318  Q
    |||||| ||||||||||||||||||||||||  ||||| |||  |||||||| ||||||||   ||||| ||||||   ||||| ||||||||||||||    
T  11320489 acaaaaggttataagagaatatataataaaa-ttaatggactccaacttactaatataaagagccaataacttaagtctaatacattattatctaacac 11320586  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 40784275 - 40784160
Alignment:
Q  200 aatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactat-aacttactgatataaaggttcaatagcttaagcgc 298  Q
    ||||||||||| || | ||||||||| |||| |||||| ||||| | ||||| ||||  ||||| |||||| | ||||||||| ||||||| |||||  |    
T  40784275 aatatcaataatttaacatcacaaaaggttacaagagagtatatga-aaaacttaataaactattaacttaataatataaaggctcaatagattaagttc 40784177  T
Q  299 aatactttattatctaa 315  Q
    | |||||||||||||||    
T  40784176 agtactttattatctaa 40784160  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 6643547 - 6643430
Alignment:
Q  131 tgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgtta 230  Q
    |||||||||||||||||||||||||| || ||||||||   | ||| ||| | ||||||||||||||| |||| | ||| ||| | ||   |||| ||||    
T  6643547 tgttaacaatacagatacaaaatagaaaatgagagaatggaaacaataaa-atggctagggtttcatagaataac-atagcttaacattgtaaaaggtta 6643450  T
Q  231 taagagaatatataataaaa 250  Q
    || |||||||||||||||||    
T  6643449 tatgagaatatataataaaa 6643430  T

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Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 120 - 314
Target Start/End: Complemental strand, 33199604 - 33199412
Alignment:
Q  120 ctctgataccatgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatc 219  Q
    ||||||||| ||||||| |||||| |||||||||| |||||||||||||  || ||||  ||   ||||| |||||||| || ||||| ||||| | ||     
T  33199604 ctctgatactatgttaataatacaaatacaaaataaagaaagagagaatgagaacaacggag---gctagagtttcatagaacatcaacaacttaacatt 33199508  T
Q  220 acaaaatgttataagagaatatataataaaacctaa-tgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatcta 314  Q
    ||||||  |||||||  ||||||||||||||||||| | |||| | ||||||| ||||||| | |||||| ||||||  |||||||||||||||||    
T  33199507 acaaaagattataaggaaatatataataaaacctaattatactctgacttactaatataaaagctcaataacttaagatcaatactttattatcta 33199412  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 277
Target Start/End: Complemental strand, 44374797 - 44374651
Alignment:
Q  130 atgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgtt 229  Q
    |||||| ||| | |||||||||||||||||||||| ||||||| |||||||||||||||   |||||||  ||||||||| ||  | || | ||||  ||    
T  44374797 atgttagcaaaatagatacaaaatagagaaagagataatatgaacaacaaagacggcta-aatttcatagcatatcaatagctaaacattaaaaaagatt 44374699  T
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatata 277  Q
    |||| ||||||||||||||||| ||||  ||| ||||| ||| |||||    
T  44374698 ataaaagaatatataataaaacataatagactctaactcactaatata 44374651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 43615545 - 43615458
Alignment:
Q  230 ataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||| |||||||||||||| |||||| ||| ||||||||| ||||||| | |||||| || |||  ||||| ||||||||||||||    
T  43615545 ataagaaaatatataataaaatctaatggactctaacttactaatataaaagctcaataactaaagttcaatattttattatctaaca 43615458  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 20241154 - 20241071
Alignment:
Q  188 agggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttact 271  Q
    |||||||||||||||| ||||| | |   || || |||||||||||||||||||||||||||| |||| | ||| |||||||||    
T  20241154 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataaaatctaacggactctaacttact 20241071  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 20251913 - 20251996
Alignment:
Q  188 agggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttact 271  Q
    |||||||||||||||| ||||| | |   || || |||||||||||||||||||||||||||| |||| | ||| |||||||||    
T  20251913 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataaaatctaacggactctaacttact 20251996  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 20242821 - 20242727
Alignment:
Q  223 aaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||| ||||||||||||||||  |||   ||| ||||||||| |||||||||| ||||| |||||   ||||| |||||||| |||||    
T  20242821 aaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaaca 20242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 20250339 - 20250433
Alignment:
Q  223 aaatgttataagagaatatataataaaacctaatgtactataacttactgatataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||||||| ||||||||||||||||  |||   ||| ||||||||| |||||||||| ||||| |||||   ||||| |||||||| |||||    
T  20250339 aaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaaca 20250433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 43516305 - 43516186
Alignment:
Q  135 aacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttc-ataaaatatcaataacttgatatcacaaaatgttataa 233  Q
    ||||||||| |||||||||||||||| |||||||| |   ||||| ||||||||||||||| ||| |||| || || ||| | || ||| || ||||  |    
T  43516305 aacaatacatatacaaaatagagaaacagagaatagg---aacaatgacggctagggtttcaatagaataccattagcttaacattacataaggttacta 43516209  T
Q  234 gagaatatataataaaacctaatg 257  Q
    |||||||||| |||||||||||||    
T  43516208 gagaatatat-ataaaacctaatg 43516186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 320
Target Start/End: Original strand, 16578749 - 16578896
Alignment:
Q  175 aacaaagacggctagggtttca-taaaatatcaata-acttgatatcacaaaatgttataagagaatatataataaaacctaatgtacta-taacttact 271  Q
    |||||||||| ||||||||||| ||||||| ||||| |   || || |||||| |||| || |||||||||| ||||| |||||| |||  ||||||| |    
T  16578749 aacaaagacgactagggtttcaataaaatagcaatataaaagacattacaaaaggttacaatagaatatata-taaaatctaatggactgctaacttagt 16578847  T
Q  272 gatataaaggttcaatagcttaagcgcaatactttattatctaacacat 320  Q
     ||||||||||||||| | | |||   ||||||||||||||||||||||    
T  16578848 aatataaaggttcaatggttgaagattaatactttattatctaacacat 16578896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 14699336 - 14699422
Alignment:
Q  130 atgttaacaatacagatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgat 216  Q
    |||||||  ||||| ||||||||||||||||||||||||| || ||| || |   | |||||||| ||||||||| |||| ||||||    
T  14699336 atgttaatgatacaaatacaaaatagagaaagagagaataggaacaataatgtaagttagggttttataaaatattaatatcttgat 14699422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 406215 - 406356
Alignment:
Q  176 acaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataataaaacctaatgtactataacttactgata 275  Q
    ||||||| ||||||| ||| |  || || ||||||||| |||| | |||| ||||||| ||||||||||||||||| ||| | ||| |||||| || |||    
T  406215 acaaagatggctaggatttaaataattaacaataacttaatattagaaaaggttataatagaatatataataaaacttaaaggactctaacttgctaata 406314  T
Q  276 taaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    ||||||  ||||| ||||| |  |||||||||||||||||||    
T  406315 taaaggcccaataacttaaacctaatactttattatctaaca 406356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 14540 - 14639
Alignment:
Q  220 acaaaatgttataagagaatatataataaaacctaatgtactat-aacttactgat-ataaaggttcaatagcttaagcgcaatactttattatctaaca 317  Q
    |||||| |||||||||||||||||| ||||||||||   ||||| |||||| | || |||||||  ||||||||||||| ||||||||||||||||||||    
T  14540 acaaaaggttataagagaatatata-taaaacctaacagactatgaacttagtaatgataaaggcccaatagcttaagcccaatactttattatctaaca 14638  T

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