View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20057_low_12 (Length: 419)

Name: NF20057_low_12
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20057_low_12
NF20057_low_12
[»] chr2 (15 HSPs)
chr2 (202-400)||(9007341-9007539)
chr2 (202-400)||(9029238-9029436)
chr2 (234-400)||(8994581-8994747)
chr2 (1-102)||(9029562-9029663)
chr2 (1-100)||(13001597-13001696)
chr2 (202-303)||(9019824-9019925)
chr2 (1-92)||(17117650-17117741)
chr2 (252-330)||(8978445-8978524)
chr2 (142-189)||(9029477-9029524)
chr2 (1-42)||(25222341-25222382)
chr2 (142-182)||(41096693-41096733)
chr2 (146-189)||(13001471-13001514)
chr2 (1-50)||(42759761-42759810)
chr2 (142-189)||(1226415-1226462)
chr2 (142-189)||(42759903-42759948)
[»] chr1 (10 HSPs)
chr1 (1-102)||(1269509-1269610)
chr1 (143-189)||(1269422-1269468)
chr1 (1-102)||(5560433-5560542)
chr1 (41-102)||(37873815-37873876)
chr1 (39-102)||(15441240-15441303)
chr1 (39-102)||(27703580-27703643)
chr1 (142-189)||(50552357-50552404)
chr1 (1-42)||(12884142-12884183)
chr1 (3-100)||(26486380-26486477)
chr1 (142-182)||(48722527-48722566)
[»] chr8 (6 HSPs)
chr8 (1-98)||(42777707-42777804)
chr8 (202-250)||(44882742-44882790)
chr8 (142-189)||(33452655-33452701)
chr8 (1-43)||(3628752-3628794)
chr8 (155-189)||(42777615-42777649)
chr8 (1-42)||(39697943-39697984)
[»] chr7 (11 HSPs)
chr7 (1-102)||(32956725-32956834)
chr7 (1-102)||(26633313-26633422)
chr7 (1-42)||(18895402-18895443)
chr7 (1-42)||(30739141-30739182)
chr7 (37-100)||(9479079-9479142)
chr7 (142-189)||(11672447-11672493)
chr7 (1-40)||(42312029-42312068)
chr7 (148-189)||(6380244-6380285)
chr7 (1-42)||(8358299-8358340)
chr7 (1-42)||(44876160-44876201)
chr7 (1-37)||(33419122-33419158)
[»] chr6 (4 HSPs)
chr6 (1-102)||(11088506-11088606)
chr6 (142-189)||(6360624-6360670)
chr6 (1-42)||(29401158-29401199)
chr6 (37-102)||(30915415-30915480)
[»] chr4 (4 HSPs)
chr4 (1-42)||(43154793-43154834)
chr4 (1-102)||(5545279-5545388)
chr4 (1-42)||(21791552-21791593)
chr4 (42-102)||(22423634-22423694)
[»] chr3 (7 HSPs)
chr3 (1-102)||(42009267-42009376)
chr3 (39-102)||(21596285-21596348)
chr3 (39-98)||(1649882-1649941)
chr3 (142-189)||(8364035-8364081)
chr3 (1-100)||(19965885-19965992)
chr3 (5-42)||(54430570-54430607)
chr3 (1-37)||(23067730-23067766)
[»] chr5 (7 HSPs)
chr5 (40-102)||(27351299-27351361)
chr5 (4-42)||(33281692-33281730)
chr5 (39-100)||(23069172-23069233)
chr5 (1-42)||(29156208-29156249)
chr5 (1-42)||(13656228-13656269)
chr5 (1-42)||(19099319-19099360)
chr5 (2-42)||(7390406-7390446)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 7e-99; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 202 - 400
Target Start/End: Complemental strand, 9007539 - 9007341
Alignment:
Q  202 cactaaaaagtgaacaagaagtccaaccaaccctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgct 301  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007539 cactaaaaaattaacaagcagtccaaccaaccctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgct 9007440  T
Q  302 gatgttgtgtatagtaaactgttttgaaacatttgacaatgttcacccctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007439 gatgttgtgtatagtaaactgttttgaaacatttgacaatgttcacctctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctct 9007341  T

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Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 202 - 400
Target Start/End: Complemental strand, 9029436 - 9029238
Alignment:
Q  202 cactaaaaagtgaacaagaagtccaaccaaccctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgct 301  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  9029436 cactaaaaagtgaacaagaattccattcaaccctcaatatcatgcgacagatatttctccgaatcaaattatgcttgcttagcattgttgtttggctgct 9029337  T
Q  302 gatgttgtgtatagtaaactgttttgaaacatttgacaatgttcacccctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctct 400  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9029336 gatgttgtctatagataactgttttgaaacatttgacaatgttcacccctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctct 9029238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 234 - 400
Target Start/End: Complemental strand, 8994747 - 8994581
Alignment:
Q  234 ctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgctgatgttgtgtatagtaaactgttttgaaacat 333  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  8994747 ctcaatgtcatccgacagatatttctacgaatcaaattatgcttgcttagcattgttgtttggctgctgatgctgtctataggaaactgttttgaaacat 8994648  T
Q  334 ttgacaatgttcacccctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctct 400  Q
    | |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  8994647 tggacattgttcaccccttgcacatcatcaaagttcttatcctgatgctcttcaattacaagcctct 8994581  T

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Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 9029663 - 9029562
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  9029663 tgtgattcttttaatgaaataactttctaaattgactaattatacaaattggggctgctttgatagcaacatatttatgtctagaaaggagaattagagt 9029564  T
Q  101 ct 102  Q
    ||    
T  9029563 ct 9029562  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13001696 - 13001597
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagt 100  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||||| || ||||||||||||||||    
T  13001696 tgtgattcttttaatgaaatagctttataaattgactaattatacaaattgggggtggtttgatagcatcaaatttatgtataaaaaggagaattagagt 13001597  T

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Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 9019925 - 9019824
Alignment:
Q  202 cactaaaaagtgaacaagaagtccaaccaaccctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgct 301  Q
    ||||||| |||||||| |||||| ||  ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  9019925 cactaaagagtgaacaggaagtctaataaaccctcaatatcatgcgacaaatatttctccgaatcaaattatgcttccttagaaatgttgtttggctgct 9019826  T
Q  302 ga 303  Q
    ||    
T  9019825 ga 9019824  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 17117650 - 17117741
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 92  Q
    ||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||| |||||| |||| | || ||||||||| ||| ||||||    
T  17117650 tgtgattctttcaatgaaatagcttttcaaattgactgattatacaaattgggggtggtttgatagtaccagatttatgtccagataggaga 17117741  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 8978524 - 8978445
Alignment:
Q  252 atatttctccgaataaaattatgcttgcttagaattgttgtttggctgctg-atgttgtgtatagtaaactgttttgaaa 330  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||| || |||| ||||| ||| ||||||||||    
T  8978524 atatttctccgaatcaaattatgcttgcttagaaatgctgtttggctgctgaatattgtatataggaaattgttttgaaa 8978445  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 9029524 - 9029477
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9029524 taacatatatatttttttatttaagtggggtgtggatattagacttaa 9029477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25222382 - 25222341
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  25222382 tgtgattctttcaatgaaataactttctaaattgactaatta 25222341  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 41096693 - 41096733
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatatta 182  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  41096693 taacatatatatatttttatttaagtggggggtgggtatta 41096733  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 13001514 - 13001471
Alignment:
Q  146 atatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||| | |||||||||||||||||||||||| ||||||    
T  13001514 atatatatatatatatttaagtggggtgtggatattaaacttaa 13001471  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42759761 - 42759810
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaattatacaaatt 50  Q
    ||||||||||| ||||||||||||||  ||||||||| |||||| |||||    
T  42759761 tgtgattctttcaatgaaataactttccaaattgactgattataaaaatt 42759810  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 1226415 - 1226462
Alignment:
Q  142 taacatatatatatttt-tatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  1226415 taacatatatattttttttatttaagtggggtgtgg-tattagacttaa 1226462  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 42759903 - 42759948
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||||| ||||||||||||||||  |||||||||||| ||||    
T  42759903 taacatatatatttttttatttaagtggg--gtggatattagatttaa 42759948  T

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Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 1269610 - 1269509
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagt 100  Q
    ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| |||||| || ||||||||||||||||||||||||||||    
T  1269610 tgtgattcttttaatgaaatagcttttcaaattgactaattttacaaattgggggtggtttcatagcatcagatttatgtctagaaaggagaattagagt 1269511  T
Q  101 ct 102  Q
    ||    
T  1269510 ct 1269509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 1269468 - 1269422
Alignment:
Q  143 aacatatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  1269468 aacatatatatatttttatttaagtgaggtgtggatattagacttaa 1269422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5560542 - 5560433
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgac--------taattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 92  Q
    ||||||||||| ||||||||||||||||||||||||        | |||||||||||||||| ||||||  ||||| || ||||||||| ||||| ||||    
T  5560542 tgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgggggtggtttggtagcaccagatttatgtccagaaatgaga 5560443  T
Q  93 attagagtct 102  Q
    | || |||||    
T  5560442 actatagtct 5560433  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 37873815 - 37873876
Alignment:
Q  41 tatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 102  Q
    |||||||||||  | |||||| |||||| ||||||||||||||||||| |||| ||||||||    
T  37873815 tatacaaattgatggtggtttgatagcatcaaatttatgtctagaaagtagaactagagtct 37873876  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 15441303 - 15441240
Alignment:
Q  39 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 102  Q
    |||||||||||||  | |||||| ||||||  | ||||||||||||||||||||| ||||||||    
T  15441303 attatacaaattgtaggtggtttgatagcattatatttatgtctagaaaggagaactagagtct 15441240  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 27703580 - 27703643
Alignment:
Q  39 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 102  Q
    |||||||||||||||| |||||| |||||| |||||||||||  | ||| ||||| ||||||||    
T  27703580 attatacaaattgggggtggtttgatagcatcaaatttatgttcaaaaaagagaactagagtct 27703643  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 50552404 - 50552357
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||||| ||||||||||||||||| |||| ||||||| ||||    
T  50552404 taacatatatatttttttatttaagtggggggtgggtattagatttaa 50552357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12884142 - 12884183
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||    
T  12884142 tgtgattctttcaatgaaatagctttttaaattgactgatta 12884183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 26486380 - 26486477
Alignment:
Q  3 tgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagt 100  Q
    ||||| ||| ||||||||| ||||| | ||| | | |||||||||||||  | |||||| |||||| ||||||||| || |||||| |||| ||||||    
T  26486380 tgattttttcaatgaaatagcttttcagattaagtgattatacaaattgatgatggtttgatagcatcaaatttatttccagaaagtagaactagagt 26486477  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 48722527 - 48722566
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatatta 182  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  48722527 taacatatatat-tttttatttaagtggggggtggatatta 48722566  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 42777804 - 42777707
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattaga 98  Q
    ||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||| |||||| ||| || || |||||||| |||||||||||||||||    
T  42777804 tgtgattcttttaattaaatagctttctaaattgactaattacacaaattgggggtggtttgatatcatcatatttatgtatagaaaggagaattaga 42777707  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 44882742 - 44882790
Alignment:
Q  202 cactaaaaagtgaacaagaagtccaaccaaccctcaatatcatgcgaca 250  Q
    ||||||| | |||||| ||||||||| ||||||||||||||||||||||    
T  44882742 cactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgaca 44882790  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 33452701 - 33452655
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  33452701 taacatacatatatttttatttaagcggggtgt-gatattagacttaa 33452655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3628752 - 3628794
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaattat 43  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||    
T  3628752 tgtgattctttcaatgaaataacttttcaaattgactgattat 3628794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 42777649 - 42777615
Alignment:
Q  155 tttttatttaagtggggtgtggatattagacttaa 189  Q
    ||||||||||||| |||||||||||||||||||||    
T  42777649 tttttatttaagtagggtgtggatattagacttaa 42777615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39697943 - 39697984
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||    
T  39697943 tgtgattctttcaatgaaatagcttttcaaattgactaatta 39697984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 32956834 - 32956725
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta--------tacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 92  Q
    ||||||||||| |||||||||||||| |||||||||| ||||        || ||||||||| |||||| |||||| || ||||||||| ||||||||||    
T  32956834 tgtgattctttcaatgaaataactttataaattgactgattaaatgattataaaaattgggggtggtttgatagcatcagatttatgtccagaaaggaga 32956735  T
Q  93 attagagtct 102  Q
    | ||||||||    
T  32956734 actagagtct 32956725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26633422 - 26633313
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta--------tacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 92  Q
    ||||||||||| ||||||||| ||||| ||||||||| ||||        |||||||||  | ||||||||||||| |||||||||||| |||||| |||    
T  26633422 tgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgatggtggttttatagcatcaaatttatgtccagaaagtaga 26633323  T
Q  93 attagagtct 102  Q
    | ||||||||    
T  26633322 actagagtct 26633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18895402 - 18895443
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  18895402 tgtgattctttcaatgaaataactttttaaattgactgatta 18895443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30739182 - 30739141
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  30739182 tgtgattcttttaatgaaataacttttcaaattgactgatta 30739141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 9479142 - 9479079
Alignment:
Q  37 taattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagt 100  Q
    |||||||||||||||  | |||||| |||||| |||||||||||| |||||| |||| ||||||    
T  9479142 taattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactagagt 9479079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 11672493 - 11672447
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  11672493 taacatatatat-tttttatttaagtggggggtggatattagatttaa 11672447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42312068 - 42312029
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaat 40  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  42312068 tgtgattcttttaatgaaatagcttttcaaattgactaat 42312029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 6380244 - 6380285
Alignment:
Q  148 atatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||| ||||||||||||| ||| |||||||||||||||||    
T  6380244 atatatttttttatttaagtagggagtggatattagacttaa 6380285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8358299 - 8358340
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||    
T  8358299 tgtgattctttcaatgagataactttttaaattgactgatta 8358340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44876160 - 44876201
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  44876160 tgtgattcttttaatgaaatagctttctaaattgactgatta 44876201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33419122 - 33419158
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgact 37  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  33419122 tgtgattctttcaatgaaataacttttcaaattgact 33419158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 11088606 - 11088506
Alignment:
Q  1 tgtgattcttttaat-gaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagag 99  Q
    |||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||| ||||||  ||||| || ||||||||| |  ||||||||||||||    
T  11088606 tgtgattctttttattgaaatagcttttcaaattgactgattatataaattgggggtggtttggtagcatcagatttatgtcca--aaggagaattagag 11088509  T
Q  100 tct 102  Q
    |||    
T  11088508 tct 11088506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 6360670 - 6360624
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  6360670 taacatatatat-tttttatttaagtggggggtggatattagatttaa 6360624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29401199 - 29401158
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||    
T  29401199 tgtgattctttcaatgaaataacttttcaaattgactgatta 29401158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 30915415 - 30915480
Alignment:
Q  37 taattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 102  Q
    |||||||||||||||  |  ||||| |||||| |||||||||||| |||||| |||| ||||||||    
T  30915415 taattatacaaattgatgggggtttgatagcatcaaatttatgtccagaaagtagaactagagtct 30915480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43154793 - 43154834
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  43154793 tgtgattcttttaatgaaataactttttaaattgactgatta 43154834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5545388 - 5545279
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgac--------taattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 92  Q
    ||||||||||||||||||||| ||||  ||||||||        | |||||||||||||| | |||||| || ||| |||||||||||| ||| || |||    
T  5545388 tgtgattcttttaatgaaatagctttccaaattgaccgattaagtgattatacaaattggtggtggtttgatggcatcaaatttatgtccagacagaaga 5545289  T
Q  93 attagagtct 102  Q
    ||||||||||    
T  5545288 attagagtct 5545279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21791552 - 21791593
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||    
T  21791552 tgtgattctttcaatgaaataacttttcaaattgactgatta 21791593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 22423694 - 22423634
Alignment:
Q  42 atacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 102  Q
    ||||||||||  | |||||| |||||| |||||||||||| |||||| |||| ||||||||    
T  22423694 atacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactagagtct 22423634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 42009267 - 42009376
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgac--------taattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 92  Q
    ||||||||||| ||||||||||||||||||||||||        | |||||||||||||  | |||||| |||||| |||||||||||| |||||| |||    
T  42009267 tgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtaga 42009366  T
Q  93 attagagtct 102  Q
    | || |||||    
T  42009367 actaaagtct 42009376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 21596348 - 21596285
Alignment:
Q  39 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 102  Q
    |||||||||||||||  |||||| |||||| |  ||||||||| ||||||||||||||||||||    
T  21596348 attatacaaattgggagtggtttgatagcatctgatttatgtccagaaaggagaattagagtct 21596285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 1649882 - 1649941
Alignment:
Q  39 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattaga 98  Q
    |||||||||||||||| || ||| |||||| || ||||||||||||||| ||||| ||||    
T  1649882 attatacaaattgggggtgatttgatagcaccagatttatgtctagaaaagagaactaga 1649941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 8364081 - 8364035
Alignment:
Q  142 taacatatatatatttttatttaagtggggtgtggatattagacttaa 189  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  8364081 taacatatatat-tttttatttaagtggggggtggatattagatttaa 8364035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19965885 - 19965992
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta--------tacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 92  Q
    ||||||||||||||||||||| ||||| || || ||||||||        ||||||||||   |||||| |||||| || ||||||||| | ||||||||    
T  19965885 tgtgattcttttaatgaaatagcttttcaatttaactaattaagtgattatacaaattggcagtggtttgatagcatcagatttatgtccaaaaaggaga 19965984  T
Q  93 attagagt 100  Q
    ||||||||    
T  19965985 attagagt 19965992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 54430607 - 54430570
Alignment:
Q  5 attcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  54430607 attcttttaatgaaataacttttcaaattgactgatta 54430570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23067730 - 23067766
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgact 37  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  23067730 tgtgattctttaaatgaaataacttttcaaattgact 23067766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 27351361 - 27351299
Alignment:
Q  40 ttatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 102  Q
    ||||||||||||| | |||||| |||||| |||||||||||  ||||||||||| ||||||||    
T  27351361 ttatacaaattggaggtggtttgatagcaccaaatttatgttcagaaaggagaactagagtct 27351299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 33281730 - 33281692
Alignment:
Q  4 gattcttttaatgaaataactttttaaattgactaatta 42  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  33281730 gattctttcaatgaaataactttttaaattgactaatta 33281692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 23069233 - 23069172
Alignment:
Q  39 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagt 100  Q
    |||||||||||||||| ||||||  ||||| || ||||||||  ||||||||||||||||||    
T  23069233 attatacaaattgggggtggtttgctagcatcatatttatgttcagaaaggagaattagagt 23069172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29156249 - 29156208
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  29156249 tgtgattctttcaatgaaataactttttaaattgactgatta 29156208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13656269 - 13656228
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||    
T  13656269 tgtgattctttcaatgaaataacttttcaaattgactgatta 13656228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19099319 - 19099360
Alignment:
Q  1 tgtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||    
T  19099319 tgtgattctttcaatgaaatagctttttaaattgactgatta 19099360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 7390406 - 7390446
Alignment:
Q  2 gtgattcttttaatgaaataactttttaaattgactaatta 42  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  7390406 gtgattctttcgatgaaataactttttaaattgactgatta 7390446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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