View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20057_low_15 (Length: 376)
Name: NF20057_low_15
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_low_15 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 6555716 - 6555367
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555716 |
actaagttgggtaaatgacaaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggttttagag |
6555617 |
T |
|
| Q |
118 |
cctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttctatatctttcaaatttaatgtggcagcatc |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555616 |
cctccaaaaccaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttctatatctttcaaatttaatgtggcagcatc |
6555517 |
T |
|
| Q |
218 |
tgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattatgggcttcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555516 |
tgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattatgggcttcc |
6555417 |
T |
|
| Q |
318 |
acaataaaatatgacagggtctgaagattatttagctttcccatattctt |
367 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6555416 |
acaataaaatatgacaaggtctgaagattatttagctttcccatattctt |
6555367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 6528150 - 6527801
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
6528150 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttgtatag |
6528051 |
T |
|
| Q |
118 |
cctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttctatatctttcaaatttaatgtggcagcatc |
217 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6528050 |
cctccaagactaacaggttgctttcagccatttcttctcttccgccattgaactcagtatgcaattcttctatatctttcaaatttaatggggcagcatc |
6527951 |
T |
|
| Q |
218 |
tgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattatgggcttcc |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527950 |
tgcagtatcactgacattacccaagcctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattatgggcttcc |
6527851 |
T |
|
| Q |
318 |
acaataaaatatgacagggtctgaagattatttagctttcccatattctt |
367 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6527850 |
acaataaaatatgacaaggtctgaagattatttagctttcccatattctt |
6527801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 6521407 - 6521061
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
||||||||||||||||||| | | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || || |
|
|
| T |
6521407 |
actaagttgggtaaatgacaatcac---gccaatttggaaatctactacctttgtagcgtgtgatgttgagcttcttcaagttgctatttgattgtatag |
6521311 |
T |
|
| Q |
118 |
cctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttctatatctttcaaatttaatgtggcagcatc |
217 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521310 |
cctccaagactaacaggttgctttcagccatttcttctcttccgccattgaactctgtatgtaattcttctatatctttcaaatttaatgtggcagcatc |
6521211 |
T |
|
| Q |
218 |
tgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattatgggcttcc |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521210 |
tgcagtatcactaacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattatgggcttcc |
6521111 |
T |
|
| Q |
318 |
acaataaaatatgacagggtctgaagattatttagctttcccatattctt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6521110 |
acaataaaatatgacagggtctgaagattacttagctttcccatattctt |
6521061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 6734711 - 6735065
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734711 |
actaagttgcgtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
6734810 |
T |
|
| Q |
118 |
cctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttcta---------tatctttcaaatttaatgt |
208 |
Q |
| |
|
||||||| ||||||| | |||||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||| |||| |
|
|
| T |
6734811 |
cctccaagactaacacacttctttcatccatttcttctcttccgccattgaactccatttgtaattcttctaaatacttcttatctttcaaatttgatgt |
6734910 |
T |
|
| Q |
209 |
ggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcatta |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734911 |
ggcagcatctgcaggatcactgacattacccagccctttaatatgaattgttccatgaagctggttgagttttgccaaatctttgagatcagattcatta |
6735010 |
T |
|
| Q |
309 |
tgggcttccacaataaaatatgacagggtctgaagattatttagctttcccatat |
363 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||| |||||||||||||||| |
|
|
| T |
6735011 |
tgggcttccacaataaaatatgataggctttgaagattgtttagctttcccatat |
6735065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 8453399 - 8453761
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||||||| ||| |||||||||| | || |||| | ||| |||||||||| |||||||||| |||| |
|
|
| T |
8453399 |
actaagtttggtaaatgataaccccttatccaatttggaaagctattacctttgtattttgagatggtaagcctcttcaagtttctatttggttggagag |
8453498 |
T |
|
| Q |
118 |
cctccaaaactaacaggttactttcagccatt------------tcttctcgtccgccattgaactcagtatgtaattcttcta---------tatcttt |
196 |
Q |
| |
|
||||||| ||| ||| || |||||||||||| ||||||| |||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
8453499 |
cctccaagactgacacattgctttcagccattgactcatccatttcttctcttccgccatcaaacttcatatgtaattcttctaaatatttcgtatcttt |
8453598 |
T |
|
| Q |
197 |
caaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgaga |
296 |
Q |
| |
|
|||||||| || |||| ||||||| ||| || |||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
8453599 |
caaatttacagtagcagaatctgcaagatcgctaacattacccaacccttcaatatcaattgctccatgaagatggtttagttttgccaactctttaaga |
8453698 |
T |
|
| Q |
297 |
tcagattcattatgggcttccacaataaaatatgacagggtctgaagattatttagctttccc |
359 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||||| | | |||||||| |||||||||||| |
|
|
| T |
8453699 |
tcagatacattctgctcttccacaataaaatatgacaagctttgaagattgtttagctttccc |
8453761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 363
Target Start/End: Original strand, 6946248 - 6946401
Alignment:
| Q |
210 |
gcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattat |
309 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| || || |||||||| ||||| | |
|
|
| T |
6946248 |
gcagcatctgcaggatcaatcacattacccaaccctttaatatcaattgttccatgaagatggtttagtttccccaactccttaagatcagactcattct |
6946347 |
T |
|
| Q |
310 |
gggcttccacaataaaatatgacagggtctgaagattatttagctttcccatat |
363 |
Q |
| |
|
| |||||||||||||||| | | || ||||||||| ||||| ||||| |||| |
|
|
| T |
6946348 |
gctcttccacaataaaataaggtaaggcctgaagattgtttagatttcctatat |
6946401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 6840170 - 6840067
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||| ||||||| ||| |||||||||||||| | ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
6840170 |
actaagttggataaatgacaagcccttagccaacttggaaagctattacctttgtagtgttttatgttgagcttctccaagttgctatttggttgaagag |
6840071 |
T |
|
| Q |
118 |
cctc |
121 |
Q |
| |
|
|||| |
|
|
| T |
6840070 |
cctc |
6840067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 6946035 - 6946138
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
|||||||| | ||||||| ||| ||||||||||||||||| ||||| || ||||||| ||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
6946035 |
actaagtttgataaatgaaaaccacttagccaatttggaaagctactgccattgtagtatgtgatggtgagcttcttcaagttgctctttggttgaagag |
6946134 |
T |
|
| Q |
118 |
cctc |
121 |
Q |
| |
|
|||| |
|
|
| T |
6946135 |
cctc |
6946138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 8570220 - 8570114
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
||||||||||||||| || |||| ||| |||||||||||| ||||| || ||||||| ||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
8570220 |
actaagttgggtaaaagaaaacccattaaccaatttggaaagctactgccattgtagtatgtgatggtgagcctcttcaagttgctatttggttgaagag |
8570121 |
T |
|
| Q |
118 |
cctccaa |
124 |
Q |
| |
|
| ||||| |
|
|
| T |
8570120 |
catccaa |
8570114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 7586635 - 7586738
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
|||||||||||||||| || |||||| | |||||||| ||| ||| ||||||||||||||| |||| | ||| |||||||| |||||||||||| |||| |
|
|
| T |
7586635 |
actaagttgggtaaatcacaacccctcatccaatttgcaaacctattacctttgtagtgtgagatgataagcctcttcaagctgctatttggttgaagag |
7586734 |
T |
|
| Q |
118 |
cctc |
121 |
Q |
| |
|
|||| |
|
|
| T |
7586735 |
cctc |
7586738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 6481251 - 6481145
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||| ||||| | || |||| |||| | ||| |||| ||| | |||||||||| |||| |
|
|
| T |
6481251 |
actaagttgggtaaatgacaaccccttatccaatttggaaatctattacctctatattgtgagatgctaagcctctttaagcttctatttggttgaagag |
6481152 |
T |
|
| Q |
118 |
cctccaa |
124 |
Q |
| |
|
||||||| |
|
|
| T |
6481151 |
cctccaa |
6481145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 6729991 - 6729885
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||| ||| ||| | || ||||||||| |||||||||| ||||| |
|
|
| T |
6729991 |
actaagttgggtaaatgacaacccctcagccaatttggaaagctattacctttgtatcgtgagattgtaagtcacttcaagtttctatttggttgtagag |
6729892 |
T |
|
| Q |
118 |
cctccaa |
124 |
Q |
| |
|
||||||| |
|
|
| T |
6729891 |
cctccaa |
6729885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 6486270 - 6486191
Alignment:
| Q |
42 |
cttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagagcctc |
121 |
Q |
| |
|
||||||||| ||||||| | | ||||||||||| || |||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6486270 |
cttagccaacttggaaaacgattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
6486191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 6932336 - 6932419
Alignment:
| Q |
38 |
accccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagagcctc |
121 |
Q |
| |
|
|||| |||||||| ||||||| | | ||||||||||| || |||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6932336 |
accctttagccaacttggaaaacgattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
6932419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 6450063 - 6449957
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||| ||| ||| | || |||| | ||| |||||||||| ||||| |
|
|
| T |
6450063 |
actaagttgggtaaatgacaacccctcagccaatttggaaagctattacctttgtatcgtgagattgtaagtctctttaggtttctatttggttgtagag |
6449964 |
T |
|
| Q |
118 |
cctccaa |
124 |
Q |
| |
|
||||||| |
|
|
| T |
6449963 |
cctccaa |
6449957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 363
Target Start/End: Complemental strand, 6480994 - 6480885
Alignment:
| Q |
254 |
aattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattatgggcttccacaataaaatatgacagggtctgaagattatttagc |
353 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||| ||||||||||||||| |||| | ||||||||| |||||| | ||| || |||||| | |||||| |
|
|
| T |
6480994 |
aatttttccatgaagatggtttagtttttccaactctttgagatcagatccatttttctcttccacaacaaaataaggcagtgtttgaagactgtttagc |
6480895 |
T |
|
| Q |
354 |
tttcccatat |
363 |
Q |
| |
|
||||| |||| |
|
|
| T |
6480894 |
tttcctatat |
6480885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 8588694 - 8588778
Alignment:
| Q |
190 |
tatctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggtt |
274 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||| | ||||||||||| ||||| ||||||||| | |||||||||||||| |
|
|
| T |
8588694 |
tatctttcaaattggctgtcacagcatctgcaggatcaattacattacccaaaccttttatatgaattttcccatgaagatggtt |
8588778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 8588525 - 8588607
Alignment:
| Q |
42 |
cttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagagcctccaa |
124 |
Q |
| |
|
|||| |||||||||||| ||| | |||||||| | || |||| | ||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
8588525 |
cttatccaatttggaaacctattgcctttgtattttgagatggtaagcctcttcaagtttctatttggttgaagagcctccaa |
8588607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 8764 - 8406
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagag |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
8764 |
actaagttcggtaaatgactaccccttagccaatttggaaagctactacctttgtagcatgtgatgttgagcttcttcaagttgctatttggttgtaaag |
8665 |
T |
|
| Q |
118 |
cctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttcta---------tatctttcaaatttaatgt |
208 |
Q |
| |
|
||||||| ||||||| | |||||| |||||||||||| ||||||||||||||| | || |||||||||| |||||||||||||| |||| |
|
|
| T |
8664 |
cctccaagactaacacacttctttcatccatttcttctcttccgccattgaactccatttgaaattcttctaaatacttcttatctttcaaatttgatgt |
8565 |
T |
|
| Q |
209 |
ggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcatta |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8564 |
ggcagcatctgcaggatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcatta |
8465 |
T |
|
| Q |
309 |
tgggcttccacaataaaatatgacagggtctgaagattatttagctttcccatattctt |
367 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8464 |
tgggcttccacaataaaatatgacatggtctgaagattatttagctttcccatattctt |
8406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 374
Target Start/End: Complemental strand, 2623847 - 2623664
Alignment:
| Q |
190 |
tatctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatc |
289 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| ||| ||||||||| |||| |||| |||||||||||||||||||| |||||| |||||||||| || |
|
|
| T |
2623847 |
tatctttcaaatttactgtagcagcatctgcaagatcgctgacattatccaagccttcaatatgaattgttccatgaa-atggttttgttttgccaactc |
2623749 |
T |
|
| Q |
290 |
tttgagatcagattcattatgggcttccacaataaaatatgacagggtctgaagattatttagctttcccatattcttcgacatc |
374 |
Q |
| |
|
||| ||||||||| ||||||| ||||| ||||||||||| ||| | | |||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
2623748 |
tttaagatcagatccattatgctcttccccaataaaatataacatgctttgaagattgtttagctttcccatatgctttgacatc |
2623664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 6574591 - 6574499
Alignment:
| Q |
18 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggt |
110 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||||||||| || || || ||||||| | ||||| ||||| ||| | ||||||||||||| |
|
|
| T |
6574591 |
actaagttaggtaaatgagaacaccttagccaatttggaaagctgctgccattgtagtatttgatggtgagcctctgtaggttgctatttggt |
6574499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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