View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20057_low_17 (Length: 366)

Name: NF20057_low_17
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20057_low_17
NF20057_low_17
[»] chr1 (14 HSPs)
chr1 (1-366)||(25604717-25605085)
chr1 (1-340)||(25886907-25887247)
chr1 (1-340)||(25482526-25482851)
chr1 (1-340)||(25861184-25861509)
chr1 (134-340)||(25604477-25604669)
chr1 (134-340)||(25886641-25886833)
chr1 (130-340)||(25885428-25885624)
chr1 (194-340)||(25885694-25885828)
chr1 (219-312)||(50668318-50668414)
chr1 (219-275)||(50667238-50667294)
chr1 (23-56)||(50666600-50666633)
chr1 (2-74)||(25605241-25605313)
chr1 (2-74)||(25861665-25861737)
chr1 (2-74)||(25887403-25887475)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 25605085 - 25604717
Alignment:
Q  1 tattttaatatgttagaaaggtaaaaaa-gaaaaggacaaggcacaaacttactttccactttttgctgataagcnnnnnnn-tgtttagaaacatgtga 98  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  25605085 tattttaatatgttagaaaggtaaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagcaaaaaaaatgtttagaaacatgtga 25604986  T
Q  99 ggaggcctctcagcaagaaacgggtcagacatcacaggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcag 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25604985 ggaggcctctcagcaagaaacgggtcagacatcacaggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcag 25604886  T
Q  199 gaaaagggttgcaaaccggattggtcgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttca-ttttcatcaaataa 297  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25604885 gaaaagggttgcaaaccggattggttgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttcatttttcatcaaataa 25604786  T
Q  298 gacaccaaagagtgaccattttgttaatatggatgaatgttttnnnnnnnntaagacacaaacttactt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  25604785 gacaccaaagagtgaccattttgttaatatggatgaatgttttaaaaaaaataagacacaaacttactt 25604717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 25887247 - 25886907
Alignment:
Q  1 tattttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagcnnnnnnn-tgtttagaaacatgtgag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||         ||||||||||||||||||    
T  25887247 tattttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgcttataagtaaaaaaaatgtttagaaacatgtgag 25887148  T
Q  100 gaggcctctcagcaagaaacgggtcagacatcacaggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcagg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25887147 gaggcctctcagcaagaaacgggtcagacatcacaggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcagg 25887048  T
Q  200 aaaagggttgcaaaccggattggtcgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttca-ttttcatcaaataag 298  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25887047 aaaagggttgcaaaccggattggtcgtctcaagaagctcttcctctaagctctctactttttgcctcttagcaactcctgttcatttttcatcaaataag 25886948  T
Q  299 acaccaaagagtgaccattttgttaatatggatgaatgtttt 340  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  25886947 acaccaaagagtgacaatttt-ttaatatggatgaatgtttt 25886907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 25482526 - 25482851
Alignment:
Q  1 tattttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagcnnnnnnn-tgtttagaaacatgtgag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  25482526 tattttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagcaaaaaaaatgtttagaaacatgtgag 25482625  T
Q  100 gaggcctctcagcaagaaacgggtcagacatcacaggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcagg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  25482626 gaggcctctcagcaagaaacgggtcagacatcacaggatgcttctcagcaacaagcggtttggtccttacgaacttactttccttttctttcttagcagg 25482725  T
Q  200 aaaagggttgcaaaccggattggtcgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttca-ttttcatcaaataag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||| |||| |||||||||||||||    
T  25482726 aaaagggttgcaaaccggattggtcgtctcaagaggctcttcctcta---------------ccctcttagcaactcctattcatttttcatcaaataag 25482810  T
Q  299 acaccaaagagtgaccattttgttaatatggatgaatgtttt 340  Q
    | ||||||| ||||||| ||| ||||||||| ||||||||||    
T  25482811 ataccaaagggtgacca-tttattaatatgggtgaatgtttt 25482851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 25861509 - 25861184
Alignment:
Q  1 tattttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagcnnnnnnn-tgtttagaaacatgtgag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  25861509 tattttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagcaaaaaaaatgtttagaaacatgtgag 25861410  T
Q  100 gaggcctctcagcaagaaacgggtcagacatcacaggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcagg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  25861409 gaggcctctcagcaagaaacgggtcagacatcacaggatgcttctcagcaacaagcggtttggtccttacgaacttactttccttttctttcttagcagg 25861310  T
Q  200 aaaagggttgcaaaccggattggtcgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttca-ttttcatcaaataag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||| |||| |||||||||||||||    
T  25861309 aaaagggttgcaaaccggattggtcgtctcaagaggctcttcctcta---------------ccctcttagcaactcctattcatttttcatcaaataag 25861225  T
Q  299 acaccaaagagtgaccattttgttaatatggatgaatgtttt 340  Q
    | ||||||| ||||||| ||| ||||||||| ||||||||||    
T  25861224 ataccaaagggtgacca-tttattaatatgggtgaatgtttt 25861184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 134 - 340
Target Start/End: Complemental strand, 25604669 - 25604477
Alignment:
Q  134 aggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcaggaaaagggttgcaaaccggattggtcgtctcaaga 233  Q
    |||| |||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25604669 aggacgcttctcagcaacaagtggtttggtcattacgaacttactttccttttctttcttagcagcaaaagggttgcaaaccggattggtcgtctcaaga 25604570  T
Q  234 ggctcttcctctaagctctctactttttgcctcttagcaactcctgttca-ttttcatcaaataagacaccaaagagtgaccattttgttaatatggatg 332  Q
    | |||||||||||               ||||||||| || ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  25604569 gactcttcctcta---------------gcctcttagtaattcctgttcatttttcatcaaataagataccaaagggtgaccattttgttaatatggatg 25604485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 134 - 340
Target Start/End: Complemental strand, 25886833 - 25886641
Alignment:
Q  134 aggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcaggaaaagggttgcaaaccggattggtcgtctcaaga 233  Q
    |||| |||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25886833 aggacgcttctcagcaacaagtggtttggtcattacgaacttactttccttttctttcttagcagcaaaagggttgcaaaccggattggtcgtctcaaga 25886734  T
Q  234 ggctcttcctctaagctctctactttttgcctcttagcaactcctgttca-ttttcatcaaataagacaccaaagagtgaccattttgttaatatggatg 332  Q
    | |||||||||||               ||||||||| || ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  25886733 gactcttcctcta---------------gcctcttagtaaatcctgttcatttttcatcaaataagataccaaagggtgaccattttgttaatatggatg 25886649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 130 - 340
Target Start/End: Complemental strand, 25885624 - 25885428
Alignment:
Q  130 tcacaggatgcttctcagcaacacgcggtttggtccttacgaacttactctccttttctttcttagcaggaaaagggttgcaaaccggattggtcgtctc 229  Q
    ||||||||  ||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  25885624 tcacaggacacttctcagcaacaagcggtttggtcattacgaacttactttccttttctttcttagcagcaaaagggttgcaaaccggataggtcgtctc 25885525  T
Q  230 aagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttca-ttttcatcaaataagacaccaaagagtgaccattttgttaatatg 328  Q
    ||||| |||||||||||               ||||||||| |||||| ||||| |||||||||||||||| ||||||| ||||||||||| ||||||||    
T  25885524 aagagactcttcctcta---------------gcctcttagtaactccggttcatttttcatcaaataagataccaaagggtgaccattttattaatatg 25885440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 340
Target Start/End: Complemental strand, 25885828 - 25885694
Alignment:
Q  194 agcaggaaaagggttgcaaaccggattggtcgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttca-ttttcatca 292  Q
    |||||||||||||||||||||| |||||||||||||||||||| | || ||      ||||||      ||||||||||||||||||||| |||||||||    
T  25885828 agcaggaaaagggttgcaaaccagattggtcgtctcaagaggcccctcttc------ctctac------cctcttagcaactcctgttcatttttcatca 25885741  T
Q  293 aataagacaccaaagagtgaccattttgttaatatggatgaatgtttt 340  Q
    |||||||  |||||| ||||||||||| ||||||||||||||||||||    
T  25885740 aataagatgccaaagggtgaccatttt-ttaatatggatgaatgtttt 25885694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 50668414 - 50668318
Alignment:
Q  219 ttggtcgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttca---ttttcatcaaataagacaccaaagagtga 312  Q
    ||||||||| |||||| |||| |||||| ||||||||||||||||  ||||||||||  ||||||   |||| ||||||||||| ||||||| ||||    
T  50668414 ttggtcgtcacaagagactctccctctatgctctctactttttgctgcttagcaacttttgttcattgttttgatcaaataagaaaccaaagggtga 50668318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 50667294 - 50667238
Alignment:
Q  219 ttggtcgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaact 275  Q
    ||||||||| ||||||||||| |||||| |||||||||||| ||| |||||| ||||    
T  50667294 ttggtcgtcacaagaggctctccctctatgctctctactttctgcttcttagtaact 50667238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 50666633 - 50666600
Alignment:
Q  23 aaaaaagaaaaggacaaggcacaaacttactttc 56  Q
    ||||||||||| ||||||||||||||||||||||    
T  50666633 aaaaaagaaaacgacaaggcacaaacttactttc 50666600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 25605313 - 25605241
Alignment:
Q  2 attttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagc 74  Q
    ||||||||||| | ||  | |||||||||||| |||| ||||||||||||||||| |||| ||| | ||||||    
T  25605313 attttaatatggttgactgttaaaaaagaaaaagacatggcacaaacttactttcaacttcttgtttataagc 25605241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 25861737 - 25861665
Alignment:
Q  2 attttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagc 74  Q
    ||||||||||| | ||  | |||||||||||| |||| ||||||||||||||||| |||| ||| | ||||||    
T  25861737 attttaatatggttgactgttaaaaaagaaaaagacatggcacaaacttactttcaacttcttgtttataagc 25861665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 25887475 - 25887403
Alignment:
Q  2 attttaatatgttagaaaggtaaaaaagaaaaggacaaggcacaaacttactttccactttttgctgataagc 74  Q
    ||||||||||| | ||  | |||||||||||| |||| ||||||||||||| |||||||| ||| | ||||||    
T  25887475 attttaatatggttgactgttaaaaaagaaaaagacatggcacaaacttaccttccacttcttgtttataagc 25887403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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