View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20057_low_18 (Length: 344)

Name: NF20057_low_18
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20057_low_18
NF20057_low_18
[»] chr7 (25 HSPs)
chr7 (8-295)||(18873133-18873420)
chr7 (8-290)||(15167948-15168230)
chr7 (8-286)||(10895795-10896073)
chr7 (8-294)||(14422758-14423043)
chr7 (17-301)||(12709833-12710117)
chr7 (17-301)||(13122904-13123188)
chr7 (8-290)||(16009351-16009631)
chr7 (17-301)||(13743492-13743774)
chr7 (82-301)||(12590633-12590850)
chr7 (8-301)||(13007207-13007497)
chr7 (94-288)||(16677152-16677348)
chr7 (94-288)||(17651388-17651584)
chr7 (235-327)||(21230923-21231015)
chr7 (235-314)||(20311026-20311107)
chr7 (235-290)||(11382871-11382926)
chr7 (235-290)||(11389348-11389403)
chr7 (235-327)||(148619-148711)
chr7 (171-290)||(13679428-13679548)
chr7 (236-291)||(2971254-2971309)
chr7 (236-291)||(20906461-20906516)
chr7 (236-290)||(11311059-11311113)
chr7 (255-296)||(831628-831669)
chr7 (255-296)||(1196808-1196849)
chr7 (255-296)||(34958578-34958619)
chr7 (234-290)||(46625961-46626017)
[»] chr5 (15 HSPs)
chr5 (8-295)||(22750914-22751201)
chr5 (15-327)||(38144500-38144810)
chr5 (8-290)||(28370055-28370335)
chr5 (8-290)||(19512160-19512441)
chr5 (82-295)||(23528479-23528690)
chr5 (235-314)||(22438723-22438803)
chr5 (235-327)||(42961566-42961658)
chr5 (226-290)||(18407944-18408008)
chr5 (226-290)||(23111200-23111264)
chr5 (275-327)||(1856445-1856497)
chr5 (275-327)||(21674415-21674467)
chr5 (236-291)||(19236900-19236955)
chr5 (176-302)||(34830024-34830150)
chr5 (238-291)||(22461158-22461211)
chr5 (238-291)||(22467782-22467835)
[»] chr3 (24 HSPs)
chr3 (8-290)||(14762758-14763040)
chr3 (8-288)||(38310802-38311082)
chr3 (8-288)||(20247791-20248063)
chr3 (8-288)||(24192728-24193009)
chr3 (8-290)||(9534102-9534382)
chr3 (8-291)||(23370505-23370787)
chr3 (6-288)||(55499104-55499385)
chr3 (8-291)||(24933828-24934109)
chr3 (122-314)||(16801444-16801635)
chr3 (82-301)||(41455087-41455304)
chr3 (229-290)||(18929239-18929300)
chr3 (226-290)||(17240513-17240577)
chr3 (275-327)||(24122221-24122273)
chr3 (275-327)||(13967762-13967814)
chr3 (275-327)||(13973237-13973289)
chr3 (31-291)||(10389443-10389702)
chr3 (236-291)||(13302240-13302295)
chr3 (236-291)||(13323787-13323842)
chr3 (177-291)||(10414532-10414646)
chr3 (177-291)||(10421202-10421316)
chr3 (236-291)||(12033444-12033499)
chr3 (236-291)||(13312896-13312951)
chr3 (236-291)||(17131732-17131787)
chr3 (236-291)||(51301589-51301644)
[»] scaffold0026 (2 HSPs)
scaffold0026 (8-307)||(11834-12133)
scaffold0026 (8-291)||(111460-111741)
[»] scaffold1773 (1 HSPs)
scaffold1773 (14-298)||(958-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (14-298)||(49959-50241)
[»] chr4 (13 HSPs)
chr4 (17-301)||(8045822-8046105)
chr4 (14-301)||(11847886-11848179)
chr4 (102-291)||(53483573-53483760)
chr4 (235-327)||(15408139-15408231)
chr4 (101-291)||(27906130-27906321)
chr4 (234-290)||(8834895-8834951)
chr4 (234-290)||(13888641-13888697)
chr4 (207-288)||(14486632-14486713)
chr4 (234-290)||(15245215-15245271)
chr4 (234-285)||(22724691-22724742)
chr4 (276-327)||(43284008-43284059)
chr4 (255-296)||(15747551-15747592)
chr4 (234-290)||(15308120-15308176)
[»] chr6 (24 HSPs)
chr6 (57-290)||(23057760-23057993)
chr6 (8-301)||(29614136-29614429)
chr6 (16-290)||(23838980-23839253)
chr6 (30-327)||(18800233-18800529)
chr6 (15-301)||(10986170-10986455)
chr6 (8-290)||(4477631-4477912)
chr6 (6-288)||(21565214-21565494)
chr6 (156-301)||(930085-930229)
chr6 (8-301)||(12168138-12168428)
chr6 (8-301)||(19287047-19287337)
chr6 (8-301)||(19785859-19786149)
chr6 (8-301)||(19878231-19878521)
chr6 (8-301)||(19884007-19884297)
chr6 (102-291)||(34639986-34640173)
chr6 (102-291)||(34646660-34646847)
chr6 (235-327)||(24512807-24512899)
chr6 (177-291)||(25469704-25469816)
chr6 (94-290)||(9187352-9187550)
chr6 (234-290)||(25397172-25397228)
chr6 (234-290)||(19471335-19471391)
chr6 (234-290)||(25348486-25348542)
chr6 (207-291)||(31252394-31252478)
chr6 (234-288)||(25598643-25598697)
chr6 (276-327)||(933615-933666)
[»] chr8 (17 HSPs)
chr8 (8-288)||(8727735-8728015)
chr8 (8-291)||(44477397-44477678)
chr8 (8-291)||(44492555-44492836)
chr8 (17-301)||(23866396-23866680)
chr8 (16-327)||(27940815-27941127)
chr8 (82-301)||(17054440-17054656)
chr8 (181-290)||(18614217-18614327)
chr8 (235-327)||(14056527-14056619)
chr8 (226-290)||(23482053-23482117)
chr8 (235-323)||(25111976-25112064)
chr8 (275-327)||(30765873-30765925)
chr8 (234-290)||(39364919-39364975)
chr8 (236-290)||(29643386-29643440)
chr8 (236-291)||(24320670-24320725)
chr8 (266-326)||(21325730-21325791)
chr8 (267-326)||(21321132-21321192)
chr8 (234-290)||(21931696-21931752)
[»] chr2 (19 HSPs)
chr2 (8-290)||(19661454-19661734)
chr2 (8-290)||(6483492-6483772)
chr2 (8-290)||(6486959-6487239)
chr2 (6-301)||(26583600-26583892)
chr2 (6-288)||(23089057-23089337)
chr2 (6-288)||(23878781-23879060)
chr2 (6-290)||(23101463-23101745)
chr2 (177-291)||(5706023-5706137)
chr2 (276-327)||(6260135-6260186)
chr2 (226-290)||(23265133-23265197)
chr2 (226-290)||(23280201-23280265)
chr2 (229-290)||(21908353-21908414)
chr2 (283-327)||(19665037-19665081)
chr2 (234-290)||(24661576-24661632)
chr2 (236-291)||(10577-10632)
chr2 (110-301)||(23168288-23168483)
chr2 (110-301)||(23579545-23579740)
chr2 (236-291)||(25180929-25180984)
chr2 (219-300)||(26885166-26885246)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-288)||(14398-14678)
[»] scaffold0924 (1 HSPs)
scaffold0924 (14-301)||(740-1027)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-301)||(111674-111948)
[»] chr1 (12 HSPs)
chr1 (8-290)||(20437024-20437305)
chr1 (82-301)||(41111884-41112100)
chr1 (226-290)||(32651563-32651627)
chr1 (235-290)||(19663517-19663572)
chr1 (226-290)||(18712790-18712854)
chr1 (234-290)||(20805320-20805376)
chr1 (235-290)||(11158093-11158148)
chr1 (234-288)||(10811785-10811839)
chr1 (236-291)||(20851132-20851187)
chr1 (236-291)||(20857759-20857814)
chr1 (236-291)||(21706276-21706331)
chr1 (236-291)||(21710818-21710873)
[»] scaffold0247 (1 HSPs)
scaffold0247 (8-327)||(11116-11433)
[»] scaffold0553 (1 HSPs)
scaffold0553 (8-291)||(10195-10477)
[»] scaffold0544 (1 HSPs)
scaffold0544 (8-291)||(1525-1807)
[»] scaffold0117 (2 HSPs)
scaffold0117 (8-301)||(1887-2179)
scaffold0117 (8-301)||(8564-8856)
[»] scaffold0090 (1 HSPs)
scaffold0090 (14-327)||(17948-18261)
[»] scaffold0058 (1 HSPs)
scaffold0058 (17-301)||(75-356)
[»] scaffold0154 (1 HSPs)
scaffold0154 (94-327)||(30715-30949)
[»] scaffold0476 (1 HSPs)
scaffold0476 (6-288)||(3295-3576)
[»] scaffold0077 (1 HSPs)
scaffold0077 (6-288)||(3624-3904)
[»] scaffold0634 (1 HSPs)
scaffold0634 (8-131)||(3435-3558)
[»] scaffold0796 (2 HSPs)
scaffold0796 (8-296)||(1727-2013)
scaffold0796 (100-296)||(5750-5943)
[»] scaffold0456 (4 HSPs)
scaffold0456 (208-295)||(904-991)
scaffold0456 (208-295)||(8049-8136)
scaffold0456 (51-147)||(806-901)
scaffold0456 (51-147)||(7951-8046)
[»] scaffold0107 (1 HSPs)
scaffold0107 (235-327)||(40495-40587)
[»] scaffold0129 (1 HSPs)
scaffold0129 (179-297)||(45268-45386)
[»] scaffold0019 (1 HSPs)
scaffold0019 (235-324)||(135473-135562)
[»] scaffold0235 (1 HSPs)
scaffold0235 (237-327)||(22556-22646)
[»] scaffold0310 (1 HSPs)
scaffold0310 (235-314)||(17643-17723)
[»] scaffold0222 (1 HSPs)
scaffold0222 (226-290)||(16811-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (226-290)||(116887-116951)
[»] scaffold0124 (1 HSPs)
scaffold0124 (235-290)||(34276-34331)
[»] scaffold0461 (1 HSPs)
scaffold0461 (226-290)||(8-72)
[»] scaffold0249 (1 HSPs)
scaffold0249 (283-327)||(2212-2256)
[»] scaffold0146 (1 HSPs)
scaffold0146 (226-290)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (226-290)||(101928-101992)
[»] scaffold0815 (1 HSPs)
scaffold0815 (239-301)||(1453-1515)
[»] scaffold0261 (1 HSPs)
scaffold0261 (101-301)||(23559-23760)
[»] scaffold2054 (1 HSPs)
scaffold2054 (202-301)||(680-780)
[»] scaffold0609 (1 HSPs)
scaffold0609 (207-291)||(5857-5941)
[»] scaffold0317 (1 HSPs)
scaffold0317 (171-290)||(1321-1441)
[»] scaffold0138 (1 HSPs)
scaffold0138 (234-290)||(12296-12352)
[»] scaffold0139 (1 HSPs)
scaffold0139 (235-290)||(14997-15052)
[»] scaffold0790 (1 HSPs)
scaffold0790 (269-302)||(5487-5520)
[»] scaffold0001 (1 HSPs)
scaffold0001 (219-300)||(493019-493099)
[»] scaffold0348 (2 HSPs)
scaffold0348 (276-324)||(14620-14668)
scaffold0348 (236-291)||(9336-9391)
[»] scaffold0096 (1 HSPs)
scaffold0096 (234-294)||(39503-39563)
[»] scaffold0034 (1 HSPs)
scaffold0034 (101-288)||(73149-73337)
[»] scaffold0127 (1 HSPs)
scaffold0127 (236-291)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (236-291)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (236-290)||(1913-1967)
[»] scaffold0453 (1 HSPs)
scaffold0453 (207-291)||(10550-10634)
[»] scaffold0335 (1 HSPs)
scaffold0335 (234-290)||(2628-2684)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 18873133 - 18873420
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||    
T  18873133 catcaacaacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagca 18873232  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18873233 acaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 18873332  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18873333 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 15167948 - 15168230
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||    
T  15167948 catcaacaacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagca 15168047  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15168048 acaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 15168147  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168148 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 10896073 - 10895795
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||    
T  10896073 catcaacaacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagca 10895974  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||| |||||||||||||||||||||||||| ||||    
T  10895973 acaaagattaagttttcattctgaacattatattacaagagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaat 10895875  T
Q  208 ttatcttcc-aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttac 286  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  10895874 ttatcttccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 14422758 - 14423043
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  14422758 catcaacaacaacaaatacagatcactccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 14422856  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    | |||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||    
T  14422857 atatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaat 14422955  T
Q  208 ttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 294  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14422956 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 12710117 - 12709833
Alignment:
Q  17 caacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagat 115  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| |||||||||||||||| ||||    
T  12710117 caacaatcacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaaca-agat 12710019  T
Q  116 taagttttcattctgaacattatattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatctt 214  Q
    |||||||  |||||||||||||||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||    
T  12710018 taagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttatttt 12709919  T
Q  215 ccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12709918 ccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 13123188 - 13122904
Alignment:
Q  17 caacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagat 115  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| |||||||||||||||| ||||    
T  13123188 caacaatcacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaaca-agat 13123090  T
Q  116 taagttttcattctgaacattatattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatctt 214  Q
    |||||||  |||||||||||||||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||    
T  13123089 taagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttatttt 13122990  T
Q  215 ccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13122989 ccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 16009351 - 16009631
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  |||||||||||||||||||  |||||||| ||||||| |||||||||||| |||||    
T  16009351 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcagtttatgatcacaacaaca 16009449  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||| |||||||||||||||||| |||||| ||||    
T  16009450 gtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccttaacccacaat 16009548  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16009549 ttatcttccaaaaccatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 13743492 - 13743774
Alignment:
Q  17 caacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagatt 116  Q
    ||||||| |||  ||| |||||||| |||||   ||||||||||| |||||| |   ||||||| |||| ||||||||||||||||||| ||||||||||    
T  13743492 caacaatcacatatcactccaccattatacaattattcatcaatttatccaaccaagcataatt-tcaaccaatttatgatcacagcaataacatagatt 13743590  T
Q  117 aagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc 216  Q
    |||| |||| ||||||||  ||| ||||| | |||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  13743591 aagtcttcaatctgaacagcataatacaagaaaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttcc 13743690  T
Q  217 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13743691 aaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 82 - 301
Target Start/End: Complemental strand, 12590850 - 12590633
Alignment:
Q  82 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 180  Q
    |||||||||| ||| || ||||||||||||| ||||||| ||||||||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  12590850 tcaatcaattaatggattacagcaacaacatggattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcatt--ccatcag 12590753  T
Q  181 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 280  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  12590752 aatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 12590654  T
Q  281 ccttaccttagttttgcagaa 301  Q
    |||||||||||||||||||||    
T  12590653 ccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 13007207 - 13007497
Alignment:
Q  8 catcatcaacaacaattacagc-tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaa 105  Q
    ||||| |||||||||||| ||  |||||||||||||| |||  | ||||||||||||| ||||   ||  || | |||||||||| ||| || |||||||    
T  13007207 catcaacaacaacaattatagaatcattccaccatcacacaatatttcatcaattcatacaattcatccaaaat-tcaatcaattcatggattacagcaa 13007305  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    |||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||||||||||||||||||||||  |||    
T  13007306 caacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaactttca 13007402  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
      |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13007403 tcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 288
Target Start/End: Original strand, 16677152 - 16677348
Alignment:
Q  94 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 193  Q
    ||||||||||||||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||| |  | | | ||| |||||||||||||    
T  16677152 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaa 16677251  T
Q  194 ccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  16677252 ccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 288
Target Start/End: Original strand, 17651388 - 17651584
Alignment:
Q  94 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 193  Q
    ||||||||||||||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||| |  | | | ||| |||||||||||||    
T  17651388 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaa 17651487  T
Q  194 ccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  17651488 ccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 21231015 - 21230923
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttccta 21230923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 20311107 - 20311026
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag--ttttgcagaatgattacacagca 314  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||  |||||||||| |||| |||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaaagattgcacagca 20311026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 148619 - 148711
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||  ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  148619 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacaacacaatcagttccta 148711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 290
Target Start/End: Original strand, 13679428 - 13679548
Alignment:
Q  171 ttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgaga 269  Q
    |||| |||| ||||| |||||||||||||  |||| ||| ||| || | ||| ||  |||||| |||||||||| |||||||| || ||||| || || |    
T  13679428 ttcctttcaaaatcagcatcaaaccctaattctcagttttatcatcaagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaa 13679527  T
Q  270 gatagtctcacccttacctta 290  Q
    |||||||||||||||||||||    
T  13679528 gatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||| ||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  255 ttatgattatcgagagatagtctcacccttaccttagttttg 296  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  255 ttatgattatcgagagatagtctcacccttaccttagttttg 296  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  255 ttatgattatcgagagatagtctcacccttaccttagttttg 296  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||| ||||||||| ||||| || || ||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 22750914 - 22751201
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||    
T  22750914 catcaacaacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagca 22751013  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22751014 acaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 22751113  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22751114 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 38144810 - 38144500
Alignment:
Q  15 aacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacataga 114  Q
    |||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  || ||||| |||||||||||||||||||| |||||  |||||    
T  38144810 aacaacaaatacagatcactccaccatcatacaaatcttcatcaattcatccaatcaatcgtaatt-tcaatcaatttatgatcacaacaacagtataga 38144712  T
Q  115 ttaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatctt 214  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| ||    
T  38144711 ttaagttttcattctaaacattacattacaatagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttatttt 38144613  T
Q  215 ccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagca 314  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144612 ccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaatgattacacagca 38144513  T
Q  315 caatcggttccta 327  Q
    |||||||||||||    
T  38144512 caatcggttccta 38144500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 28370335 - 28370055
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||    
T  28370335 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaaca 28370237  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| |||||||  ||||||||||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||||    
T  28370236 gtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaat 28370138  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28370137 ttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 19512160 - 19512441
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  19512160 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 19512258  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| |||||||  |||||| |||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||||    
T  19512259 gtatagattaagttttcattctaaacattacgttacaatagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaat 19512357  T
Q  208 ttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19512358 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 82 - 295
Target Start/End: Original strand, 23528479 - 23528690
Alignment:
Q  82 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 180  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  23528479 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaaactaacatcatccttactcatt--ccatcag 23528576  T
Q  181 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 280  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  23528577 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 23528675  T
Q  281 ccttaccttagtttt 295  Q
    |||||||||||||||    
T  23528676 ccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 22438803 - 22438723
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcagaatgattacacagca 314  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaaagattgcacagca 22438723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 42961566 - 42961658
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||| ||| ||||| || || ||  | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 42961658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 1856497 - 1856445
Alignment:
Q  275 tctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  1856497 tctcacccttaccttagttttgcagaaagattaaacagcacaatcggttccta 1856445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 21674467 - 21674415
Alignment:
Q  275 tctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  21674467 tctcacccttaccttagttttgcagaaagattaaacagcacaatcggttccta 21674415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 34830024 - 34830150
Alignment:
Q  176 ttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 274  Q
    |||| ||||| ||||| |||||||  |||||||| |||||| | |||||| | ||||| |  |||||||||||||||| ||||  ||||| || |||||     
T  34830024 ttcaaaatcagcatcataccctaattctcaattttatcttcaagaactattctattagattgattttcagaaattatacatta-aattattgaaagataa 34830122  T
Q  275 tctcacccttaccttagttttgcagaat 302  Q
    || ||||||||||||||  |||||||||    
T  34830123 tcccacccttaccttagaattgcagaat 34830150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  238 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  238 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 14763040 - 14762758
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||    
T  14763040 catcaacaacaacaattacagatcactccaccatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagca 14762941  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14762940 acaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 14762841  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762840 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 38311082 - 38310802
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||    
T  38311082 catcaacaacaacaattacagatcattccaccttcatacacaaattcatccattcatccaatcactcataattttcaatcaatttatgatcacagcagca 38310983  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38310982 acaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 38310883  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310882 ttatcttccaaaactatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 20248063 - 20247791
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||        ||||| ||||||||| ||||||||||||||||||||||| ||    
T  20248063 catcaacaacaacaattacagatcattccaccatcatacacaaattcatc--------caatcactcataattttcaatcaatttatgatcacagcagca 20247972  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20247971 acaaagattaagttttcattctgaacattatattacaagaaaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 20247872  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20247871 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 24192728 - 24193009
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgat-cacagcaac 106  Q
    ||||| |||||| || ||||| |||||||||||||||||  | ||||||||||| ||||||||  ||||| || ||||||| |||||||| |||||||||    
T  24192728 catcaacaacaagaaatacagatcattccaccatcataccaatattcatcaatttatccaatcaatcatattt-tcaatcagtttatgattcacagcaac 24192826  T
Q  107 aacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa 206  Q
    | ||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24192827 agcatagattaagttttcattctgaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa 24192926  T
Q  207 tttatcttcc-aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24192927 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 9534102 - 9534382
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||  |||||    
T  9534102 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacgacaaca 9534200  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| | || ||||||||||||||||||||||||||||||    
T  9534201 gtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattccact-cagaatcatcatcaaaccctaaccctcaat 9534299  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9534300 ttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 23370787 - 23370505
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  23370787 catcaacaacaacaaatacagatcactccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 23370689  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||    
T  23370688 gtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaat 23370590  T
Q  208 ttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  23370589 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 55499385 - 55499104
Alignment:
Q  6 gacatcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaa 105  Q
    ||||||| |||||||||| |||| |||||||||||||||||| || || ||||||||||||||||  | ||| || ||||||||||||||||||||||||    
T  55499385 gacatcaacaacaacaat-acagatcattccaccatcatacaaaacttgatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaa 55499288  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    |   |||||||||| |||||||| |||||| | ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  55499287 ctgtatagattaagatttcattccgaacatcacattacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctca 55499189  T
Q  206 a-tttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattat-gattatcgagagatagtctcacccttacct 288  Q
    | |||||| | |||   || ||| ||||||||||||| | ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  55499188 attttatcct-caaggttaagcagttaggtcaattttcccgaaattacatattatctattaatgagagatagtctcacccttacct 55499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 24934109 - 24933828
Alignment:
Q  8 catcatcaacaacaattacagc-tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaa 105  Q
    ||||| || ||||||||||||  |||||| ||||||||||| | |||||||||||||| ||||   ||| || | |||||||||| ||| ||  ||||||    
T  24934109 catcaacagcaacaattacagaatcattctaccatcatacaaatattcatcaattcatacaatacatcaaaaat-tcaatcaattaatggattgcagcaa 24934011  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    |||||| ||||||| ||||||||| ||||||| ||| | | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||   |||    
T  24934010 caacatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaattttca 24933913  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
      |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24933912 tattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 122 - 314
Target Start/End: Complemental strand, 16801635 - 16801444
Alignment:
Q  122 ttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaa 220  Q
    |||||||| ||||| | |||||| || | |||||||||| ||||| |  ||| | ||| |||||||||||| |||||||| ||||||| |||||| |||     
T  16801635 ttcattctaaacatcacattacagcatatttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaattttatcttcaaaag 16801537  T
Q  221 ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagca 314  Q
    ||| ||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16801536 ctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttaccttagttttgcagaaggattacacagca 16801444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 301
Target Start/End: Complemental strand, 41455304 - 41455087
Alignment:
Q  82 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 180  Q
    |||||||||| ||| || |||||||| | || ||||||| |||||||||  |||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  41455304 tcaatcaattcatggattacagcaaccatatggattaagatttcattcttgacattaaatttcaagaaaactaacatcatctttactcatt--ccatcag 41455207  T
Q  181 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 280  Q
    |||||||||||| ||||||   |||   ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  41455206 aatcatcatcaatccctaattttcatcctattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 41455108  T
Q  281 ccttaccttagttttgcagaa 301  Q
    |||||||||||||||||||||    
T  41455107 ccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  229 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 24122273 - 24122221
Alignment:
Q  275 tctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  24122273 tctcacccttaccttagttttgcagaaagattaaacagcacaatcggttccta 24122221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 13967814 - 13967762
Alignment:
Q  275 tctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  13967814 tctcacccttaccttagttttgcagaaagataaaacagcacaatcggttccta 13967762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 13973289 - 13973237
Alignment:
Q  275 tctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  13973289 tctcacccttaccttagttttgcagaaagataaaacagcacaatcggttccta 13973237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 10389702 - 10389443
Alignment:
Q  31 cattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaacaacatagattaagttttcattct 129  Q
    ||||| |||| |||||| | |||||||||||||| ||||   ||| || | |||||||||| ||| ||  |||||||||||| | ||||| |||||||||    
T  10389702 cattctaccaacatacaaatattcatcaattcatacaattcatcaaaaat-tcaatcaattaatggattgcagcaacaacatgggttaagctttcattct 10389604  T
Q  130 gaacattatattacaacagaat-taacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaa 228  Q
     ||| ||| ||| | | | ||  |||||| ||  |||||||||  || |||||||||||||||||||||||   |||  ||||  |  |||||||| |||    
T  10389603 taacgttaaattccgagaaaaactaacatcatctttacccatt--ccatcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaa 10389506  T
Q  229 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    |||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10389505 ttagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 10414646 - 10414532
Alignment:
Q  177 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtc 276  Q
    |||||||||||||||||||||||   |||  ||||  |  |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| ||    
T  10414646 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10414547  T
Q  277 tcacccttaccttag 291  Q
     ||||||||||||||    
T  10414546 ccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 10421316 - 10421202
Alignment:
Q  177 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtc 276  Q
    |||||||||||||||||||||||   |||  ||||  |  |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| ||    
T  10421316 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10421217  T
Q  277 tcacccttaccttag 291  Q
     ||||||||||||||    
T  10421216 ccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    |||||||| |||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 12133 - 11834
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||    
T  12133 catcaacaacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataaatttcaatcaacttatgatcacagcaaca 12034  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  12033 acaaagattaagttttcattctgaagattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaat 11934  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgatta 307  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  11933 ttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaagatta 11834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 111460 - 111741
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  111460 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 111558  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||    
T  111559 gtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaat 111657  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  111658 ttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 958 - 1240
Alignment:
Q  14 caacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatag 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||    
T  958 caacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaaca-ag 1056  T
Q  114 attaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 213  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |    
T  1057 attaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattt 1156  T
Q  214 tccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgca 298  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1157 tccaaaactatgcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 49959 - 50241
Alignment:
Q  14 caacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatag 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||    
T  49959 caacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaaca-ag 50057  T
Q  114 attaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 213  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |    
T  50058 attaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattt 50157  T
Q  214 tccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgca 298  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50158 tccaaaactatgcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 8046105 - 8045822
Alignment:
Q  17 caacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagatt 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||  ||||    
T  8046105 caacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaaggatt 8046006  T
Q  117 aagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc 216  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||  || ||||||||||||||||||||||| ||||    
T  8046005 aagttttcattctgaacattatattacaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttcc 8045906  T
Q  217 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8045905 aaaactatgcaattaggtcaa-tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 11847886 - 11848179
Alignment:
Q  14 caacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatag 113  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||    
T  11847886 caacaacaattacagatcattccatcatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaag 11847985  T
Q  114 attaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa------t 207  Q
    ||||||||||||||||||||||||||||| || || ||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||      |    
T  11847986 attaagttttcattctgaacattatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattt 11848085  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    | || || ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11848086 taatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 291
Target Start/End: Original strand, 53483573 - 53483760
Alignment:
Q  102 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 201  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||      
T  53483573 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaatt 53483670  T
Q  202 ctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
     ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  53483671 ttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 15408139 - 15408231
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| | ||||||| |||| ||||| | ||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaaagattgcacagaaaaatcggttccta 15408231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 291
Target Start/End: Original strand, 27906130 - 27906321
Alignment:
Q  101 agcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaac 200  Q
    |||||||  ||||||||||   |||| | |||||| | ||||||||| | | ||||||||| |||| | ||| | |||| ||||| ||||| |||||||     
T  27906130 agcaacattatagattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaaatcaacatcacaccctaat 27906229  T
Q  201 cctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
     |||||||| |||||| | |||||| | ||||  | ||||||||||||||||| |||||||| || || ||||| || |||||||| |||||    
T  27906230 tctcaattttatcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaagataatcccacccttatcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 14486632 - 14486713
Alignment:
Q  207 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    ||||||||| | ||| || ||||| | | ||||||||||||||||| |||||||| || ||  |||||||||||||||||||    
T  14486632 tttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 285  Q
    |||||||||||||||| || | ||| ||||| ||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 43284059 - 43284008
Alignment:
Q  276 ctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||| ||||||||| |||| ||||||  ||||||||||||    
T  43284059 ctcacccttaccttagatttgcagaaagattgcacagcgaaatcggttccta 43284008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  255 ttatgattatcgagagatagtctcacccttaccttagttttg 296  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 57 - 290
Target Start/End: Original strand, 23057760 - 23057993
Alignment:
Q  57 caattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaaca 156  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  23057760 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaaca 23057859  T
Q  157 tgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagatt 256  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23057860 tgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagatt 23057959  T
Q  257 atgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||||||||||||||||||    
T  23057960 atgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 29614429 - 29614136
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||  |||||| | |||||||| |||||||||||||||||    
T  29614429 catcaacaacaacacttacagattattccaccatcatacacaaattcatcaattcatccaatcattcataaatttcaatcaagttatgatcacagcaaca 29614330  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||| ||||||  | ||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  29614329 acaaagattaagttttcattctaaacatt-caatacaagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaat 29614231  T
Q  208 tta-tcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29614230 ttatttttccaaaattatgcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 29614136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 23838980 - 23839253
Alignment:
Q  16 acaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagat 115  Q
    ||||||| ||||| |||||||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  ||||||    
T  23838980 acaacaaatacagatcattccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagat 23839078  T
Q  116 taagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttc 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  23839079 taagttttcattctgaacattacattacaacagaattaacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaatttatcttc 23839177  T
Q  216 caaa-actatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23839178 caaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 18800233 - 18800529
Alignment:
Q  30 tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattct 129  Q
    |||||||||||||||||  || |||||||||||||||||||  | ||| || ||||||||||| |||||||| |||||| |||||||||| ||||||| |    
T  18800233 tcattccaccatcataccaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacaacaacaatatagattaagatttcatttt 18800331  T
Q  130 gaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaa 228  Q
    |||||| | |||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  18800332 gaacatcacattacaacagaattaacatgatcattactcatt-ccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaa 18800430  T
Q  229 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  18800431 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcagaaggattacacagcaaaatcggttccta 18800529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 10986455 - 10986170
Alignment:
Q  15 aacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacataga 114  Q
    |||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  || ||||| |||||||||||||||||||| |||||  |||||    
T  10986455 aacaacaaatacagatcactccaccatcatacaaatcttcatcaattcatccaatcaatcgtaatt-tcaatcaatttatgatcacaacaacagtataga 10986357  T
Q  115 ttaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatctt 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  10986356 ttaagttttcattctgaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatctt 10986258  T
Q  215 cc-aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||    
T  10986257 ccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 4477631 - 4477912
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| ||| |||||||||||||| |  || ||||| ||||||||||  |||||||| |||||||||||||||||||| |||||    
T  4477631 catcaacaacaacaaatacagatcactccaccatcatacaaatctttatcaaatcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 4477729  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    | |||||||||||||||||||| ||||||| ||||||||||||||| |||||| | |||||||| |||| ||||||||||||||||||||||||| ||||    
T  4477730 atatagattaagttttcattctaaacattacattacaacagaattagcatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaat 4477828  T
Q  208 ttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4477829 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 21565494 - 21565214
Alignment:
Q  6 gacatcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaa 105  Q
    ||||||| |||||||||| |||| |||||||||||||||||| || |||||||||||||||||||  | ||| || ||||||||||||||||||||||||    
T  21565494 gacatcaacaacaacaat-acagatcattccaccatcatacagaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaa 21565397  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    ||  |||||||||| |||||||| |||| | | ||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  21565396 cagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctca 21565298  T
Q  206 a-tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattat-gattatcgagagatagtctcacccttacct 288  Q
    | |||||| | |||   || |||||||||||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  21565297 attttatcct-caaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 930229 - 930085
Alignment:
Q  156 atgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagat 255  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||    
T  930229 atgatcattacccatt-cccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagat 930131  T
Q  256 tatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  930130 tatgattattgagagatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 12168138 - 12168428
Alignment:
Q  8 catcatcaacaacaattacagc-tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaa 105  Q
    ||||| |||||||||||| ||  |||||||||||||| |||  | ||||||||||||| ||||   ||  || | |||||||||| ||| || |||||||    
T  12168138 catcaacaacaacaattatagaatcattccaccatcacacaatatttcatcaattcatacaattcatccaaaat-tcaatcaattcatggattacagcaa 12168236  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    |||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||||||||||||||||||||||  |||    
T  12168237 caacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaactttca 12168333  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
      |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12168334 tcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 12168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 19287047 - 19287337
Alignment:
Q  8 catcatcaacaacaattacagc-tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaa 105  Q
    ||||| |||||||||||| ||  |||||||||||||| |||  | ||||||||||||| ||||   ||  || | |||||||||| ||| || |||||||    
T  19287047 catcaacaacaacaattatagaatcattccaccatcacacaatatttcatcaattcatacaattcatccaaaat-tcaatcaattcatggattacagcaa 19287145  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    |||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||||||||||||||||||||||  |||    
T  19287146 caacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaactttca 19287242  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
      |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19287243 tcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 19786149 - 19785859
Alignment:
Q  8 catcatcaacaacaattacagc-tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaa 105  Q
    ||||| |||||||||||| ||  |||||||||||||| |||  | ||||||||||||| ||||   ||  || | |||||||||| ||| || |||||||    
T  19786149 catcaacaacaacaattatagaatcattccaccatcacacaatatttcatcaattcatacaattcatccaaaat-tcaatcaattcatggattacagcaa 19786051  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    |||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||||||||||||||||||||||  |||    
T  19786050 caacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaactttca 19785954  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
     ||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19785953 ttttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 19785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 19878231 - 19878521
Alignment:
Q  8 catcatcaacaacaattacagc-tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaa 105  Q
    ||||| |||||||||||| ||  |||||||||||||| |||  | ||||||||||||| ||||   ||  || | |||||||||| ||| || |||||||    
T  19878231 catcaacaacaacaattatagaatcattccaccatcacacaatatttcatcaattcatacaattcatccaaaat-tcaatcaattcatggattacagcaa 19878329  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    |||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||||||||||||||||||||||  |||    
T  19878330 caacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaactttca 19878426  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
      |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19878427 tcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 19878521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 19884007 - 19884297
Alignment:
Q  8 catcatcaacaacaattacagc-tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaa 105  Q
    ||||| |||||||||||| ||  |||||||||||||| |||  | ||||||||||||| ||||   ||  || | |||||||||| ||| || |||||||    
T  19884007 catcaacaacaacaattatagaatcattccaccatcacacaatatttcatcaattcatacaattcatccaaaat-tcaatcaattcatggattacagcaa 19884105  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    |||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||||||||||||||||||||||  |||    
T  19884106 caacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaactttca 19884202  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
      |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  19884203 tcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccctaaccttagttttgcagaa 19884297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 291
Target Start/End: Complemental strand, 34640173 - 34639986
Alignment:
Q  102 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 201  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||| ||||||||||||||||      
T  34640173 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaaccatcatcaaaccctaatt 34640076  T
Q  202 ctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
     ||   |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34640075 ttcttattattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 102 - 291
Target Start/End: Complemental strand, 34646847 - 34646660
Alignment:
Q  102 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 201  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||| ||||||||||||||||      
T  34646847 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaaccatcatcaaaccctaatt 34646750  T
Q  202 ctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
     ||   |||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34646749 ttcttattattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 24512899 - 24512807
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||| ||||||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaaagattgcacagcaaaatcggttccta 24512807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 25469816 - 25469704
Alignment:
Q  177 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtc 276  Q
    ||||||| |||||||||||||||   |||  |||| ||||||||| || ||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  25469816 tcagaattatcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtc 25469719  T
Q  277 tcacccttaccttag 291  Q
    |||||||||||||||    
T  25469718 tcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 290
Target Start/End: Original strand, 9187352 - 9187550
Alignment:
Q  94 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 193  Q
    |||||||| |||||  ||||||||||   |||||||||||| || ||||||||| | | ||||||||| ||||    |||| |||| ||||| ||||||     
T  9187352 tgatcacaacaacattatagattaagaaatcattctgaacactaaattacaacacattaaacatgattcttacatcattcctttcaaaatcagcatcaa- 9187450  T
Q  194 ccctaaccctcaattt--atcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||  | ||||||  || ||| | ||| || ||||||| || ||||| ||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  9187451 ccctaattcccaatttttatattcaagaacaattcaattagatctatttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 31252394 - 31252478
Alignment:
Q  207 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || ||  | ||||| |||||||||||||||||    
T  31252394 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    |||||||||||||| |||| |||||||| || ||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 933666 - 933615
Alignment:
Q  276 ctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||| ||||||||| |||| || |||| ||||||||||||    
T  933666 ctcacccttaccttagatttgcagaaagattgcatagcaaaatcggttccta 933615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 8728015 - 8727735
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||    
T  8728015 catcaacaacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacaacaaca 8727916  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | ||| ||||||||||| |||||||||||||||||||    
T  8727915 gtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaataccca-tacccctcagaatcatcgtcaaaccctaaccctcaat 8727817  T
Q  208 ttatcttcc-aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  8727816 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 44477397 - 44477678
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  44477397 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 44477495  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| |||||||  ||||||||||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||||    
T  44477496 gtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaat 44477594  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44477595 ttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 44492555 - 44492836
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  44492555 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 44492653  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| |||||||  ||||||||||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||||    
T  44492654 gtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaat 44492752  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44492753 ttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 23866396 - 23866680
Alignment:
Q  17 caacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagat 115  Q
    ||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| ||||| |||||||||| ||||    
T  23866396 caacaatcacagattattccaccatcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcagagcaacaaca-agat 23866494  T
Q  116 taagttttcattctgaacattatattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatctt 214  Q
    |||||||  |||||||||||||||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||    
T  23866495 taagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttatttt 23866594  T
Q  215 ccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23866595 ccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 23866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 27941127 - 27940815
Alignment:
Q  16 acaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagat 115  Q
    ||||||| || || ||| |||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||| | |||||  ||||||    
T  27941127 acaacaaatatagatcactccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcataacaacagtatagat 27941029  T
Q  116 taagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat--ttatct 213  Q
    ||| |||||||||||||||||| |||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||  | ||||  |||| |    
T  27941028 taaattttcattctgaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaattcccaattcttattt 27940930  T
Q  214 tccaa-aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacag 312  Q
    | ||| ||| || | | |    |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||||||||||||    
T  27940929 ttcaagaacaattctaatcaaacaattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacag 27940830  T
Q  313 cacaatcggttccta 327  Q
    |||||||||||||||    
T  27940829 cacaatcggttccta 27940815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 82 - 301
Target Start/End: Original strand, 17054440 - 17054656
Alignment:
Q  82 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 180  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  17054440 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 17054536  T
Q  181 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 280  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  17054537 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 17054635  T
Q  281 ccttaccttagttttgcagaa 301  Q
    ||||||||| |||||||||||    
T  17054636 ccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 290
Target Start/End: Original strand, 18614217 - 18614327
Alignment:
Q  181 aatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 279  Q
    ||||| ||| |||||||||  |||||||| |||||| | ||| || ||||| | ||||||||||||||||||| || |||||||| ||||||||||||||    
T  18614217 aatcagcataaaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctca 18614316  T
Q  280 cccttacctta 290  Q
    |||||||||||    
T  18614317 cccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 14056619 - 14056527
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| ||||||||| |||| |||| || ||||||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaaagattgcacaacaaaatcggttccta 14056527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 25111976 - 25112064
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggtt 323  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||| |||| |||| |||| || ||||||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaaagattgcacaacaaaatcggtt 25112064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 30765925 - 30765873
Alignment:
Q  275 tctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  30765925 tctcacccttaccttagttttgcagaaagataaaacagcacaatcggttccta 30765873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||| | ||||||||||| || ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 21325791 - 21325730
Alignment:
Q  266 gagagatagtctcacccttaccttagttttgcagaatg-attacacagcacaatcggttcct 326  Q
    ||||| ||| |||||||||||||||| ||||||||| | ||| ||||||| |||||||||||    
T  21325791 gagagttagcctcacccttaccttagatttgcagaaagaattgcacagcaaaatcggttcct 21325730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 21321192 - 21321132
Alignment:
Q  267 agagatagtctcacccttaccttagttttgcagaatg-attacacagcacaatcggttcct 326  Q
    |||| ||||||| |||||||||||| ||||||||| | ||| ||||||| |||||||||||    
T  21321192 agagttagtctcgcccttaccttagatttgcagaaagaattgcacagcaaaatcggttcct 21321132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 19661734 - 19661454
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  19661734 catcaacaacaacaaatacagatcactccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 19661636  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    | |||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||    
T  19661635 atatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaat 19661537  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19661536 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 6483492 - 6483772
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||    
T  6483492 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaaca 6483590  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| |||||||  ||||||||||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||||    
T  6483591 gtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaat 6483689  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6483690 ttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 6486959 - 6487239
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||    
T  6486959 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaaca 6487057  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| |||||||  ||||||||||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||||    
T  6487058 gtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaat 6487156  T
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6487157 ttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 26583600 - 26583892
Alignment:
Q  6 gacatcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaa 105  Q
    ||||||| |||||||||| |||| |||||||||||||||||| || |||| |||||||||||| |  |  |||||   | |||| || ||||||||||||    
T  26583600 gacatcaacaacaacaat-acagatcattccaccatcatacaaaatttcaccaattcatccaaccaattctaattacaattcaaattgtgatcacagcaa 26583698  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    ||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||    
T  26583699 cattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattaccc-tttcccctcagaatcatcatcaagccctaaccctca 26583797  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26583798 atttattttccaaaactatgcaattaggtcaa-tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 26583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 23089337 - 23089057
Alignment:
Q  6 gacatcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaa 105  Q
    ||||||| |||||||||| |||| |||||||||||||||||| || |||||||||||||||||||  | ||| || ||||||||||||||||||||||||    
T  23089337 gacatcaacaacaacaat-acagatcattccaccatcatacagaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaa 23089240  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    ||  |||||||||| |||||||| |||| | | ||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  23089239 cagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctca 23089141  T
Q  206 a-tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattat-gattatcgagagatagtctcacccttacct 288  Q
    | |||||| | |||   || |||||||||||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  23089140 attttatcct-caaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 23878781 - 23879060
Alignment:
Q  6 gacatcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaa 105  Q
    ||||||| |||||||||| |||| |||||||||||||||||| || |||||||||||||||||||  |  || || |||||||||||||||||||| |||    
T  23878781 gacatcaacaacaacaat-acagatcattccaccatcatacaaaacttcatcaattcatccaatcaattctattt-tcaatcaatttatgatcacaacaa 23878878  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    ||  |||||||||| ||||||||||||||| | ||||||||| |||||||||||| |||||||  ||||| |||||||||||| | ||||||||||||||    
T  23878879 cagtatagattaagatttcattctgaacatcacattacaacataattaacatgatcattaccccattcccctcagaatcatcaac-aaccctaaccctca 23878977  T
Q  206 attt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    |||| ||| | |||   || |||||||||||||||||  ||||||||| || || ||||  |||||||||||||||||||||||    
T  23878978 atttaatcct-caaggttaagcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 23101745 - 23101463
Alignment:
Q  6 gacatcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaa 105  Q
    ||||||| |||||||||| || | |||||||||||||||||| || ||||| |||||||||||||  | ||| || |||||||||||||||||||| |||    
T  23101745 gacatcaacaacaacaat-actgatcattccaccatcatacagaacttcatgaattcatccaatcaattatattt-tcaatcaatttatgatcacaacaa 23101648  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    ||  |||||||||| |||||||| |||| | | ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  23101647 cagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctca 23101549  T
Q  206 a-tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattat-gattatcgagagatagtctcacccttacctta 290  Q
    | |||||| | |||   ||  ||||||||||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||||    
T  23101548 attttatcct-caaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 5706137 - 5706023
Alignment:
Q  177 tcagaatcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagt 275  Q
    |||||||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||  ||||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagt 5706039  T
Q  276 ctcacccttaccttag 291  Q
    ||||||||||||||||    
T  5706038 ctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 6260186 - 6260135
Alignment:
Q  276 ctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6260186 ctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 6260135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  229 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 19665081 - 19665037
Alignment:
Q  283 ttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19665081 ttaccttagttttgcagaatgattacacagcacaatcggttccta 19665037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 301
Target Start/End: Complemental strand, 23168483 - 23168288
Alignment:
Q  110 atagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt 209  Q
    ||||||||||   |||| |||||||| | ||||||||| | | ||||||| | |||| | ||| | |||| ||||| ||||| |||||||  ||||||||    
T  23168483 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaattctcaattt 23168384  T
Q  210 ----atcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
        |||||| |||||||| | ||||| | |||||| ||||||||||| |||||||| |  || ||||| || ||||||||||||||  ||||||||    
T  23168383 ttttatcttc-aaaactattctattagattaatttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaa 23168288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 301
Target Start/End: Complemental strand, 23579740 - 23579545
Alignment:
Q  110 atagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt 209  Q
    ||||||||||   |||| |||||||| | ||||||||| | | ||||||| | |||| | ||| | |||| ||||| ||||| |||||||  ||||||||    
T  23579740 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaattctcaattt 23579641  T
Q  210 ----atcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
        |||||| |||||||| | ||||| | |||||| ||||||||||| |||||||| |  || ||||| || ||||||||||||||  ||||||||    
T  23579640 ttttatcttc-aaaactattctattagattaatttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaa 23579545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 26885166 - 26885246
Alignment:
Q  219 aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 300  Q
    |||||| | ||||| | ||||||||||||||||| |||| |||||| || ||||| || ||||||||||||||  |||||||    
T  26885166 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttagaattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 14678 - 14398
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||  ||||| || ||||||| ||||||||||||||||||    
T  14678 catcaacaacaacaaatacagatcattccaccatcataccaatattcatcaatttatccaatcaatcatattt-tcaatcagtttatgatcacagcaaca 14580  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
     |||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14579 gcatagattaagttttcattcggaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 14480  T
Q  208 ttatcttcc-aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14479 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 1027 - 740
Alignment:
Q  14 caacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatag 113  Q
    |||||||||| |||  || |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||||| |||||||| ||    
T  1027 caacaacaatcacaaatctttccaccatcatacacaaattcatcaattcatccaatcactcataaatttcaatcagtttatgatcacatcaacaaca-ag 929  T
Q  114 attaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 213  Q
    |||||||||| || |||||||||||||||||| || |||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |    
T  928 attaagtttttatcctgaacattatattacaagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattt 829  T
Q  214 tccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  828 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 111674 - 111948
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||| ||    
T  111674 catcaacaacaacaattacagatcattccaccatcatacacaaattcatcaatt--------------------tcaatcaatttatgatcacagcagca 111753  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  111754 acaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 111853  T
Q  208 ttatcttccaaaactatgcaattaggtcaa-ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  111854 ttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 111948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 20437305 - 20437024
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  20437305 catcaacaacaacaaatacagatcattccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 20437207  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||    
T  20437206 gtatagattaagttttcattctgaacattacattacaacataattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaat 20437108  T
Q  208 ttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20437107 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 301
Target Start/End: Original strand, 41111884 - 41112100
Alignment:
Q  82 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 180  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||   |  |||| ||||  || ||||    
T  41111884 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacaccgtctttactcatt--ccatcag 41111980  T
Q  181 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 280  Q
    ||||||||||||||||||||  |||  |||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  41111981 aatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 41112079  T
Q  281 ccttaccttagttttgcagaa 301  Q
    |||||||||||||||||||||    
T  41112080 ccttaccttagttttgcagaa 41112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 11116 - 11433
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| |||||||||| |||| ||| |||||||||||||| || |||||||||||||||||||  | ||| || ||||||||||| ||||||||||||||    
T  11116 catcaacaacaacaat-acagatcaatccaccatcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacagcaaca 11213  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      || ||||||| ||||||| ||||||| | |||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||    
T  11214 gtatggattaagatttcattttgaacatcacattacaacagaattaacatgatcattactcatt-ccctccagaatcatcatcaaaccctaaccctcaat 11312  T
Q  208 t-tatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgatt 306  Q
    | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  11313 tctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaggatt 11412  T
Q  307 acacagcacaatcggttccta 327  Q
    |||||||| ||||||||||||    
T  11413 acacagcaaaatcggttccta 11433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 10477 - 10195
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  10477 catcaacaacaacaaatacagatcactccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 10379  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||    
T  10378 gtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaat 10280  T
Q  208 ttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  10279 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 1807 - 1525
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  1807 catcaacaacaacaaatacagatcactccaccatcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaaca 1709  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
      |||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||    
T  1708 gtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaat 1610  T
Q  208 ttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1609 ttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 2179 - 1887
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| |||||||| |||||| | ||||||||||| ||||||||||||||||||||| ||||| ||||| | | |||||||| |||||||||||||||||    
T  2179 catcaacaacaacatttacagattattccaccatcgtacacaaattcatcaattcatacaatcactcatcaatttcaatcaagttatgatcacagcaaca 2080  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    |||  ||||||||||||||| ||||||||| ||||||| ||||||||||| || ||||||||||  || ||| ||||||||||||||||||||||||||     
T  2079 acaaggattaagttttcattatgaacattaaattacaagagaattaacataatcattacccatt--ccatcaaaatcatcatcaaaccctaaccctcaaa 1982  T
Q  208 ttatcttccaaaactatgcaattaggtcaa-ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  1981 ttattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 8856 - 8564
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| |||||||| |||||| | ||||||||||| ||||||||||||||||||||| ||||| || || | | |||||||| |||||||||||||||||    
T  8856 catcaacaacaacatttacagattattccaccatcgtacacaaattcatcaattcatacaatcacttatcaatttcaatcaagttatgatcacagcaaca 8757  T
Q  108 acatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaat 207  Q
    |||  ||||||||||||||| ||||||||| ||||||| ||||||||||| || ||||||||||  || ||| ||||||||||||||||||||||||||     
T  8756 acaaggattaagttttcattttgaacattaaattacaagagaattaacataatcattacccatt--ccatcataatcatcatcaaaccctaaccctcaaa 8659  T
Q  208 ttatcttccaaaactatgcaattaggtcaa-ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8658 ttattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 17948 - 18261
Alignment:
Q  14 caacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatag 113  Q
    ||||||||||||||| ||||  |||||||||||| | ||||||||||| ||||||||  ||  |||| |||||||||| |||||||||||||||||||||    
T  17948 caacaacaattacagatcatcacaccatcatacaaatattcatcaatttatccaatcaatccaaatt-tcaatcaattcatgatcacagcaacaacatag 18046  T
Q  114 attaagttttcattctgaacattatattacaa-cagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 212  Q
     |||||||||||||||| |||| | ||||||| ||||||||||||||  |||||| ||||||| | ||||||||||| ||||| |||||||||||||||     
T  18047 gttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgttagaatcatcattaaaccttaaccctcaatttatt 18145  T
Q  213 ttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacaca 311  Q
    |||| ||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18146 ttcctaaagctaagcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaatgattacaca 18245  T
Q  312 gcacaatcggttccta 327  Q
     |||||||||||||||    
T  18246 acacaatcggttccta 18261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 75 - 356
Alignment:
Q  17 caacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagatt 116  Q
    |||||| ||||| ||| |||||||| |||||   ||||||||||| |||||| |  |||||||| |||| ||||||||||||||| ||| ||||||||||    
T  75 caacaaatacagatcactccaccattatacaattattcatcaatttatccaaccaatcataatt-tcaaccaatttatgatcacatcaataacatagatt 173  T
Q  117 aagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc 216  Q
    |||| |||| ||||||||  ||| ||||| | |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  174 aagtcttcaatctgaacaccataatacaagaaaattaacatgatcattacccattcccct-cagaatcatcatcaaaccctaaccctcaatttattttcc 272  T
Q  217 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  273 aaaactatgcaattaggtcaa-tttcagaaattatagattatggttattgagagatagtctcacccttaccttagttttgcagaa 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 94 - 327
Target Start/End: Original strand, 30715 - 30949
Alignment:
Q  94 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 193  Q
    |||||||| |||||  |||||||| |  ||||||||| |||| |  |||||||| | ||||||||||  |||| |  ||||| ||| |||||||||||||    
T  30715 tgatcacatcaacattatagattaggaattcattctgcacatcactttacaacatatttaacatgatcgttacaccattcccctcaaaatcatcatcaaa 30814  T
Q  194 ccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagt 292  Q
    |||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30815 ccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagt 30914  T
Q  293 tttgcagaatgattacacagcacaatcggttccta 327  Q
    ||||||||| |||||||||||| ||||| ||||||    
T  30915 tttgcagaaggattacacagcaaaatcgattccta 30949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 3576 - 3295
Alignment:
Q  6 gacatcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaa 105  Q
    ||||||| |||||||||| |||| |||||||||||||||||| || |||||||||||||||||||  | ||| || ||||||||||| ||||||||||||    
T  3576 gacatcaacaacaacaat-acagatcattccaccatcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacagcaa 3479  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgatt-attacccatttcccttcagaatcatcatcaaaccctaaccctc 204  Q
    ||  |||||||||| ||||||||||||||| | ||||||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  3478 cagtatagattaagatttcattctgaacatcacattacaacaaaattaacatgattcattaccca-ttcccctcagaatcatcatcaaaccctaaccctc 3380  T
Q  205 aa-tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattat-gattatcgagagatagtctcacccttacct 288  Q
    || ||||||  ||||   || |||||||||||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  3379 aattttatc-cccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 3904 - 3624
Alignment:
Q  6 gacatcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaa 105  Q
    ||||||| |||||||||| |||  |||||||||||||||||| || |||||||||||||||||||  | ||| || |||||||||||||||||||| |||    
T  3904 gacatcaacaacaacaat-acaaatcattccaccatcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacaacaa 3807  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    ||  |||||||||| |||||||| |||||| | ||||||||| |||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||    
T  3806 cagtatagattaagatttcattccgaacatcacattacaacataattaacatgatcattaccca-tccccctcagaatcatcatcaaaccctaaccctca 3708  T
Q  206 a-tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattat-gattatcgagagatagtctcacccttacct 288  Q
    | |||||| | |||   || |||||||||||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  3707 attttatcct-caaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 3435 - 3558
Alignment:
Q  8 catcatcaacaacaattacagctcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaaca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||    
T  3435 catcaacaacaacaattacagatcattccaccatcatacacaaattcatcaattcatccaatcacccataaatttcaatcaatttatgatcacagcaaca 3534  T
Q  108 acatagattaagttttcattctga 131  Q
    ||| ||||||||||||||||||||    
T  3535 acaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 2013 - 1727
Alignment:
Q  8 catcatcaacaacaattacagc-tcattccaccatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaa 105  Q
    ||||| |||||||||||||||  |||||| |||||||| |  | |||||||||||||| ||||   ||| || | ||||||| || ||| ||  ||||||    
T  2013 catcaacaacaacaattacagaatcattctaccatcatcccaatattcatcaattcatacaattcatcacaaat-tcaatcagttaatggattgcagcaa 1915  T
Q  106 caacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca 205  Q
    || ||| ||||||| ||||||||| ||||||| ||| | | | || |||||| ||  |||| ||||  || ||||||||||||||||||||||||  |||    
T  1914 cagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatccttactcatt--ccatcagaatcatcatcaaaccctaactttca 1817  T
Q  206 atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 296  Q
      |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1816 tattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 100 - 296
Target Start/End: Complemental strand, 5943 - 5750
Alignment:
Q  100 cagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaa 199  Q
    |||||||| ||| ||||||| ||||||||| ||||||| ||| | | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||    
T  5943 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatccttactcatt--ccatcagaatcatcatcaaaccctaa 5846  T
Q  200 ccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 296  Q
    |  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5845 ctttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 904 - 991
Alignment:
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 295  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 8049 - 8136
Alignment:
Q  208 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 295  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 806 - 901
Alignment:
Q  51 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaaca 147  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  806 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaaca 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 7951 - 8046
Alignment:
Q  51 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaaca 147  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  7951 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaaca 8046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 40587 - 40495
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttccta 40495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 45386 - 45268
Alignment:
Q  179 agaatcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtct 277  Q
    |||||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtct 45288  T
Q  278 cacccttaccttagttttgc 297  Q
    |||||||||||||| |||||    
T  45287 cacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 135473 - 135562
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttc 324  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||| ||||| |||| ||||||| |||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaaagattgcacagcaaaatcggttc 135562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 22646 - 22556
Alignment:
Q  237 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||||  ||| ||||||| ||||||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaaatattgcacagcaaaatcggttccta 22556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 17643 - 17723
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcagaatgattacacagca 314  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaaagattgcacagca 17723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 2256 - 2212
Alignment:
Q  283 ttaccttagttttgcagaatgattacacagcacaatcggttccta 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2256 ttaccttagttttgcagaatgattacacagcacaatcggttccta 2212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  226 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||| ||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  239 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 301  Q
    |||||||||||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 301
Target Start/End: Complemental strand, 23760 - 23559
Alignment:
Q  101 agcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaac 200  Q
    |||||||  ||||||||||   |||| |||||||| | ||||||||| | | ||||||||| ||||   ||| | |||| ||||| ||||| |||||||     
T  23760 agcaacattatagattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaaatcagcatcacaccctaat 23661  T
Q  201 cctcaattta-tcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 299  Q
     ||||||||  ||||| | |||||| |  |||| | ||||||||||||||||| |||||||| ||  | ||||| || ||||||||||||||  ||||||    
T  23660 tctcaattttgtcttcaagaactattcttttagattaattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcag 23561  T
Q  300 aa 301  Q
    ||    
T  23560 aa 23559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 680 - 780
Alignment:
Q  202 ctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 300  Q
    |||||||||| ||| | |||||| |  |||||| |||||| ||||||||||| |||| ||| || || ||||| || |||||||||||||||||||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcaga 779  T
Q  301 a 301  Q
    |    
T  780 a 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 5941 - 5857
Alignment:
Q  207 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  5941 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 290
Target Start/End: Original strand, 1321 - 1441
Alignment:
Q  171 ttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgaga 269  Q
    |||| |||| ||||| |||||||||||||  |||| ||| ||| || | ||| ||  |||||| |||||||||| |||||||| || ||||| || || |    
T  1321 ttcctttcaaaatcagcatcaaaccctaattctcagttttatcatcaagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaa 1420  T
Q  270 gatagtctcacccttacctta 290  Q
    |||||||||||||||||||||    
T  1421 gatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  235 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 5487 - 5520
Alignment:
Q  269 agatagtctcacccttaccttagttttgcagaat 302  Q
    ||||||||||||||||||||||||||||||||||    
T  5487 agatagtctcacccttaccttagttttgcagaat 5520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 493099 - 493019
Alignment:
Q  219 aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 300  Q
    |||||| | ||||| | ||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||  |||||||    
T  493099 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 14668 - 14620
Alignment:
Q  276 ctcacccttaccttagttttgcagaatgattacacagcacaatcggttc 324  Q
    |||||||||||||||| ||||||||| |||| ||||||| |||||||||    
T  14668 ctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttc 14620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 294  Q
    ||||||||| ||||||||| |||||||| || ||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 288
Target Start/End: Original strand, 73149 - 73337
Alignment:
Q  101 agcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaac 200  Q
    |||||||  ||||||||||   |||| | |||||| | ||||||||| | | ||||||||| |||| |  || | |||| ||||| ||||| |||||||     
T  73149 agcaacattatagattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccgtttctttcaaaatcaacatcacaccctaat 73248  T
Q  201 cctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 288  Q
     |||||||| |||||| | | |||| | ||||| | |||||||| |||||||| |||||||| || || ||||| || |||||||||||    
T  73249 tctcaattttatcttcaagagctatcctattagattaattttcataaattatacattatgatcattgaaagataatcccacccttacct 73337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||||||||||| ||||||| ||| || ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  236 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 10634 - 10550
Alignment:
Q  207 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 291  Q
    ||||||||| | |||||| | ||||| | ||||||||||||||||| |||| ||| || || ||||| || ||| ||||||||||    
T  10634 tttatcttcaagaactattctattagattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttag 10550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  234 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 290  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University