View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20057_low_27 (Length: 286)

Name: NF20057_low_27
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20057_low_27
NF20057_low_27
[»] chr2 (17 HSPs)
chr2 (16-268)||(29908306-29908547)
chr2 (178-268)||(29132677-29132767)
chr2 (147-268)||(8556161-8556282)
chr2 (147-268)||(12874166-12874287)
chr2 (178-268)||(6903757-6903847)
chr2 (178-267)||(4616680-4616770)
chr2 (179-268)||(5290741-5290831)
chr2 (185-247)||(37057161-37057223)
chr2 (178-267)||(41192425-41192515)
chr2 (178-267)||(5814577-5814668)
chr2 (178-268)||(16710245-16710335)
chr2 (178-267)||(32737914-32738004)
chr2 (190-267)||(34619943-34620021)
chr2 (174-217)||(11815517-11815560)
chr2 (178-267)||(1887873-1887963)
chr2 (224-268)||(37891765-37891810)
chr2 (174-210)||(29908451-29908487)
[»] chr3 (23 HSPs)
chr3 (147-268)||(48086766-48086887)
chr3 (129-268)||(25574731-25574871)
chr3 (128-268)||(39415249-39415390)
chr3 (132-243)||(2182556-2182668)
chr3 (131-267)||(49742141-49742279)
chr3 (178-268)||(6755757-6755847)
chr3 (131-267)||(23029554-23029692)
chr3 (131-265)||(41649853-41649989)
chr3 (178-268)||(6462950-6463040)
chr3 (178-267)||(49501574-49501664)
chr3 (178-268)||(7956303-7956393)
chr3 (172-268)||(14995134-14995231)
chr3 (178-239)||(47560448-47560509)
chr3 (206-248)||(37282182-37282224)
chr3 (178-268)||(50561399-50561488)
chr3 (178-237)||(53401547-53401606)
chr3 (223-268)||(49303208-49303254)
chr3 (183-268)||(25745181-25745265)
chr3 (174-211)||(29523212-29523249)
chr3 (174-210)||(2182591-2182627)
chr3 (178-210)||(23029596-23029628)
chr3 (174-210)||(48086791-48086827)
chr3 (178-210)||(49742205-49742237)
[»] chr1 (26 HSPs)
chr1 (130-268)||(41871638-41871777)
chr1 (131-268)||(46923684-46923822)
chr1 (161-268)||(48566695-48566802)
chr1 (131-268)||(39222609-39222747)
chr1 (178-268)||(3660219-3660309)
chr1 (178-268)||(5770604-5770694)
chr1 (180-268)||(21482862-21482950)
chr1 (178-268)||(5766865-5766955)
chr1 (204-268)||(49597173-49597237)
chr1 (178-267)||(33686586-33686676)
chr1 (180-267)||(47983638-47983725)
chr1 (178-267)||(12926782-12926872)
chr1 (178-267)||(10308428-10308517)
chr1 (178-268)||(23602999-23603090)
chr1 (178-267)||(7014816-7014906)
chr1 (131-251)||(30308285-30308404)
chr1 (179-268)||(20447122-20447211)
chr1 (179-268)||(20532885-20532974)
chr1 (178-266)||(1671369-1671458)
chr1 (178-238)||(30858451-30858511)
chr1 (220-267)||(43138691-43138739)
chr1 (178-245)||(22605393-22605460)
chr1 (178-268)||(3752866-3752956)
chr1 (178-268)||(18844020-18844110)
chr1 (178-210)||(39222651-39222683)
chr1 (174-210)||(41871681-41871717)
[»] chr7 (18 HSPs)
chr7 (128-268)||(27874067-27874208)
chr7 (149-268)||(41219417-41219536)
chr7 (131-268)||(39476435-39476573)
chr7 (161-267)||(18239450-18239556)
chr7 (178-268)||(8260834-8260925)
chr7 (207-268)||(34354431-34354492)
chr7 (207-264)||(37524203-37524260)
chr7 (178-265)||(39283944-39284032)
chr7 (178-267)||(4035194-4035284)
chr7 (178-268)||(29714254-29714343)
chr7 (205-267)||(37449984-37450047)
chr7 (178-239)||(3742437-3742498)
chr7 (174-210)||(38455066-38455102)
chr7 (222-268)||(21153753-21153799)
chr7 (207-248)||(14678288-14678329)
chr7 (224-268)||(30362767-30362812)
chr7 (174-211)||(38455068-38455105)
chr7 (174-210)||(27874127-27874163)
[»] chr4 (35 HSPs)
chr4 (128-268)||(38131342-38131483)
chr4 (149-268)||(27761172-27761291)
chr4 (131-268)||(49065593-49065731)
chr4 (131-268)||(21713207-21713345)
chr4 (178-268)||(2777929-2778019)
chr4 (147-243)||(31822963-31823059)
chr4 (178-268)||(9242961-9243051)
chr4 (178-268)||(14289664-14289754)
chr4 (178-267)||(42118929-42119019)
chr4 (178-267)||(43502327-43502417)
chr4 (178-266)||(37694555-37694644)
chr4 (178-268)||(24608196-24608286)
chr4 (178-268)||(42038969-42039059)
chr4 (178-267)||(52789350-52789440)
chr4 (178-267)||(54703592-54703682)
chr4 (178-268)||(13856104-13856193)
chr4 (178-268)||(31936365-31936454)
chr4 (178-267)||(34939401-34939491)
chr4 (182-268)||(13867825-13867910)
chr4 (174-236)||(21058683-21058745)
chr4 (222-268)||(32935683-32935729)
chr4 (178-266)||(49261829-49261918)
chr4 (176-210)||(26973372-26973406)
chr4 (173-211)||(32310356-32310394)
chr4 (178-267)||(33985491-33985581)
chr4 (178-263)||(36046938-36047024)
chr4 (174-236)||(42563153-42563215)
chr4 (214-267)||(47020057-47020110)
chr4 (178-267)||(54809046-54809136)
chr4 (174-211)||(850633-850670)
chr4 (178-239)||(8932529-8932589)
chr4 (174-211)||(39463078-39463115)
chr4 (174-210)||(21058711-21058747)
chr4 (174-210)||(38131387-38131423)
chr4 (174-210)||(48577410-48577446)
[»] chr8 (16 HSPs)
chr8 (133-268)||(34471635-34471770)
chr8 (131-268)||(43693607-43693745)
chr8 (181-268)||(23542785-23542872)
chr8 (178-264)||(15743234-15743321)
chr8 (177-267)||(4759250-4759341)
chr8 (178-268)||(5913157-5913248)
chr8 (178-263)||(1217746-1217832)
chr8 (178-267)||(4322651-4322741)
chr8 (178-267)||(9039620-9039710)
chr8 (178-267)||(35161562-35161651)
chr8 (178-248)||(42182615-42182685)
chr8 (174-210)||(34471694-34471730)
chr8 (178-265)||(43835370-43835458)
chr8 (176-210)||(5944125-5944159)
chr8 (174-236)||(20520418-20520480)
chr8 (175-208)||(20669802-20669835)
[»] chr6 (11 HSPs)
chr6 (160-268)||(319161-319269)
chr6 (178-268)||(13312541-13312631)
chr6 (182-265)||(23912295-23912378)
chr6 (178-267)||(11598974-11599064)
chr6 (178-248)||(30634177-30634247)
chr6 (213-268)||(9521402-9521457)
chr6 (174-211)||(7526809-7526846)
chr6 (180-267)||(3515260-3515348)
chr6 (174-217)||(4362406-4362449)
chr6 (178-252)||(1077587-1077660)
chr6 (174-210)||(7526807-7526843)
[»] chr5 (19 HSPs)
chr5 (131-268)||(1172978-1173116)
chr5 (178-268)||(7084014-7084104)
chr5 (178-268)||(6427238-6427328)
chr5 (193-268)||(41758754-41758829)
chr5 (178-267)||(1081930-1082020)
chr5 (178-268)||(11125827-11125916)
chr5 (178-267)||(12144001-12144091)
chr5 (178-267)||(2786687-2786777)
chr5 (178-268)||(16100835-16100925)
chr5 (178-267)||(18172177-18172267)
chr5 (190-268)||(20202651-20202728)
chr5 (180-268)||(28784812-28784900)
chr5 (197-267)||(34954022-34954093)
chr5 (178-268)||(40034043-40034134)
chr5 (174-209)||(19401898-19401933)
chr5 (194-268)||(43147467-43147542)
chr5 (223-267)||(7662246-7662291)
chr5 (174-210)||(2740562-2740598)
chr5 (173-205)||(3461481-3461513)
[»] scaffold0861 (1 HSPs)
scaffold0861 (178-268)||(3767-3857)
[»] scaffold0051 (1 HSPs)
scaffold0051 (190-267)||(20060-20138)
[»] scaffold0753 (1 HSPs)
scaffold0753 (181-268)||(3956-4044)
[»] scaffold0217 (1 HSPs)
scaffold0217 (178-268)||(25553-25644)
[»] scaffold1212 (1 HSPs)
scaffold1212 (174-203)||(1801-1830)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 29908306 - 29908547
Alignment:
Q  16 attctcaaggtggatggctgtcaaaatagattgggcctgcccaatggggccaactagaccgacctagggactct-gttgaaatagaatcctgctctttat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||    
T  29908306 attctcaaggtggatggctgtcaaaatagattgggcctgcccaatggggccaactagaccgacctagggactcttgttgaaatagaatgttgctcttcat 29908405  T
Q  115 catgcacattttgccagcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcacct 213  Q
    |             ||||||||||||||||| || |||||||||  ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  29908406 c-------------cagcacattttgctcgcgccctgcagctatgccaaaaatgcccttgcgcaagttaagttacgctgcgtgacttaacttgcgcacct 29908492  T
Q  214 tataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29908493 tataacctctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactc 29908547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 29132767 - 29132677
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||  ||||||||||||  ||||||||||||  ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  29132767 agttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtgacttaagtcacgcaccaccggcctatgcgcgagttaactc 29132677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 8556161 - 8556282
Alignment:
Q  147 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 246  Q
    |||||||| ||  ||||||||||||| ||| |||||||||||||  |||||||||||| ||||||||||||| || || ||||||||||||||||| ||     
T  8556161 cctgcagccatgccaaaaatgctcttgcgctagttaagtcacgcaacgtgacttaactggcgcaccttataatctatgtgtgacttaagtcacgcatcaa 8556260  T
Q  247 tggcctatgcgcgagttaactc 268  Q
    || ||||||| |||||| ||||    
T  8556261 tgccctatgcacgagtttactc 8556282  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 12874166 - 12874287
Alignment:
Q  147 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 246  Q
    |||||| | ||| |||| |||||||| ||  |||||||||| ||  |||||||||||  |||| |||||||| |||| ||||||||||||||||||||||    
T  12874166 cctgcaaccataccaaatatgctcttgcgttagttaagtcatgcaacgtgacttaaccagcgcgccttataatctctacgtgacttaagtcacgcaccac 12874265  T
Q  247 tggcctatgcgcgagttaactc 268  Q
    || |||||||||||||||||||    
T  12874266 tgacctatgcgcgagttaactc 12874287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 6903847 - 6903757
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||   ||||| ||||| || |||||| ||||||||||||||||||||||  |||||||||||||||    
T  6903847 agttaagtcacgctgcgtgacttaactcatgcaccatataatctatgcgtggcttaagtcacgcaccactggccggtgcgcgagttaactc 6903757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 4616770 - 4616680
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||||| |||||||||||  ||||| | | || |||||||||||||||||||||| |||||| |||| | ||||||||||||    
T  4616770 agttaagtcacgctgtgtgacttaactcacgcacttcacaagctctgcgtgacttaagtcacgccccactgagcctctacgcgagttaact 4616680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 5290831 - 5290741
Alignment:
Q  179 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    |||||||||||||| |||||||||||   | ||||   || ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  5290831 gttaagtcacgctgtgtgacttaactcatgtacctctcaagctctgcgtgacttaagtcacgcaccactgagcctatgcgtgagttaactc 5290741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 37057161 - 37057223
Alignment:
Q  185 tcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 247  Q
    ||||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||||||    
T  37057161 tcacgctgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccact 37057223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 41192515 - 41192425
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||| ||| |||||||||  ||||||| | || ||||| |||||||||||||| |||||||| ||||||| |||||||||||    
T  41192515 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgtgtgacttaagtcacacaccactgagcctatgtgcgagttaact 41192425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 5814668 - 5814577
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgac-ttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||| ||| |||||||||  ||||||| | || ||||||||||| ||||||||||||| |||| |||||| ||||||||||||    
T  5814668 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgactttaagtcacgcactactgagcctatacgcgagttaact 5814577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 16710335 - 16710245
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||||| || ||||||||||  |||| ||||||   ||||||||| |||||||||||||||||| | | ||| |||||||||||    
T  16710335 agttaagtcacgcagcatgacttaactaacgcatcttatatgttctgcgtgagttaagtcacgcaccactgacatgtgcacgagttaactc 16710245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 32738004 - 32737914
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||| | |||||||||||    ||||||||||||  | |||||||||||||||||||||||||| |||| |||| |||||||||    
T  32738004 agttaagtcacacagcgtgacttaataaacgcaccttataagttgtgcgtgacttaagtcacgcaccactgagcctctgcgtgagttaact 32737914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 34620021 - 34619943
Alignment:
Q  190 ctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||| |||| |  ||||||| | || |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  34620021 ctgcgtgagttaagtcacgcacctcacaagctctgcgtgacttaagtcacgcactactgagcctatgcgcgagttaact 34619943  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 11815517 - 11815560
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttata 217  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  11815517 cgcaagttaagacacgctgcgtgtcttaacttgcgcacgttata 11815560  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 1887873 - 1887963
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||||||||  ||| |||||||   ||||||| | || |||||||||||||||||||||| | ||||  | ||||||||||||||||    
T  1887873 agttaagtcacgcaacgtcacttaacacacgcacctcacaagctctgcgtgacttaagtcacgcccaactgatcatatgcgcgagttaact 1887963  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 37891765 - 37891810
Alignment:
Q  224 gcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||||    
T  37891765 gcgtgacttaagtcacgcaccactgagccttagcgcgagttaactc 37891810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 29908487 - 29908451
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  29908487 cgcaagttaagtcacgcagcgtaacttaacttgcgca 29908451  T

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Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 48086766 - 48086887
Alignment:
Q  147 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 246  Q
    |||||||| || |||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48086766 cctgcagccatgtcaaaaatacccttgcgcaagttaagtcacactgcgtgacttaacttgcgcaccttataacctctgcatgacttaagtcacgcaccac 48086865  T
Q  247 tggcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||||||    
T  48086866 tggcctatgcgcgagttaactc 48086887  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 129 - 268
Target Start/End: Original strand, 25574731 - 25574871
Alignment:
Q  129 cagcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgt 227  Q
    |||||||||||| |||| || |||||| || |||||||||| ||| |||||||||||||| || ||||||||||||||| ||||||| ||||||||| ||    
T  25574731 cagcacattttggtcgcgccctgcagccatgtcaaaaatgcccttgcgcaagttaagtcatgccgcgtgacttaacttgtgcaccttgtaacctctgtgt 25574830  T
Q  228 gacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25574831 gacttaagtcacgcaccactggcctatgcgcgagttaactc 25574871  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 39415249 - 39415390
Alignment:
Q  128 ccagcacattttgctcgca-cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 226  Q
    |||| |||||||||||||  |||||| | ||  ||||||||  ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39415249 ccagtacattttgctcgcgtcctgcaaccatgccaaaaatggccttgcacaaattaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 39415348  T
Q  227 tgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||| |||| ||||||||||    
T  39415349 tgacttaagtcacgcaccactggcctgtgcgtgagttaactc 39415390  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 2182668 - 2182556
Alignment:
Q  132 cacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgac 230  Q
    ||||||||||||||||| |||||| || | |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  2182668 cacattttgctcgcaccatgcagccatgttaaaaatgcccttgcgtaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcttgat 2182569  T
Q  231 ttaagtcacgcac 243  Q
    |||||||||||||    
T  2182568 ttaagtcacgcac 2182556  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 49742279 - 49742141
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||| |||||||| |||||| ||  ||||||||  ||| ||| ||||||||||||| |||||||||||||  ||||||| | || ||||||||||    
T  49742279 gcacattttactcgcaccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtga 49742180  T
Q  230 cttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  49742179 cttaagtcacgcaccactgagtctatgcgcgagttaact 49742141  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 6755847 - 6755757
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||  |||||||||||| || || |||||||||||||| |||||||||| | |||||||||||||||    
T  6755847 agttaagtcacgctgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacacaccactggcatgtgcgcgagttaactc 6755757  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 267
Target Start/End: Original strand, 23029554 - 23029692
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||||||||||| |||||||||||||  |||| || |||| || |||||||    
T  23029554 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtga 23029653  T
Q  230 cttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||| ||||||||| ||||||||| |||||||||    
T  23029654 cttaagtcatgcaccactgagcctatgcgggagttaact 23029692  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 41649853 - 41649989
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| || |||||| || |||||||||||||| || || ||||||||||| ||| || ||||||  | ||||| | || ||||| ||||    
T  41649853 gcacattttgctcgcgccctgcagccatgtcaaaaatgctcttgcgtaaattaagtcacgcagcgagatttaactcacacacctcacaagctctgtgtga 41649952  T
Q  230 cttaagtcacgcaccactg-gcctatgcgcgagttaa 265  Q
    |||||||||||||| |||| |||||||||||||||||    
T  41649953 cttaagtcacgcactactgagcctatgcgcgagttaa 41649989  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 6462950 - 6463040
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||| ||||||||||||||  |||||||||||| || || ||||||||||||||||||||||||| | || | ||||||||||    
T  6462950 agttaagtcacgttgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacgcaccactggcatgtgtgtgagttaactc 6463040  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 49501664 - 49501574
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||| | ||| |||||||||  ||||||| | || ||||||||||||||||||||||||||||| || |||||| |||||||||    
T  49501664 agttaagtcacacagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcttatgcgtgagttaact 49501574  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 7956393 - 7956303
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||||| || |||||||||| ||||||||||||   | ||||||| ||||| ||| |||||||| | | |||||||||||||||    
T  7956393 agttaagtcacgcagcatgacttaactagcgcaccttatatggtgtgcgtgagttaagacacacaccactgacatgtgcgcgagttaactc 7956303  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 14995134 - 14995231
Alignment:
Q  172 tacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggc-ctatgcgcgagttaactc 268  Q
    ||||| ||||||||||||| |||||||||||||  | |||||||||| || || |||| ||||||||| |||||||| |  | |||||||||||||||    
T  14995134 tacgctagttaagtcacgcagcgtgacttaactaacacaccttataatctttgtgtgagttaagtcacacaccactgacattttgcgcgagttaactc 14995231  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 47560509 - 47560448
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 239  Q
    ||||||||||||| |||||||||||||  | ||||||||||  |||||||||||||||||||    
T  47560509 agttaagtcacgccgcgtgacttaactcacacaccttataagttctgcgtgacttaagtcac 47560448  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 37282224 - 37282182
Alignment:
Q  206 gcgcaccttataacctctgcgtgacttaagtcacgcaccactg 248  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  37282224 gcgcaccttataagctttgcgtgacttaagtcacgcaccactg 37282182  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 50561399 - 50561488
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||| || |||||||||||  || |||| ||| | || || |||||||||||| |||||||| |||| |||||||||||||||    
T  50561399 agttaagtcacgttgtgtgacttaactcacgtacctaatagc-tcagcatgacttaagtcatgcaccacttgcctgtgcgcgagttaactc 50561488  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 53401606 - 53401547
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtc 237  Q
    |||||||| |||| ||| |||||||||  ||||||| |||| ||||||||||||||||||    
T  53401606 agttaagttacgcagcgagacttaactcacgcacctcataagctctgcgtgacttaagtc 53401547  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 49303208 - 49303254
Alignment:
Q  223 tgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    ||||||||||||||||| |||||||| |||| |||||||||||||||    
T  49303208 tgcgtgacttaagtcacacaccactgagcctctgcgcgagttaactc 49303254  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 25745265 - 25745181
Alignment:
Q  183 agtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||| || ||||||||||  | ||||||||| | ||||||||||||||||||||| ||  |||||  ||| |||||||||||    
T  25745265 agtcacgcagcatgacttaactcacacaccttatagc-tctgcgtgacttaagtcacgctcctttggccgctgcacgagttaactc 25745181  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 29523249 - 29523212
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 211  Q
    |||||||||||||||||||| || ||||||||||||||    
T  29523249 cgcaagttaagtcacgctgcatgtcttaacttgcgcac 29523212  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 2182591 - 2182627
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  2182591 cgcaagttaagtcacgcagcgtgacttaacttacgca 2182627  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 23029628 - 23029596
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||||||||||||||||||| |||||    
T  23029628 agttaagtcacgctgcgtgacttaactagcgca 23029596  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 48086827 - 48086791
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||||||||| | |||||||||||||||||    
T  48086827 cgcaagttaagtcacgcagtgtgacttaacttgcgca 48086791  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 49742205 - 49742237
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||||||||||||||||||| |||||    
T  49742205 agttaagtcacgctgcgtgacttaactagcgca 49742237  T

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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 41871638 - 41871777
Alignment:
Q  130 agcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtg 228  Q
    |||||||||||||||| || | |||| ||  ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  41871638 agcacattttgctcgcgccctacagccatgccaaaaatgcccttgcgcaagttaagtcacgctgcatgacttaacttgcgcaccttataacctctgtgtg 41871737  T
Q  229 acttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  41871738 acttaagtaacgcaccactggcctatgcgcgagttaactc 41871777  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 46923684 - 46923822
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||| |||||||  |||||||||||| ||||||||||||| || |||||||    
T  46923684 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttacgtcacgcaacgtgacttaactagcgcaccttataatctatgcgtga 46923783  T
Q  230 cttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  46923784 cttaagtcacgcaccaatggcctatgcgcgagttaactc 46923822  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 48566695 - 48566802
Alignment:
Q  161 aaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcga 260  Q
    ||||||| |||| || ||||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  48566695 aaaaatgttcttgcgtaagttaagtcacgttgcgtgacttaacttgcagaccttataacctttgcgtgacttaagtcacgcattactggcctatgcgcga 48566794  T
Q  261 gttaactc 268  Q
    ||||||||    
T  48566795 gttaactc 48566802  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 39222609 - 39222747
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| || |||||| ||  ||||||||  ||| ||| ||||||||||||| ||||||||||||| |||| |||||||| || |||||||    
T  39222609 gcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaactagcgcgccttataatctatgcgtga 39222708  T
Q  230 cttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  39222709 cttaagtcacgcaccaatggcctatgcacgagttaactc 39222747  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 3660309 - 3660219
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||| | | ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3660309 agttaagtcgcacagcgtgacttaactagcgcaccttataagctctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactc 3660219  T

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Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 5770694 - 5770604
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||  |||||||||||| || |||||| ||||||||||||||||||||||| |||||||| ||||||    
T  5770694 agttaagtcacgctgcgtgacttaactcacgcaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagctaactc 5770604  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 21482862 - 21482950
Alignment:
Q  180 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||| |||||||||||||  | |||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  21482862 ttaagtcacgcagcgtgacttaactaacacaccttataagctctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactc 21482950  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 5766955 - 5766865
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||| || |||||||  | |||||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||    
T  5766955 agttaagtcacgctgcatggcttaactcacacaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagttaactc 5766865  T

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Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 49597173 - 49597237
Alignment:
Q  204 ttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  49597173 ttgcgcatcttataacttcagcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 49597237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 33686676 - 33686586
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || |||||||||||||||||||||||||| |||||||||||||||||||    
T  33686676 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 33686586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 47983638 - 47983725
Alignment:
Q  180 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaact 267  Q
    ||||||||||| |||||||||||||  |||||||||||   ||||||||| |||||||||  ||||||||| | ||||||||||||||    
T  47983638 ttaagtcacgcagcgtgacttaactaacgcaccttatatgttctgcgtgagttaagtcacttaccactggcatgtgcgcgagttaact 47983725  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 12926782 - 12926872
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||| ||| |||||||||   |||||| | || ||||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  12926782 agttaagtcacgcagcgagacttaactcatgcacctcacaagctctgcgcgacttaagtcatgcaccactgagcctatgcgcgagttaact 12926872  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 10308428 - 10308517
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaact 267  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || || ||||||||||||||||||||||||| | |||| |||||||||    
T  10308428 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccactggcatgtgcgtgagttaact 10308517  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 23603090 - 23602999
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||| |||||||||||||| | ||| || ||| | ||| |||||||||||||||||||| ||| || | |||||||||||||||    
T  23603090 agttaagtcacgttgcgtgacttaactcgtgcatctaatatatctcagcgtgacttaagtcacgcacaactagcttgtgcgcgagttaactc 23602999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 7014906 - 7014816
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact-ggcctatgcgcgagttaact 267  Q
    ||||||||||| | ||| |||||||||  ||||||| | || |||| |||||||||||||||||||||||  || ||||||||||||||||    
T  7014906 agttaagtcacacagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccactaagcatatgcgcgagttaact 7014816  T

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Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 30308285 - 30308404
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| || |||||| ||  |||||||| | || ||  ||||||||||||| ||||||||||||  | |||||||||||| | |  ||||    
T  30308285 gcacattttgctcgcgccctgcagccatgccaaaaatgtttttgcgttagttaagtcacgcagcgtgacttaaccagtgcaccttataacttat--gtga 30308382  T
Q  230 cttaagtcacgcaccactggcc 251  Q
    |||||||||||||||| |||||    
T  30308383 cttaagtcacgcaccaatggcc 30308404  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 20447122 - 20447211
Alignment:
Q  179 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||||||||||  | ||| |||| | || |||||||||||||| ||||||| ||| ||||  ||||||||||||||    
T  20447122 gttaagtcacgctgcgtgacttaactcacacacgttat-agctttgcgtgacttaagttacgcacccctgagccttcgcgcgagttaactc 20447211  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 20532885 - 20532974
Alignment:
Q  179 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||||||||||  | ||| |||| | || |||||||||||||| ||||||| ||| ||||  ||||||||||||||    
T  20532885 gttaagtcacgctgcgtgacttaactcacacacgttat-agctttgcgtgacttaagttacgcacccctgagccttcgcgcgagttaactc 20532974  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 1671458 - 1671369
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaac 266  Q
    ||||||||||||| ||||||||||| |  ||||||||| ||  | |||  ||||||||||||| ||||||| |||| |||||||||||||    
T  1671458 agttaagtcacgcagcgtgacttaattcacgcaccttacaagttttgcaggacttaagtcacgaaccactgagcctctgcgcgagttaac 1671369  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 30858451 - 30858511
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtca 238  Q
    |||||||||| || |||||||||||||  ||||||||| || ||||| |||||||||||||    
T  30858451 agttaagtcatgcagcgtgacttaactcacgcaccttacaagctctgtgtgacttaagtca 30858511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 43138739 - 43138691
Alignment:
Q  220 ctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  43138739 ctctgcgtgatttaagtcgcgcaccactgagcctatgcgcgagttaact 43138691  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 22605393 - 22605460
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 245  Q
    ||||||||| ||| ||||||||||| |  ||||||| | || |||| |||||||||||||||||||||    
T  22605393 agttaagtcgcgcagcgtgacttaagtcacgcacctcacaagctctacgtgacttaagtcacgcacca 22605460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 3752866 - 3752956
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||||   ||||||||| || ||||||||||||||   ||||   |||||||||| |||||||||||| || |||| |||||||    
T  3752866 agttaagtcacgtaacgtgacttagctagcgcaccttataacacatgcgcaccttaagtcacacaccactggcctgtgtgcgaattaactc 3752956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 18844110 - 18844020
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||| |||| || ||||||||||  | ||| |||||   ||||||||||||||||||| |||||||||  | ||||| |||||||||    
T  18844110 agttaagttacgccgcctgacttaactaacacactttatatgttctgcgtgacttaagtcacacaccactggtatgtgcgcaagttaactc 18844020  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 39222683 - 39222651
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||||||||||||||||||| |||||    
T  39222683 agttaagtcacgctgcgtgacttaactagcgca 39222651  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 41871717 - 41871681
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    |||||||||||||| || |||||||||||||||||||    
T  41871717 cgcaagttaagtcatgcagcgtgacttaacttgcgca 41871681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 27874208 - 27874067
Alignment:
Q  128 ccagcacattttgctcgca-cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 226  Q
    ||||||||||||||||||  |||||||| ||  ||||||||  ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  27874208 ccagcacattttgctcgcgtcctgcagccatgccaaaaatgtccttgcgcaagttaagtcacgctgcgtggcttaacttgcgcaccatataacctctgcg 27874109  T
Q  227 tgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  27874108 tgacttaagccacgcaccactgacctatgcgcgagttaactc 27874067  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 41219536 - 41219417
Alignment:
Q  149 tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 248  Q
    |||||| || |||||||||   || |||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  41219536 tgcagccatgtcaaaaatgtcattgcgcaagttaagttacactgcgtgatttaacttgcgcatcttataacctctgcgtgacttaagtcacgcatcactg 41219437  T
Q  249 gcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||||    
T  41219436 gcctatgcgcgagttaactc 41219417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 39476435 - 39476573
Alignment:
Q  131 gcacattttgctcgcacct-gcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| ||| ||||| || | |||||||| ||||||  |||||||||| || ||||||||||||| ||||||||||||| || |||||||    
T  39476435 gcacattttgctcgcgccttgcagccatgttaaaaatgcccttacgttagttaagtcatgcagcgtgacttaactagcgcaccttataatctatgcgtga 39476534  T
Q  230 cttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  39476535 cttaagtcacgcaccattagcctatgcgcgagttaactc 39476573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 18239556 - 18239450
Alignment:
Q  161 aaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcga 260  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||||||| || ||||||||||||||    
T  18239556 aaaaatgcccttgcacaagttaagtcacgctgcgtgacttaacttgtacaccttataacatctgtgtgacttaagtcacgcatcaatggcctatgcgcga 18239457  T
Q  261 gttaact 267  Q
    |||||||    
T  18239456 gttaact 18239450  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 8260834 - 8260925
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  8260834 agttaagtcacgctgcgtgacttaactcatgcaccttataatctctgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactc 8260925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 34354492 - 34354431
Alignment:
Q  207 cgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34354492 cgcaccttatatgctctgcgtgacttaagtcacgtaccactggcctatgcgcgagttaactc 34354431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 37524260 - 37524203
Alignment:
Q  207 cgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagtta 264  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  37524260 cgcaccttataagctctgcgtgacttaagtcacgcaccactggcctgtgcgcgagtta 37524203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 39283944 - 39284032
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaa 265  Q
    ||||||||||||| ||||| |||||||  ||||||| |||| ||||||||||||||||||||||||||||| |||| | ||||||||||    
T  39283944 agttaagtcacgcagcgtggcttaactcacgcacctcataagctctgcgtgacttaagtcacgcaccactgagcctctacgcgagttaa 39284032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 4035284 - 4035194
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||| ||| |||||||||   |||||| | || | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  4035284 agttaagtcacgcagcgagacttaactcatgcacctcacaatccctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 4035194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 29714254 - 29714343
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||||||||| |  ||||||||||| | |||||||||||||||||| ||||||||| | |  ||||||||||||||    
T  29714254 agttaagtcacgctgcgtgacttaaatcacgcaccttatagc-tctgcgtgacttaagtcatgcaccactgacttgggcgcgagttaactc 29714343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 37449984 - 37450047
Alignment:
Q  205 tgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||||||||| || ||||||||||||||| |||| ||||| |||||||| ||||||||||    
T  37449984 tgcgcaccttataatctttgcgtgacttaagtcgcgcatcactgagcctatgcacgagttaact 37450047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 3742498 - 3742437
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 239  Q
    |||||||||| || |||||| |||||| |||||| |||||| ||||| ||||||||||||||    
T  3742498 agttaagtcatgcagcgtgatttaactagcgcactttataatctctgtgtgacttaagtcac 3742437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 38455102 - 38455066
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38455102 cgcaagttaagacacgctgcgtgacttaacttgcgca 38455066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 21153753 - 21153799
Alignment:
Q  222 ctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||| |||||||||||||||||||| | |||| ||||||||||    
T  21153753 ctgcgtgagttaagtcacgcaccactggcatgtgcgtgagttaactc 21153799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 14678288 - 14678329
Alignment:
Q  207 cgcaccttataacctctgcgtgacttaagtcacgcaccactg 248  Q
    ||||||| | ||||||| ||||||||||||||||||||||||    
T  14678288 cgcacctcacaacctctacgtgacttaagtcacgcaccactg 14678329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 30362812 - 30362767
Alignment:
Q  224 gcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||||    
T  30362812 gcgtgacttaagtcacgcaccactgagccttagcgcgagttaactc 30362767  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 38455068 - 38455105
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 211  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  38455068 cgcaagttaagtcacgcagcgtgtcttaacttgcgcac 38455105  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 27874127 - 27874163
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  27874127 cgcaagttaagccacgcagcgtgacttaacttgcgca 27874163  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 38131342 - 38131483
Alignment:
Q  128 ccagcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 226  Q
    |||||||||||||||||| || |||||| ||  ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |    
T  38131342 ccagcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgcaagttaagtcacgctgcatgacttaacttgcgcaccttctaacctctgtg 38131441  T
Q  227 tgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  38131442 tgacttaagtcacgcaccacgggcctatgcacgagttaactc 38131483  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 27761291 - 27761172
Alignment:
Q  149 tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 248  Q
    |||||| || |||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||     
T  27761291 tgcagccatgtcaaaaatgcccttgcgcaagttaagtcacgctgcgtgatttaatttgcgcaccttataatctctgcgtgacttaagtcacgcaccacta 27761192  T
Q  249 gcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||||    
T  27761191 gcctatgcgcgagttaactc 27761172  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 49065731 - 49065593
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| |||||||||||| |||||||||||||| ||||||||||||| || |||||||    
T  49065731 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgttgcgtgacttaactagcgcaccttataaactatgcgtga 49065632  T
Q  230 cttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49065631 cttaagtcacgcaccactggcctatgcgcgagttaactc 49065593  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 21713345 - 21713207
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||||||||||| |||||| |||||| ||||||||||||| || ||||||     
T  21713345 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgatttaactagcgcaccttataatctatgcgtgg 21713246  T
Q  230 cttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  21713245 cttaagtcacgcaccaatggcctatgcacgagttaactc 21713207  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 2777929 - 2778019
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||||| |||||||||||||  ||||||||||||  ||||||| ||||||||||| | |||||||||| |||||||||||||||    
T  2777929 agttaagtcacgcagcgtgacttaactcacgcaccttataagttctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactc 2778019  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 31822963 - 31823059
Alignment:
Q  147 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcac 243  Q
    |||||||| ||  ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||| ||||||||    
T  31822963 cctgcagccatgccaaaaatgcccttgcgcaagttaagccacgctgtgtgacttaacttgcgcaccttataagctttgcgtgagttaactcacgcac 31823059  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 9243051 - 9242961
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    ||||||||||| || ||||||||||||  | |||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  9243051 agttaagtcacactacgtgacttaactcacacaccttataatctctgcgtgacttaagtcacgcaccactgagcct-tccgcgagttaactc 9242961  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 14289664 - 14289754
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||| | | ||||||||||| |||||||||||||  | || |||||||||||||| ||||||||  ||||||||||||||||||    
T  14289664 agttaagtcacacagtgtgacttaactagcgcaccttataatatatgtgtgacttaagtcacacaccactgatctatgcgcgagttaactc 14289754  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 42118929 - 42119019
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||||||||||||||||||||||  | ||||| | ||  |||||||||||||||||||||||||||| |||| | ||||||||||||    
T  42118929 agttaagtcacgctgcgtgacttaactcacacacctcacaagttctgcgtgacttaagtcacgcaccactgagcctctacgcgagttaact 42119019  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 43502417 - 43502327
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||| |||| ||| || ||||| ||||||||| | || |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  43502417 agttaagtaacgcagcgagatttaacatgcgcacctcacaagctctgcgtgacttaagtcgcgcaccactgagcctatgcgcgagttaact 43502327  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 37694644 - 37694555
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaac 266  Q
    ||||||||||||| |||||||||||||  ||||||| | || |||||| |||||||||||||||||||||| |||| | |||||||||||    
T  37694644 agttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcatgacttaagtcacgcaccactgagcctctacgcgagttaac 37694555  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 24608286 - 24608196
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||| |||| ||| ||||||||| ||||||||||||| || || |||| |||||||||||| ||||||  | |||||||||||||||    
T  24608286 agttaagttacgcagcgagacttaactagcgcaccttataatctttgtgtgagttaagtcacgcatcactggtatgtgcgcgagttaactc 24608196  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 42038969 - 42039059
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||||| ||||||| ||||  || |||||||||||  |||||   |||| |||||||||||||||||| |||||||||||||||    
T  42038969 agttaagtcacgcagcgtgacctaaccagcacaccttataacaactgcgcaccttatgtcacgcaccactggcctgtgcgcgagttaactc 42039059  T

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Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 52789350 - 52789440
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||||| |  |||| |||||||   ||||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52789350 agttaagtcaagtagcgtcacttaacacacgcacctcacaaactctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 52789440  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 54703592 - 54703682
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact-ggcctatgcgcgagttaact 267  Q
    |||||||| |||| ||| |||||||| | ||||||| | || |||||||||||||||||| ||||||||| |||||||| |||||||||||    
T  54703592 agttaagtaacgcagcgagacttaacatacgcacctcacaagctctgcgtgacttaagtcgcgcaccactgggcctatgtgcgagttaact 54703682  T

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Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 13856193 - 13856104
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||    ||||| ||| | || ||||||||||||||||||| |||||||| |||| | |||||||||    
T  13856193 agttaagtcacgctgcgtgacttaactcatccacctaatagc-tcagcgtgacttaagtcacgcatcactggccgatgcacaagttaactc 13856104  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 31936454 - 31936365
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||  | ||||||||||  ||||||||||  | | || |||||||||||||||||||||||||||  ||||||||||||||    
T  31936454 agttaagtcacgcgacttgacttaactcacgcaccttattgctt-tgtgtgacttaagtcacgcaccactggcctgggcgcgagttaactc 31936365  T

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Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 34939491 - 34939401
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||  ||||||||||||   ||||||| | || |||||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  34939491 agttaagtcacgtagcgtgacttaacacacgcacctcacaagctctgcatgacttatgtcacgcaacactgagcctatgcgcgagttaact 34939401  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 13867910 - 13867825
Alignment:
Q  182 aagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||   |||||| ||| | || || ||||||||||||||||||||| |||  |||||||| ||||||    
T  13867910 aagtcacgctgcgtgacttaactcatgcacctaatagc-tcagcatgacttaagtcacgcaccactagccggtgcgcgagctaactc 13867825  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 21058745 - 21058683
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 236  Q
    |||||||||||||||||||||||||||||| ||||||| ||    ||| ||||||||||||||    
T  21058745 cgcaagttaagtcacgctgcgtgacttaacatgcgcacgttgagtcctatgcgtgacttaagt 21058683  T

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Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 32935683 - 32935729
Alignment:
Q  222 ctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||||    
T  32935683 ctgcgttagttaagtcacgcaccacttgcctatgcgcgagttaactc 32935729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 49261918 - 49261829
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaac 266  Q
    ||||||||||||| || ||||||||||  ||||||| ||| |  || ||||||||||||||||||||||||| | | ||||| |||||||    
T  49261918 agttaagtcacgcagcatgacttaactcacgcacctaatagagttcagcgtgacttaagtcacgcaccactgacatgtgcgcaagttaac 49261829  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 26973372 - 26973406
Alignment:
Q  176 caagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    |||||||||||||||||||||||||||||| ||||    
T  26973372 caagttaagtcacgctgcgtgacttaacttacgca 26973406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 32310394 - 32310356
Alignment:
Q  173 acgcaagttaagtcacgctgcgtgacttaacttgcgcac 211  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  32310394 acgcaagtaaagtcacgctgcgtgtcttaacttgcgcac 32310356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 33985581 - 33985491
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac-tggcctatgcgcgagttaact 267  Q
    |||||||||||||  ||||  ||||||  ||||||| | || ||||||||||||||||||||||| |||   |||| ||||||||||||||    
T  33985581 agttaagtcacgcaacgtggtttaactcacgcacctcacaaactctgcgtgacttaagtcacgcaacacaaagcctctgcgcgagttaact 33985491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 36047024 - 36046938
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagtt 263  Q
    |||||||| |||| ||| |||||||| ||  ||||| | || || ||||||||||||||| |||||||||| |||||||||| ||||    
T  36047024 agttaagtaacgcagcgagacttaacatgtacacctcacaagctttgcgtgacttaagtcgcgcaccactgagcctatgcgcaagtt 36046938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 42563215 - 42563153
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 236  Q
    |||||||||||||||||||||||| ||||| ||||||  || || | | ||||||||||||||    
T  42563215 cgcaagttaagtcacgctgcgtgatttaacctgcgcatgttgtatcttatgcgtgacttaagt 42563153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 47020057 - 47020110
Alignment:
Q  214 tataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||    
T  47020057 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaact 47020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 54809136 - 54809046
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||| |||| |||  | ||||| || |||||| |||| || || |||||||||||| | |||||||| |||||||||||||||||||    
T  54809136 agttaagtaacgcagcgatatttaacatgtgcacctcataatctatgtgtgacttaagtcgcacaccactgagcctatgcgcgagttaact 54809046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 850670 - 850633
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 211  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  850670 cgcaagttaagtcatgctgcgtgtcttaacttgcgcac 850633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 8932529 - 8932589
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 239  Q
    ||||||||||| | | |||||||||||  |||||||||| | ||||||||||||||||||||    
T  8932529 agttaagtcacacagtgtgacttaactcacgcaccttat-agctctgcgtgacttaagtcac 8932589  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 39463078 - 39463115
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 211  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  39463078 cgcaagttaagttacgctgcgtgacttaacatgcgcac 39463115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 21058711 - 21058747
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    |||| |||||||||||| |||||||||||||||||||    
T  21058711 cgcatgttaagtcacgcagcgtgacttaacttgcgca 21058747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 38131423 - 38131387
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    |||||||||||||| || |||||||||||||||||||    
T  38131423 cgcaagttaagtcatgcagcgtgacttaacttgcgca 38131387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 48577410 - 48577446
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  48577410 cgcaagttaagacacgttgcgtgacttaacttgcgca 48577446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 34471770 - 34471635
Alignment:
Q  133 acattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgact 231  Q
    ||||||||||||| || |||||| || |||||||||   || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  34471770 acattttgctcgcgccctgcagccatgtcaaaaatgtctttgcgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataaactatgcgtgact 34471671  T
Q  232 taagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  34471670 taagtcacgcaccattgg-ctatgcgcgagttaactc 34471635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 43693745 - 43693607
Alignment:
Q  131 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    ||||||||||||||| || |||||| ||  ||||||||  ||| ||| ||||| ||||||| ||||||||||||| ||||||||||||| || || ||||    
T  43693745 gcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaggtcacgcagcgtgacttaactagcgcaccttataatctatgtgtga 43693646  T
Q  230 cttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||| |||||||||| |||| ||||||||||| |||||    
T  43693645 cttaattcacgcaccaatggcttatgcgcgagtaaactc 43693607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 23542872 - 23542785
Alignment:
Q  181 taagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||| ||||||||||||| |  | |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23542872 taagtcacactgcgtgacttaaataacacaccgtataagctctgcgtgacttaattcacgcaccactggcctatgcgcgagttaactc 23542785  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 15743321 - 15743234
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagtta 264  Q
    ||||||||||||| ||  |||||||||  ||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||    
T  15743321 agttaagtcacgcagcaagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagtta 15743234  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 4759341 - 4759250
Alignment:
Q  177 aagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||||  |||||||||||   ||||||| | || ||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  4759341 aagttaagtcacgcaacgtgacttaacacacgcacctcacaagctctgcgtgacttaagtcatgcaccactgagcctctgcgcgagttaact 4759250  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 5913248 - 5913157
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    ||||||||||| | |||||||||||||  ||||||| | || |||||||||||||||||||| ||||| || |||| || ||||||||||||    
T  5913248 agttaagtcacaccgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacacaccattgagcctctgtgcgagttaactc 5913157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 1217746 - 1217832
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagtt 263  Q
    |||||||||||| ||||||||||||||  ||||||| | || || || ||||||||||||||||||||| | |||| ||||||||||    
T  1217746 agttaagtcacgttgcgtgacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccaccgagcctctgcgcgagtt 1217832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 4322651 - 4322741
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||| |||||| ||| |||||||||  ||||||| | ||  ||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  4322651 agttaactcacgcagcgagacttaactcacgcacctcacaagttctgcgtaacttaggtcacgcaccactgagcctatgcgcgagttaact 4322741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 9039620 - 9039710
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||| ||||| ||||| |||||||  ||||||| | ||||| ||||||||||||||||| ||||||||  ||| ||||||||||||||    
T  9039620 agttaagccacgcagcgtgccttaactcacgcacctcacaacctttgcgtgacttaagtcacacaccactgaacctctgcgcgagttaact 9039710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 35161562 - 35161651
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||||| || ||| ||||||||   | ||||| | || |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  35161562 agttaagtcatgcagcgagacttaacacacccacctcacaagctctgcgtgactta-gtcacgcaccactgagcctatgcgcgagttaact 35161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 42182615 - 42182685
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 248  Q
    ||||||||||| |||||||||||||||  |||| || | || |||| |||||| |||||||||||||||||    
T  42182615 agttaagtcacactgcgtgacttaactcacgcatctcacaagctctacgtgacctaagtcacgcaccactg 42182685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 34471694 - 34471730
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||||||||| |||||||||||||||||||    
T  34471694 cgcaagttaagtcacgcagcgtgacttaacttgcgca 34471730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 43835458 - 43835370
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaa 265  Q
    ||||||||||||| ||  |||||||||  | ||||| ||| | ||| ||||||||||||||||||||||| || || ||||||||||||    
T  43835458 agttaagtcacgcagcaggacttaactcacacacctaatagagctcagcgtgacttaagtcacgcaccaccggtctgtgcgcgagttaa 43835370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 5944125 - 5944159
Alignment:
Q  176 caagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||| |||||||||||||||||||||||||    
T  5944125 caagttaagacacgctgcgtgacttaacttgcgca 5944159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 20520418 - 20520480
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 236  Q
    ||||||||||||||||||| |||||||||| ||||||| ||    ||| ||||||||||||||    
T  20520418 cgcaagttaagtcacgctgtgtgacttaacatgcgcacgttgagtcctatgcgtgacttaagt 20520480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 20669835 - 20669802
Alignment:
Q  175 gcaagttaagtcacgctgcgtgacttaacttgcg 208  Q
    ||||||||||||||||||||||||||||| ||||    
T  20669835 gcaagttaagtcacgctgcgtgacttaacatgcg 20669802  T

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Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 319161 - 319269
Alignment:
Q  160 caaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcg 259  Q
    ||||||||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  319161 caaaaatgctcttgcgcaagttaagtcacgctgtgtaatttaacttgcgcaccttataacctctgtgtgacttaagtcatgcaccactggtctatgcgcg 319260  T
Q  260 agttaactc 268  Q
    |||||||||    
T  319261 agttaactc 319269  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 13312541 - 13312631
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| |||||||||||  || |||||||||||    
T  13312541 agttaagtcacgctgcgtgacttaactaacgcaccttataagctctgcgtgacttaagtcacgaaccactggcctgggcacgagttaactc 13312631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 23912378 - 23912295
Alignment:
Q  182 aagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaa 265  Q
    ||||||||| | |||||||||||  |||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||    
T  23912378 aagtcacgccgtgtgacttaactcacgcaccttataagctctgcgtgacttaagtcatgcaccactggcatgtgcgcgagttaa 23912295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 11598974 - 11599064
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||| |||| | ||| |||||||||  ||||||| | || ||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  11598974 agttaactcacaccgcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccaccgagcctatgcgcgagttaact 11599064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 30634247 - 30634177
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 248  Q
    ||||||||||||| ||| |||||||||  ||||||| | || |||| ||||||||||||||||||||||||    
T  30634247 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccactg 30634177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 9521402 - 9521457
Alignment:
Q  213 ttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||| ||||||||||||||||||||||||||||||| | | ||||| |||||||    
T  9521402 ttataagctctgcgtgacttaagtcacgcaccactggcatgttcgcgacttaactc 9521457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 7526809 - 7526846
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 211  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7526809 cgcaagttaagtcacgctgcgtgtcttaacttgcgcac 7526846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 3515348 - 3515260
Alignment:
Q  180 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||| | | |||||||||||  ||||| | | || || |||||||||||||||||||||||||| |||| | ||||||||||||    
T  3515348 ttaagtcacacagtgtgacttaactcacgcacttcacaagctttgcgtgacttaagtcacgcaccactgagcctctacgcgagttaact 3515260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 4362449 - 4362406
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttata 217  Q
    |||||||||||||||| |||||| |||||||||||||| |||||    
T  4362449 cgcaagttaagtcacgttgcgtgccttaacttgcgcacgttata 4362406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 1077587 - 1077660
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcct 252  Q
    ||||||||||||| |||| ||||||||  |||| ||||||   ||||||||| |||||| |||||||||||||||    
T  1077587 agttaagtcacgcagcgtaacttaactcacgcagcttatagt-tctgcgtgatttaagttacgcaccactggcct 1077660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 7526843 - 7526807
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  7526843 cgcaagttaagacacgcagcgtgacttaacttgcgca 7526807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 1173116 - 1172978
Alignment:
Q  131 gcacattttgctcgcac-ctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 229  Q
    |||||||| |||||| | ||||||  |||||||| |||| ||| ||  ||||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  1173116 gcacatttggctcgcgcactgcaggcatatcaaatatgcccttgcgttagttaagtcacgcagcgtgacttaacaagcgcaccttataacctctgcgtga 1173017  T
Q  230 cttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  1173016 cttaagttacgcaccactggcctatgcgccagttaactc 1172978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 7084104 - 7084014
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||||||    
T  7084104 agttaagtcacgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcactaatggcctatgcgcgagttaactc 7084014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 6427238 - 6427328
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||  || ||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||    
T  6427238 agttaagtcttgcagcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcacaactggcctatgcgcgagttaactc 6427328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 41758829 - 41758754
Alignment:
Q  193 cgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  41758829 cgtgacttaacttgcgcattttataacctctgcgtgacttgagtcacgcaccattgacctatgcgcgagttaactc 41758754  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 1082020 - 1081930
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||| ||| |||||||||  ||||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1082020 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 1081930  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 11125916 - 11125827
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||  ||||||||||||  ||||||||||| | |||||||||||||||||| ||| ||||||| | |||||||||||||||    
T  11125916 agttaagtcacgcaacgtgacttaactcacgcaccttatagc-tctgcgtgacttaagtcatgcatcactggcatgtgcgcgagttaactc 11125827  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 12144001 - 12144091
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || |||||||||||||||||||||||||| |||||||| ||||||||||    
T  12144001 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcacgagttaact 12144091  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 2786687 - 2786777
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||| |||  || |||||||||  ||||||| | || ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  2786687 agttaagtcgcgcaacgagacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccactgagcctatgcgcgagttaact 2786777  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 16100835 - 16100925
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||| ||  |||| |||||||  ||||||||||||   |||||||||||||||||||||||| | |||| |||||||||||||||    
T  16100835 agttaagtcatgcgacgtggcttaactcacgcaccttataagtcctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactc 16100925  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 18172267 - 18172177
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||||||||| | || |||||||   ||||| | | || ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  18172267 agttaagtcacgcagtgtcacttaacacacgcacatcacaagctctgcgtgacttaagtcacgcaccactgagcttatgcgcgagttaact 18172177  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 20202728 - 20202651
Alignment:
Q  190 ctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||||||||  |||| |||||| | |||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  20202728 ctgcgtgacttaactcacgcatcttatagc-tctgcgtgacttgagtcacacaccactggcctgggcgcgagttaactc 20202651  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 28784900 - 28784812
Alignment:
Q  180 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||| |||||||||||||||||   | ||||||||||  | ||||||||||||||||| | ||||||||||  | ||||||||||||    
T  28784900 ttaagttacgctgcgtgacttaacaaacacaccttataatttatgcgtgacttaagtcacaccccactggcctgggtgcgagttaactc 28784812  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 34954022 - 34954093
Alignment:
Q  197 acttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||| ||||||||| | || || |||||||||||||||  ||||||||| |||||||||||||||||||    
T  34954022 acttaacatgcgcacctcacaatctatgcgtgacttaagtcgtgcaccactgagcctatgcgcgagttaact 34954093  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 40034134 - 40034043
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    |||||||||||||  ||||||||||||   |||||||| ||   ||||| ||||||||||||||||||||| |||| | |||||||||||||    
T  40034134 agttaagtcacgcatcgtgacttaactcatgcaccttacaattactgcgagacttaagtcacgcaccactgagcctctacgcgagttaactc 40034043  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 19401898 - 19401933
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgc 209  Q
    |||||||||||||||||| |||||||||||||||||    
T  19401898 cgcaagttaagtcacgctacgtgacttaacttgcgc 19401933  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 43147542 - 43147467
Alignment:
Q  194 gtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    |||||||||||  |||| || | || ||||||||||||||||||||||||||||| |||| | | |||||||||||    
T  43147542 gtgacttaactaacgcatctcacaaactctgcgtgacttaagtcacgcaccactgagcctctacacgagttaactc 43147467  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 7662291 - 7662246
Alignment:
Q  223 tgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||    
T  7662291 tgcgtgagttaagtcacgcaccactgagcctatgcgcgatttaact 7662246  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 2740598 - 2740562
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaacttgcgca 210  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  2740598 cgcaagttaagacacactgcgtgacttaacttgcgca 2740562  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 3461481 - 3461513
Alignment:
Q  173 acgcaagttaagtcacgctgcgtgacttaactt 205  Q
    ||||||||||||||||||| |||||||||||||    
T  3461481 acgcaagttaagtcacgctacgtgacttaactt 3461513  T

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Target: scaffold0861 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 3857 - 3767
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactc 268  Q
    |||||||||| ||  ||||||||| ||  | |||||||||| || ||  ||||||||||||| ||||||||||||||||||||||||||||    
T  3857 agttaagtcatgcaacgtgacttagctaacacaccttataagctttgtctgacttaagtcacacaccactggcctatgcgcgagttaactc 3767  T

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Target: scaffold0051 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 20060 - 20138
Alignment:
Q  190 ctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 267  Q
    |||||||| ||||||  ||||||| | || || |||||||||||||||||||||||||| |||||||||||||||||||    
T  20060 ctgcgtgagttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 20138  T

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Target: scaffold0753 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 3956 - 4044
Alignment:
Q  181 taagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactc 268  Q
    ||||||||| ||||| ||| ||||  | || ||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  3956 taagtcacgatgcgtaactaaactcacacatcttataatctctgcgtgacttaagtcacgcaccactgagcctttccgcgagttaactc 4044  T

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Target: scaffold0217 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 25553 - 25644
Alignment:
Q  178 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca-ctggcctatgcgcgagttaactc 268  Q
    |||||||||||||||||||| |||| |  | |||||||||| || ||||||||||||| |||| |||| |  |||| |||||||||||||||    
T  25553 agttaagtcacgctgcgtgatttaattcacacaccttataatctatgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaactc 25644  T

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Target: scaffold1212 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Complemental strand, 1830 - 1801
Alignment:
Q  174 cgcaagttaagtcacgctgcgtgacttaac 203  Q
    ||||||||||||||||||||||||||||||    
T  1830 cgcaagttaagtcacgctgcgtgacttaac 1801  T

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