View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_low_3 (Length: 633)
Name: NF20057_low_3
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Complemental strand, 48310613 - 48310134
Alignment:
| Q |
17 |
caagattggtcttgaatgatgtcatcatcatcttcttgttcttcgattcttgtacttcaaattccaacaagaatggattctcattctgttgtgatgcaaa |
116 |
Q |
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| T |
48310613 |
caagattggtcttgaatgatgtcatcatcatcttcttgttcttcgattcttgcacttcaaattccaacaagaatggattctcattctgttgtgacgcaaa |
48310514 |
T |
|
| Q |
117 |
agatgtttttgaaacctctgaatctcaattttggcagagacagaggcatccaacaacagctggtgaaactgaaccatcatcatcgcgttttgccattgcg |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| || |
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| T |
48310513 |
agatgtttttgaaacctctgaatctaaattttggcagagacagaggcatccaacagcagctgctgaagctgaaccatcatcatcgcgttttgccattacg |
48310414 |
T |
|
| Q |
217 |
gtgttgttcaacctcaactacttccagtggggaccacctccataacaatgatgctgatgttgttcttcatgttcagggaatgatgtgtgagggatgtgct |
316 |
Q |
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| T |
48310413 |
gtgttgttcagcctcaactacttccagtggggaccacctccataacaatgatgctgatgttgttcttcatgttcagggaatgatgtgtgagggatgtgct |
48310314 |
T |
|
| Q |
317 |
tctagtgtcaaaaaacttcttgaaactcaagtatgtcgtctatttctatttgaattcattaaattatatttataatataattctggtttaacgacttctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48310313 |
tctagtgtcaaaaaacttcttgaaactcaagtatgtcgtctatttctatttgaattcattaaattatatttataatataattctggtttaacgacttctt |
48310214 |
T |
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| Q |
417 |
gaaaccctttcgtcccggttcttcgaac-cgggacatccaactctttatctcttagctcaaaccaattgaactatcaaac |
495 |
Q |
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| T |
48310213 |
gaaaccctttcgtcccggttcttcgaacacaggacatccaactctttatctcttagctcaaaccaattgaactaccaaac |
48310134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 492 - 621
Target Start/End: Complemental strand, 48310067 - 48309938
Alignment:
| Q |
492 |
aaacgtgcaattagtatacatactatcactgcaatctaaatatatgttattaattaatggacagccacaagtgttatctgctaatgtgaatctagcatcg |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48310067 |
aaacgtgcaattagtatacatactatcactgcaatctaaatatatgttattaattaatggacagccacaagtgttatctgctaatgtgaatctagcatcg |
48309968 |
T |
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| Q |
592 |
gagatagcactggtttccctttcacctttg |
621 |
Q |
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| T |
48309967 |
gagatagcactagtttccctttcacctttg |
48309938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 8163678 - 8163635
Alignment:
| Q |
452 |
tccaactctttatctcttagctcaaaccaattgaactatcaaac |
495 |
Q |
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| T |
8163678 |
tccaactctttatctattagttcaaaccaattgaacaatcaaac |
8163635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 491
Target Start/End: Complemental strand, 42950683 - 42950648
Alignment:
| Q |
456 |
actctttatctcttagctcaaaccaattgaactatc |
491 |
Q |
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| T |
42950683 |
actctttatctcttagctcaaaccagttgaactatc |
42950648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 11660535 - 11660579
Alignment:
| Q |
447 |
ggacatccaactctttatctcttagctcaaaccaattgaactatc |
491 |
Q |
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|||| |||||||||||| ||||||||||||| || |||||||||| |
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| T |
11660535 |
ggacctccaactctttaactcttagctcaaatcagttgaactatc |
11660579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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