View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20057_low_34 (Length: 215)

Name: NF20057_low_34
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20057_low_34
NF20057_low_34
[»] chr3 (2 HSPs)
chr3 (15-198)||(25287710-25287897)
chr3 (135-171)||(38296177-38296213)
[»] chr1 (2 HSPs)
chr1 (16-126)||(17106543-17106654)
chr1 (131-186)||(5828685-5828740)
[»] chr7 (3 HSPs)
chr7 (16-95)||(16031491-16031570)
chr7 (45-135)||(14615454-14615543)
chr7 (16-118)||(11731852-11731957)
[»] chr2 (3 HSPs)
chr2 (132-198)||(6853172-6853238)
chr2 (132-173)||(36097691-36097732)
chr2 (137-189)||(15819092-15819144)
[»] chr4 (1 HSPs)
chr4 (45-90)||(2768126-2768171)
[»] chr8 (1 HSPs)
chr8 (162-195)||(32495699-32495732)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 25287710 - 25287897
Alignment:
Q  15 aatatgatggtaacaagaggaagttagagagggtgaatagctttttcgattaaaatcgt----ttgtgaaagtgtggtttaaaaacttttttgaaatctt 110  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||    |||||||||| ||||||||||||||||||||||||||    
T  25287710 aatatgatggtaataagaggaagttagagggggtgaatagcttttttgattaaaatcgtaattttgtgaaagtatggtttaaaaacttttttgaaatctt 25287809  T
Q  111 atgactatattggattttgcaagagattgtggatgtaggtatgaagtgtcgaaccacaatcttgtgagttatttttgtcctttttatt 198  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25287810 atgactatattggattttgcaagagattgtgaatgtaggtatgaagtgtcgaaccacaatcttgtgagttatttttgtcctttttatt 25287897  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 38296177 - 38296213
Alignment:
Q  135 gattgtggatgtaggtatgaagtgtcgaaccacaatc 171  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  38296177 gattgtagatgtaggtatgaagtgtcgaacgacaatc 38296213  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 17106543 - 17106654
Alignment:
Q  16 atatgatggtaacaagaggaagttagagagggtgaatagctttttcgattaaaatcgtttgtgaaagtgtggttt-aaaaacttttttgaaatcttatga 114  Q
    ||||||| ||||||||||||| |||||  ||||||||| ||||||||| ||||| |||||| ||||| ||||||| |||||||| ||||||| |||||||    
T  17106543 atatgatagtaacaagaggaacttagaaggggtgaataactttttcgaataaaaacgtttgcgaaagcgtggtttaaaaaacttgtttgaaaacttatga 17106642  T
Q  115 ctatattggatt 126  Q
    ||||||||||||    
T  17106643 ctatattggatt 17106654  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 5828685 - 5828740
Alignment:
Q  131 aagagattgtggatgtaggtatgaagtgtcgaaccacaatcttgtgagttattttt 186  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  5828685 aagagattgtggatgtaggtatgaagtgccgaaccacaatcttgtgagtttttttt 5828740  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 16031570 - 16031491
Alignment:
Q  16 atatgatggtaacaagaggaagttagagagggtgaatagctttttcgattaaaatcgtttgtgaaagtgtggtttaaaaa 95  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| | ||||||||||| ||||    
T  16031570 atatgatggtaacaagaggaagttagagggggtgaatagcttcttcgattaataacgtttgcggaagtgtggtttgaaaa 16031491  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 14615454 - 14615543
Alignment:
Q  45 gggtgaatagctttttcgattaaaatcgtttgtgaaagtgtggtttaaaaacttttttgaaatcttatgactatattggattttgcaagag 135  Q
    ||||||||||||| |||| |||||| ||||||  ||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  14615454 gggtgaatagcttcttcggttaaaaacgtttgcaaaagtgtggtttaaaaa-ttgtttgaaatcttataactatattgaattttgcaagag 14615543  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 11731852 - 11731957
Alignment:
Q  16 atatgatggtaacaagaggaagttagagaggg-tgaatagctttttcga-ttaaaatcgtttgtgaaagtgtggttt-aaaaacttttttgaaatcttat 112  Q
    |||||||||||| |||| |||| ||||| ||| ||| ||||| |||||| ||||||  ||||| ||||||||||||| |||||||| |||||||| ||||    
T  11731852 atatgatggtaataagatgaagctagagggggatgagtagctatttcgatttaaaaatgtttgcgaaagtgtggtttgaaaaacttgtttgaaatgttat 11731951  T
Q  113 gactat 118  Q
    ||||||    
T  11731952 gactat 11731957  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 6853238 - 6853172
Alignment:
Q  132 agagattgtggatgtaggtatgaagtgtcgaaccacaatcttgtgagttatttttgtcctttttatt 198  Q
    |||||||||||||||| |||| || |||| |||||||||||| || |||||||||||| ||||||||    
T  6853238 agagattgtggatgtaagtataaattgtcaaaccacaatcttatgggttatttttgtcttttttatt 6853172  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 36097691 - 36097732
Alignment:
Q  132 agagattgtggatgtaggtatgaagtgtcgaaccacaatctt 173  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  36097691 agagattgtggatgtaggtatgaaatgtcgaaccacaatctt 36097732  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 15819144 - 15819092
Alignment:
Q  137 ttgtggatgtaggtatgaagtgtcgaaccacaatcttgtgagttatttttgtc 189  Q
    |||||||| ||  |||||| ||||||||||||||||||||| |||||||||||    
T  15819144 ttgtggatttaattatgaaatgtcgaaccacaatcttgtgaattatttttgtc 15819092  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 2768171 - 2768126
Alignment:
Q  45 gggtgaatagctttttcgattaaaatcgtttgtgaaagtgtggttt 90  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||    
T  2768171 gggtgaatagctttttcgattaaaaaggtttgtggaagtgtggttt 2768126  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 32495732 - 32495699
Alignment:
Q  162 aaccacaatcttgtgagttatttttgtccttttt 195  Q
    |||||||||||||||||||||||||||| |||||    
T  32495732 aaccacaatcttgtgagttatttttgtctttttt 32495699  T

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