View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_low_4 (Length: 620)
Name: NF20057_low_4
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 17 - 602
Target Start/End: Original strand, 41539893 - 41540478
Alignment:
| Q |
17 |
ataaatagtcatagtaaggtatatacacttatgccatgtagtgttataaaccggttaataatgtcatcatccattgttaacttcctaactgtgtagctgc |
116 |
Q |
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| T |
41539893 |
ataaatagtcatagtaaggtatatacacttatgccatgtagtgttataaaccggttaataatgtcatcatccattgttaacttcctaactgtgtagctac |
41539992 |
T |
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| Q |
117 |
gccaattacgatacagatttgaatcgctcacttcaaccttgaacaacattcgttgatcaacaaacatatcgagctccggtggaatctcagcagagttttt |
216 |
Q |
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| T |
41539993 |
gccaattacgatacagatttgaatcgctcacttcaaccttgaacaacattcgttgatcaacaaacatattgagctccggtggaatctcagcagagttttt |
41540092 |
T |
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| Q |
217 |
ctatacaaagcaagacgtgaattttaataacaggagcacattttaacttatacaatatcaacttagactaatatcgcatcattttagttctatctaacct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41540093 |
ctatacaaagcaagacgtgaattttaataacaggagcacattttaacttataaaatatcaacttagactaatatcgcatcattttagttctatctaacct |
41540192 |
T |
|
| Q |
317 |
cagtcatagcatcaagaaaatattgtgcagatttgcccacagcctgtgtcacaacaaggtcatacagaacaaatgtggttgaccctgtgttgtcaataac |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41540193 |
cagtcatagcatgaagaaaatattgtgcagatttgcccacagcctgtgtcacaacacggtcatacagaacaaatgtggttgaccctgtgttgtcaataac |
41540292 |
T |
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| Q |
417 |
ttcaagatgaagcttgaacctgaaaggataacatacaaccacctcagataaaatgattggtataagtaatttaaaaatgatcattaaaataaattatatc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41540293 |
ttcaagatgaagcttgaacctgaaaggataacatacaaccacctcagataaaatgattggtataagtaatttaaaaatgatcattaaaataaattatatc |
41540392 |
T |
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| Q |
517 |
cattttttcttgcctgtgaacagctgttcttggtaagctgcacttgtcacagtaaatctgtccattgatagtggtaatcctcgaag |
602 |
Q |
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| T |
41540393 |
cattttttcttgcctgtgaacagctgttcttggtaagctgcacttgtcacagtaaatctgtccattgatagtggtaatcctcgaag |
41540478 |
T |
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